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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052780 ID=TCONS_00052780|Name=TCONS_00052780|organism=Clytia hemisphaerica|type=transcript|length=1546bp
GCCTTTAATAAATCATTGTTGATTTTTCGTAAGCAGTTATATAAAACGTT
TGGTCACGTGTATCGTGTTAGCATCCCCTTTAACCATTGATCTGAACACC
AATACCACAACACTGGAATCAATCCAACCGTCATCCTCGTCAATCATGAT
GATTTCATCTAGCATTGTTGCCAATAATTCTTCAATGAACGGTACCGCCT
CGGGTGGAGGGAAAACAGACGAAGAACTTGCACGAATGGCGTCGCTTTAT
GTGGCTGTTGGTTTCATCCCAGGAATGATCATGTTAGCAGTTATTTGTCG
TTACTTGCCAGACTACATGTACAAATGGTGCTCCGACATGTGAGCTTTTT
GTTGAAAGTTAAAAATCTCAGAGGAGGCGGTGAACGGTGAACTTTTATTT
GGATGGGTGGACGAGTGAAGTCTGTCTTActcaatatttttgaaatgaaa
aaaagaaaggaaCAGACGTACAAAGTCATAAATTAAACAAgaatattatt
ttgaaaaactgttGGCTCTTGTGGTGAAAGAAACAATACAAACGATACTG
AATTGGTAGCAGCCAGAAGCATCTCAAACACATGCAGAGTGTGGATTTCT
TTACCGGTGCAAACTACACGAAAGAGGCTAAAAGGCTTACTTATGAAAAA
GATTCGACGTTTTCCCTTTTCCAATAGATAAGGAGCTATTAAGGTTTAGG
TGTTAGGGAGGACGAATTTTGTCCCTTTTTGACATATCACATACTTATCT
CGTGAATATATAGTTGTTTTGTCTCTTATTAAACCATACTACCCACGCAA
TATATTTTCTCAACGAGGCTCAGAAAACCTGAGTTGTAAATTACGACAAT
TGTGACGTCATTAGACTCAAATCATGACGCCATGTAAGGGTTTTCTAACT
TGAAAaaagttattattttgaaattatgacGTAGTATAAATGGGTTTTTG
TAACTTTGGTTTTCTGAGCCTCGTTTTCAACCTTCTCAAGCAAAATTCTT
CTCCTAGAAGAGATCAATCCATAAAAATCAGACGAGTATTCATGAtttgc
accactgcaatgactttacgaaattatgcaatttttctgggttttgttcc
acccaatacgtcactttttctattgtttaagtgacgtattggatggaaaa
ttttaaaagttctctcGACTCTTCAGtcgtggtgcatatcatgaataagc
tTATACAATCTTTTATGCCATCTTCGTCACAACTCAATCAATCACATATC
ACAGGGAAAAGCAGGGAAAAGTTCAGATATCTTGACCTCGAGAGTATTGG
TAATGGAAGATACTTATCAACGGAGCGGTTTGCAACCAAAGGGCTATATG
TACTCTTTAAATTTACCTTTACTCACGGATCAATGAACATTTGTATACAA
AAAGAACAGGCGGGTAACAAACCATTAACAGAAGGAATCCAAGAAaattt
ctttaaccctttgagtgccagggtctttttttctaagtttttttttaaaa
atcgctagttcaaactttaagggcttatatctcctgatctagaaag Run BLAST on NCBI transcript from alignment at scaffold_22:198299..201760- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052780 ID=TCONS_00052780|Name=TCONS_00052780|organism=Clytia hemisphaerica|type=transcript|length=3462bp|location=Sequence derived from alignment at scaffold_22:198299..201760- (Clytia hemisphaerica)
GCCTTTAATAAATCATTGTTGATTTTTCGTAAGCAGTTATATAAAACGTA
TGTATGAAGAAAAATAGTGGGAAGTTTTATTTGGTATTTATAATAACAAT
ATGACCATGTTCTGATTTCGGTTGTTTGACATTTTCGAAAGAGGAGTAAA
ACTTTACTTTGATTTGATTTTTTGGTTTGAAGAACAGGCAGTGGATAAAA
TGAAGAATGTATTTGCTTCTCTGCTCCAAATCTTTGTTTTTATTCAAAGT
AATGATCAACAATTTATGTTTTTTTATATGAATATGAAAAAGGGTTTAGT
