TCONS_00052781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052781
Unique NameTCONS_00052781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052781 ID=TCONS_00052781|Name=TCONS_00052781|organism=Clytia hemisphaerica|type=transcript|length=1765bp
gtaaaTGATTAAGTGGCCGCCTTTAATAAATCATTGTTGATTTTTCGTAA
GCAGTTATATAAAACGTATGTATGAAGAAAAATAGTGGGAAGTTTTATTT
GGTATTTATAATAACAATATGACCATGTTCTGATTTCGGTTGTTTGACAT
TTTCGAAAGAGGAGTAAAACTTtactttgatttgattttttggttTGAAG
AACAGGCAGTGGATAAAATGAAGAATGTATTTGCTTCTCTgctccaaatc
tttgtttttattcaaaGTTTGGTCACGTGTATCGTGTTAGCATCCCCTTT
AACCATTGATCTGAACACCAATACCACAACACTGGAATCAATCCAACCGT
CATCCTCGTCAATCATGATGATTTCATCTAGCATTGTTGCCAATAATTCT
TCAATGAACGGTACCGCCTCGGGTGGAGGGAAAACAGACGAAGAACTTGC
ACGAATGGCGTCGCTTTATGTGGCTGTTGGTTTCATCCCAGGAATGATCA
TGTTAGCAGTTATTTGTCGTTACTTGCCAGACTACATGTACAAATGGTGC
TCCGACATGTGAGCTTTTTGTTGAAAGTTAAAAATCTCAGAGGAGGCGGT
GAACGGTGAACTTTTATTTGGATGGGTGGACGAGTGAAGTCTGTCTTAct
caatatttttgaaatgaaaaaaagaaaggaaCAGACGTACAAAGTCATAA
ATTAAACAAgaatattattttgaaaaactgttGGCTCTTGTGGTGAAAGA
AACAATACAAACGATACTGAATTGGTAGCAGCCAGAAGCATCTCAAACAC
ATGCAGAGTGTGGATTTCTTTACCGGTGCAAACTACACGAAAGAGGCTAA
AAGGCTTACTTATGAAAAAGATTCGACGTTTTCCCTTTTCCAATAGATAA
GGAGCTATTAAGGTTTAGGTGTTAGGGAGGACGAATTTTGTCCCTTTTTG
ACATATCACATACTTATCTCGTGAATATATAGTTGTTTTGTCTCTTATTA
AACCATACTACCCACGCAATATATTTTCTCAACGAGGCTCAGAAAACCTG
AGTTGTAAATTACGACAATTGTGACGTCATTAGACTCAAATCATGACGCC
ATGTAAGGGTTTTCTAACTTGAAAaaagttattattttgaaattatgacG
TAGTATAAATGGGTTTTTGTAACTTTGGTTTTCTGAGCCTCGTTTTCAAC
CTTCTCAAGCAAAATTCTTCTCCTAGAAGAGATCAATCCATAAAAATCAG
ACGAGTATTCATGAtttgcaccactgcaatgactttacgaaattatgcaa
tttttctgggttttgttccacccaatacgtcactttttctattgtttaag
tgacgtattggatggaaaattttaaaagttctctcGACTCTTCAGtcgtg
gtgcatatcatgaataagctTATACAATCTTTTATGCCATCTTCGTCACA
ACTCAATCAATCACATATCACAGGGAAAAGCAGGGAAAAGTTCAGATATC
TTGACCTCGAGAGTATTGGTAATGGAAGATACTTATCAACGGAGCGGTTT
GCAACCAAAGGGCTATATGTACTCTTTAAATTTACCTTTACTCACGGATC
AATGAACATTTGTATACAAAAAGAACAGGCGGGTAACAAACCATTAACAG
AAGGAATCCAAGAAaatttctttaaccctttgagtgccagggtctttttt
tctaagtttttttttaaaaatcgctagttcaaactttaagggcttatatc
tcctgatctagaaag
Run BLAST on NCBI

protein sequence of TCONS_00052781-protein

