|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052788 ID=TCONS_00052788|Name=TCONS_00052788|organism=Clytia hemisphaerica|type=transcript|length=1120bp
TGAAATCATGACTTAAGAAATTGATCAAAGGTTTTGCAGAACACACTCCA
CCCTAATTGTGCAATTCTTTACCTTTCGgataatataaacaaaacagaaa
aagtttgtaaaaaataaacattctTTTCAATGTAAGCATGAAAGTAATAC
ATCTCAATGtacaaaaaatatatacttaAAAGAAGATCGAATGCTTATGA
ATCAAACAAGGTTGGCCCAATATTATAGTCAATTTTAGTCCGAATGGAAA
TGCATttagttttcttcaaaaaaataacTCCTTTGATTTTATAAAACATT
GACCATGCAAATAATAAGCGTTTATCAATTGCAGTGTTTGAAACAGAggc
aaaaagctttaaaaatgcTCAGCAGTCAAGAAGAACTGGCCATATAAAGC
AAGTCTGGATTTAAAACTTTTCCAACACACTTCTGTCTCACGTTTTGGAG
TTAATATTGATGTTATTACTAGCAGCATCATTCAATGTTGCACGCGGAAC
TTCTTGAATCAGCTTTGGCGTTGGTTGATTTAAATTTTCAggttcacttt
cgttttcactaTCATCACTGGACTCAGAATCAGTATCGGACAACAATATA
TCATTATCAACAACAGATAGGTTCATTTCAATCACTTTATCACAttcatc
aacattttcaatgtctagtttttccttttcttcaGTGTCCATCGAAAGCA
ATGCTTCATTTGATGTGATTAATTGTGGTAAAAAGTTCTTCACTTGATCT
AGAATGTTCGATTTTTCAATTCgatatgtattttttttcaaatctgacGG
TGGAATCCCCTTTTTCAATGGTTTTACAAGTAATTGTTTCTGCAAGTTGT
TATTGGGTTCAACTTTCAAAAGTACACTTGGTTTTTTTATTGCAGGGATA
TTTTCATCCATCACTGCTGCAATGATATAACTAGTTCAAGAACCTGAAAG
GTAACATTCAAAAACCATAATTATACATATACCTACCACTGATCCATATT
TGAGTTTTCCAGTTTTCAATGAAGATGAGGTACTGTTACCAAAGGAAGTT
TAGCTATAATGTCGGCTTAGCATGCTAAACCGGGAAAAATAGCAGAAAAA
TATACCAAAAAAGTCACAAG Run BLAST on NCBI protein sequence of TCONS_00052788-protein >TCONS_00052788-protein ID=TCONS_00052788-protein|Name=TCONS_00052788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MDENIPAIKKPSVLLKVEPNNNLQKQLLVKPLKKGIPPSDLKKNTYRIEK
SNILDQVKNFLPQLITSNEALLSMDTEEKEKLDIENVDECDKVIEMNLSV
VDNDILLSDTDSESSDDSENESEPENLNQPTPKLIQEVPRATLNDAASNN
ININSKT Run BLAST on NCBI transcript from alignment at scaffold_22:142909..144028 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052788 ID=TCONS_00052788|Name=TCONS_00052788|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at scaffold_22:142909..144028 (Clytia hemisphaerica)
CTTGTGACTTTTTTGGTATATTTTTCTGCTATTTTTCCCGGTTTAGCATG
CTAAGCCGACATTATAGCTAAACTTCCTTTGGTAACAGTACCTCATCTTC
ATTGAAAACTGGAAAACTCAAATATGGATCAGTGGTAGGTATATGTATAA
TTATGGTTTTTGAATGTTACCTTTCAGGTTCTTGAACTAGTTATATCATT
GCAGCAGTGATGGATGAAAATATCCCTGCAATAAAAAAACCAAGTGTACT
TTTGAAAGTTGAACCCAATAACAACTTGCAGAAACAATTACTTGTAAAAC
CATTGAAAAAGGGGATTCCACCgtcagatttgaaaaaaaatacatatcGA
ATTGAAAAATCGAACATTCTAGATCAAGTGAAGAACTTTTTACCACAATT
AATCACATCAAATGAAGCATTGCTTTCGATGGACACtgaagaaaaggaaa
aactagacattgaaaatgttgatgaaTGTGATAAAGTGATTGAAATGAAC
CTATCTGTTGTTGATAATGATATATTGTTGTCCGATACTGATTCTGAGTC
CAGTGATGAtagtgaaaacgaaagtgaaccTGAAAATTTAAATCAACCAA
CGCCAAAGCTGATTCAAGAAGTTCCGCGTGCAACATTGAATGATGCTGCT
AGTAATAACATCAATATTAACTCCAAAACGTGAGACAGAAGTGTGTTGGA
AAAGTTTTAAATCCAGACTTGCTTTATATGGCCAGTTCTTCTTGACTGCT
GAgcatttttaaagctttttgccTCTGTTTCAAACACTGCAATTGATAAA
CGCTTATTATTTGCATGGTCAATGTTTTATAAAATCAAAGGAgttatttt
tttgaagaaaactaaATGCATTTCCATTCGGACTAAAATTGACTATAATA
TTGGGCCAACCTTGTTTGATTCATAAGCATTCGATCTTCTTTtaagtata
tattttttgtaCATTGAGATGTATTACTTTCATGCTTACATTGAAAagaa
tgtttattttttacaaactttttctgttttgtttatattatcCGAAAGGT
AAAGAATTGCACAATTAGGGTGGAGTGTGTTCTGCAAAACCTTTGATCAA
TTTCTTAAGTCATGATTTCA Coding sequence (CDS) from alignment at scaffold_22:142909..144028 >TCONS_00052788 ID=TCONS_00052788|Name=TCONS_00052788|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_22:142909..144028 (Clytia hemisphaerica)
ATGGATGAAAATATCCCTGCAATAAAAAAACCAAGTGTACTTTTGAAAGT
TGAACCCAATAACAACTTGCAGAAACAATTACTTGTAAAACCATTGAAAA
AGGGGATTCCACCgtcagatttgaaaaaaaatacatatcGAATTGAAAAA
TCGAACATTCTAGATCAAGTGAAGAACTTTTTACCACAATTAATCACATC
AAATGAAGCATTGCTTTCGATGGACACtgaagaaaaggaaaaactagaca
ttgaaaatgttgatgaaTGTGATAAAGTGATTGAAATGAACCTATCTGTT
GTTGATAATGATATATTGTTGTCCGATACTGATTCTGAGTCCAGTGATGA
tagtgaaaacgaaagtgaaccTGAAAATTTAAATCAACCAACGCCAAAGC
TGATTCAAGAAGTTCCGCGTGCAACATTGAATGATGCTGCTAGTAATAAC
ATCAATATTAACTCCAAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052788-exon-scaffold_22-1491911889:142909..144028 | TCONS_00052788-exon-scaffold_22-1491911889:142909..144028 | Clytia hemisphaerica | exon |
| TCONS_00052788-exon-scaffold_22-1510915933:142909..144028 | TCONS_00052788-exon-scaffold_22-1510915933:142909..144028 | Clytia hemisphaerica | exon |
| TCONS_00052788-exon-scaffold_22-1575043694:142909..144028 | TCONS_00052788-exon-scaffold_22-1575043694:142909..144028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:142909..144028 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027921 | DUF4598 |
Blast
The following BLAST results are available for this feature:
|