>TCONS_00052781-protein ID=TCONS_00052781-protein|Name=TCONS_00052781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKNVFASLLQIFVFIQSLVTCIVLASPLTIDLNTNTTTLESIQPSSSSIM
MISSSIVANNSSMNGTASGGGKTDEELARMASLYVAVGFIPGMIMLAVIC
RYLPDYMYKWCSDM
Run BLAST on NCBI

transcript from alignment at scaffold_22:198299..201778-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052781 ID=TCONS_00052781|Name=TCONS_00052781|organism=Clytia hemisphaerica|type=transcript|length=3480bp|location=Sequence derived from alignment at scaffold_22:198299..201778- (Clytia hemisphaerica)
GTAAATGATTAAGTGGCCGCCTTTAATAAATCATTGTTGATTTTTCGTAA
GCAGTTATATAAAACGTATGTATGAAGAAAAATAGTGGGAAGTTTTATTT
GGTATTTATAATAACAATATGACCATGTTCTGATTTCGGTTGTTTGACAT
TTTCGAAAGAGGAGTAAAACTTTACTTTGATTTGATTTTTTGGTTTGAAG
AACAGGCAGTGGATAAAATGAAGAATGTATTTGCTTCTCTGCTCCAAATC
TTTGTTTTTATTCAAAGTAATGATCAACAATTTATGTTTTTTTATATGAA
TATGAAAAAGGGTTTAGTCAATCATGGAGGTATAAAGATAAACAGGAGTT
GAATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTTATGAAAT
AACCAAAAGAAAATATTAGGCTCGCCCGACAAAATGCGACTTTTTAGTAG
AACTCAAAATTGCTCTCTGATGAACATTCTTACTATCAGTATTGAAGATT
TCTAGCCTTCTAATATGCAAATACTAAATAAAACTTCGTCCACGAAACAA
GTTTATGTTCAATTTCGTTATTAAATTTTGTTTTGATAAGATATTTTCTC
AAGCCAGAAAATGAAAAGTTCTTTATAAGCATACACGATTTCAGACTCAC
TTTGTAAACATAAATTTGCTGGAGAATTTTGGAGGAAAGTATCAAGCAAT
AAAGTTCACCTTAAAGAAAACATTGATCGAAAAATCTTATCATTTGATGA
AGGATTGCCAAGTTTACAGGCCTTTTTTTAGTCCAAATATTTTCTTACAC
TGATGTCAGAAACAATGAATCTCGTCTCACCTAATTTCTAACATATAAAT
GAGCCAATATGCAATAAGATTTCATCAATAGACAAACAAGTTCATTAAGA
ATGCAAGACGTATGAGATTGTGAGATTACAAACCTCGTAATTTTTTCAAT
CGTGAGCTTGGTTACATAGTACATACATCTCCTGTTTCTTTATACCTCCA
TGAGTTAATAAACGCTTTTTTGATAGTCCTAGGATTACACTTTTTCATAA
GAACAAACTATATAAGAACAGAAGGCTTCGATGGCCAAAATGTTAAGAGC
ATTATAAGAACATTTTTAGGCTTAAATCTTGAAAAGTTAAGAATGGCTTC
AAAAATTTTAGATGTTCTTATAAAAAAATGTGTACGGGCCTACTAAAGGC
CAATTATATGTTAGATTGGTGTATATCATGGAGTCTGTTAAATAAATCAG
CAGACTGTGTTCGCCAAGAAAAGCTTGAGTTTTTCTTTTTTTTCTTCATG
TTTTTATCAACCAAAACGAAAGAGTACACGTTTTTTTTTTATAAGAACAA
ACTATGTAAGAACATAAGGCTTCGAGGCGCAAAAATTTAAGAACATTCTA
AGAACATTCTAAGNTGTTTTATAAGAACAAACTATATAAGAGCATAAGGC
TTCGATGGCCAAAAATTTAAGAATATTCTAAGAACATTCTAAGGCTTTGG
AGACTTAAAAACATGCATTTTCTTAGGAAATTACATCAAAATGCTCAAAA
AATGCTGAAAATAAGAACATTTTAAGAACATTTTTAGCTTCAAATCCAAA
AAACTAAGAACATCCGAAGGCTTCGAAATTTTTTGACGTTCTTATAAAAA
AAAACGTGTAATCCATATCTAAGCCTATTGCAAAACCATTTTATGCCATT
TTCAAAGTTCTTTCCTTATTTTCTTTTCCACTGGAAAATTCCTATTAATA
GAAAAAACCTATTTTTCGAGACTTTCCTGAAATAATTCTCGAGAACAGTA
ATAGATAAGAAACTTGAGAATTGTCTTCCTTTTCTGATAAATTTCAACAT
TATCATCAACTAAGAACACCATGACTAGGATGATTATGATAAGTACCATG
ACAGAGGCATACTATTATAATAATGTTCTTGTAGAGAAGATGATTTTGAT
AATAAATACGTTCATATTTTCCTTTTCTCAGGTTTGGTCACGTGTATCGT
GTTAGCATCCCCTTTAACCATTGATCTGAACACCAATACCACAACACTGG
AATCAATCCAACCGTCATCCTCGTCAATCATGATGATTTCATCTAGCATT
GTTGCCAATAATTCTTCAATGAACGGTACCGCCTCGGGTGGAGGGAAAAC
AGACGAAGAACTTGCACGAATGGCGTCGCTTTATGTGGCTGTTGGTTTCA
TCCCAGGAATGATCATGTTAGCAGTTATTTGTCGTTACTTGCCAGACTAC
ATGTACAAATGGTGCTCCGACATGTGAGCTTTTTGTTGAAAGTTAAAAAT
CTCAGAGGAGGCGGTGAACGGTGAACTTTTATTTGGATGGGTGGACGAGT
GAAGTCTGTCTTACTCAATATTTTTGAAATGAAAAAAAGAAAGGAACAGA
CGTACAAAGTCATAAATTAAACAAGAATATTATTTTGAAAAACTGTTGGC
TCTTGTGGTGAAAGAAACAATACAAACGATACTGAATTGGTAGCAGCCAG
AAGCATCTCAAACACATGCAGAGTGTGGATTTCTTTACCGGTGCAAACTA
CACGAAAGAGGCTAAAAGGCTTACTTATGAAAAAGATTCGACGTTTTCCC
TTTTCCAATAGATAAGGAGCTATTAAGGTTTAGGTGTTAGGGAGGACGAA
TTTTGTCCCTTTTTGACATATCACATACTTATCTCGTGAATATATAGTTG
TTTTGTCTCTTATTAAACCATACTACCCACGCAATATATTTTCTCAACGA
GGCTCAGAAAACCTGAGTTGTAAATTACGACAATTGTGACGTCATTAGAC
TCAAATCATGACGCCATGTAAGGGTTTTCTAACTTGAAAAAAGTTATTAT
TTTGAAATTATGACGTAGTATAAATGGGTTTTTGTAACTTTGGTTTTCTG
AGCCTCGTTTTCAACCTTCTCAAGCAAAATTCTTCTCCTAGAAGAGATCA
ATCCATAAAAATCAGACGAGTATTCATGATTTGCACCACTGCAATGACTT
TACGAAATTATGCAATTTTTCTGGGTTTTGTTCCACCCAATACGTCACTT
TTTCTATTGTTTAAGTGACGTATTGGATGGAAAATTTTAAAAGTTCTCTC
GACTCTTCAGTCGTGGTGCATATCATGAATAAGCTTATACAATCTTTTAT
GCCATCTTCGTCACAACTCAATCAATCACATATCACAGGGAAAAGCAGGG
AAAAGTTCAGATATCTTGACCTCGAGAGTATTGGTAATGGAAGATACTTA
TCAACGGAGCGGTTTGCAACCAAAGGGCTATATGTACTCTTTAAATTTAC
CTTTACTCACGGATCAATGAACATTTGTATACAAAAAGAACAGGCGGGTA
ACAAACCATTAACAGAAGGAATCCAAGAAAATTTCTTTAACCCTTTGAGT
GCCAGGGTCTTTTTTTCTAAGTTTTTTTTTAAAAATCGCTAGTTCAAACT
TTAAGGGCTTATATCTCCTGATCTAGAAAG

Coding sequence (CDS) from alignment at scaffold_22:198299..201778-

>TCONS_00052781 ID=TCONS_00052781|Name=TCONS_00052781|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_22:198299..201778- (Clytia hemisphaerica)
GTTTGGTCACGTGTATCGTGTTAGCATCCCCTTTAACCATTGATCTGAAC
ACCAATACCACAACACTGGAATCAATCCAACCGTCATCCTCGTCAATCAT
GATGATTTCATCTAGCATTGTTGCCAATAATTCTTCAATGAACGGTACCG
CCTCGGGTGGAGGGAAAACAGACGAAGAACTTGCACGAATGGCGTCGCTT
TATGTGGCTGTTGGTTTCATCCCAGGAATGATCATGTTAGCAGTTATTTG
TCGTTACTTGCCAGACTACATGTACAAATGGTGCTCCGACATGTGAATGA
AGAATGTATTTGCTTCTCTGCTCCAAATCTTTGTTTTTATTCAAAGTTTG
GTCACGTGTATCGTGTTAGCATCCCCTTTAACCATTGATCTGAACACCAA
TACCACAACACTGGAATCAATCCAACCGTCATCCTCGTCAATCATGATGA
TTTCATCTAGCATTGTTGCCAATAATTCTTCAATGAACGGTACCGCCTCG
GGTGGAGGGAAAACAGACGAAGAACTTGCACGAATGGCGTCGCTTTATGT
GGCTGTTGGTTTCATCCCAGGAATGATCATGTTAGCAGTTATTTGTCGTT
ACTTGCCAGACTACATGTACAAATGGTGCTCCGACATGTGAATGAAGAAT
GTATTTGCTTCTCTGCTCCAAATCTTTGTTTTTATTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033361XLOC_033361Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052781-proteinTCONS_00052781-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052781-exon-scaffold_22-1575043694:201513..201778TCONS_00052781-exon-scaffold_22-1575043694:201513..201778Clytia hemisphaericaexon
TCONS_00052781-exon-scaffold_22-1575043694:198299..199797TCONS_00052781-exon-scaffold_22-1575043694:198299..199797Clytia hemisphaericaexon
TCONS_00052781-exon-scaffold_22-1510915933:201513..201778TCONS_00052781-exon-scaffold_22-1510915933:201513..201778Clytia hemisphaericaexon
TCONS_00052781-exon-scaffold_22-1510915933:198299..199797TCONS_00052781-exon-scaffold_22-1510915933:198299..199797Clytia hemisphaericaexon
TCONS_00052781-exon-scaffold_22-1491911889:201513..201778TCONS_00052781-exon-scaffold_22-1491911889:201513..201778Clytia hemisphaericaexon
TCONS_00052781-exon-scaffold_22-1491911889:198299..199797TCONS_00052781-exon-scaffold_22-1491911889:198299..199797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:198299..201778 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170301	0.226004	0.488512	0.989847	47.3758	35.1806	35.3722	36.8642	16.5885	22.8538	7.10392	7.07479	22.8909	17.039	31.7586	31.0112	10.2698	26.2232	15.5844	30.5297	1.91093	1.24158	1.95185	1.54637	2.01534	2.48723	15.7197	10.3437	94.6406	99.8965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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