CAATCATGGAGGTATAAAGATAAACAGGAGTTGAATTTGTCGGTAATTGG
TCGTTAAAGTCTTTTGATTTCTTTTATGAAATAACCAAAAGAAAATATTA
GGCTCGCCCGACAAAATGCGACTTTTTAGTAGAACTCAAAATTGCTCTCT
GATGAACATTCTTACTATCAGTATTGAAGATTTCTAGCCTTCTAATATGC
AAATACTAAATAAAACTTCGTCCACGAAACAAGTTTATGTTCAATTTCGT
TATTAAATTTTGTTTTGATAAGATATTTTCTCAAGCCAGAAAATGAAAAG
TTCTTTATAAGCATACACGATTTCAGACTCACTTTGTAAACATAAATTTG
CTGGAGAATTTTGGAGGAAAGTATCAAGCAATAAAGTTCACCTTAAAGAA
AACATTGATCGAAAAATCTTATCATTTGATGAAGGATTGCCAAGTTTACA
GGCCTTTTTTTAGTCCAAATATTTTCTTACACTGATGTCAGAAACAATGA
ATCTCGTCTCACCTAATTTCTAACATATAAATGAGCCAATATGCAATAAG
ATTTCATCAATAGACAAACAAGTTCATTAAGAATGCAAGACGTATGAGAT
TGTGAGATTACAAACCTCGTAATTTTTTCAATCGTGAGCTTGGTTACATA
GTACATACATCTCCTGTTTCTTTATACCTCCATGAGTTAATAAACGCTTT
TTTGATAGTCCTAGGATTACACTTTTTCATAAGAACAAACTATATAAGAA
CAGAAGGCTTCGATGGCCAAAATGTTAAGAGCATTATAAGAACATTTTTA
GGCTTAAATCTTGAAAAGTTAAGAATGGCTTCAAAAATTTTAGATGTTCT
TATAAAAAAATGTGTACGGGCCTACTAAAGGCCAATTATATGTTAGATTG
GTGTATATCATGGAGTCTGTTAAATAAATCAGCAGACTGTGTTCGCCAAG
AAAAGCTTGAGTTTTTCTTTTTTTTCTTCATGTTTTTATCAACCAAAACG
AAAGAGTACACGTTTTTTTTTTATAAGAACAAACTATGTAAGAACATAAG
GCTTCGAGGCGCAAAAATTTAAGAACATTCTAAGAACATTCTAAGNTGTT
TTATAAGAACAAACTATATAAGAGCATAAGGCTTCGATGGCCAAAAATTT
AAGAATATTCTAAGAACATTCTAAGGCTTTGGAGACTTAAAAACATGCAT
TTTCTTAGGAAATTACATCAAAATGCTCAAAAAATGCTGAAAATAAGAAC
ATTTTAAGAACATTTTTAGCTTCAAATCCAAAAAACTAAGAACATCCGAA
GGCTTCGAAATTTTTTGACGTTCTTATAAAAAAAAACGTGTAATCCATAT
CTAAGCCTATTGCAAAACCATTTTATGCCATTTTCAAAGTTCTTTCCTTA
TTTTCTTTTCCACTGGAAAATTCCTATTAATAGAAAAAACCTATTTTTCG
AGACTTTCCTGAAATAATTCTCGAGAACAGTAATAGATAAGAAACTTGAG
AATTGTCTTCCTTTTCTGATAAATTTCAACATTATCATCAACTAAGAACA
CCATGACTAGGATGATTATGATAAGTACCATGACAGAGGCATACTATTAT
AATAATGTTCTTGTAGAGAAGATGATTTTGATAATAAATACGTTCATATT
TTCCTTTTCTCAGGTTTGGTCACGTGTATCGTGTTAGCATCCCCTTTAAC
CATTGATCTGAACACCAATACCACAACACTGGAATCAATCCAACCGTCAT
CCTCGTCAATCATGATGATTTCATCTAGCATTGTTGCCAATAATTCTTCA
ATGAACGGTACCGCCTCGGGTGGAGGGAAAACAGACGAAGAACTTGCACG
AATGGCGTCGCTTTATGTGGCTGTTGGTTTCATCCCAGGAATGATCATGT
TAGCAGTTATTTGTCGTTACTTGCCAGACTACATGTACAAATGGTGCTCC
GACATGTGAGCTTTTTGTTGAAAGTTAAAAATCTCAGAGGAGGCGGTGAA
CGGTGAACTTTTATTTGGATGGGTGGACGAGTGAAGTCTGTCTTACTCAA
TATTTTTGAAATGAAAAAAAGAAAGGAACAGACGTACAAAGTCATAAATT
AAACAAGAATATTATTTTGAAAAACTGTTGGCTCTTGTGGTGAAAGAAAC
AATACAAACGATACTGAATTGGTAGCAGCCAGAAGCATCTCAAACACATG
CAGAGTGTGGATTTCTTTACCGGTGCAAACTACACGAAAGAGGCTAAAAG
GCTTACTTATGAAAAAGATTCGACGTTTTCCCTTTTCCAATAGATAAGGA
GCTATTAAGGTTTAGGTGTTAGGGAGGACGAATTTTGTCCCTTTTTGACA
TATCACATACTTATCTCGTGAATATATAGTTGTTTTGTCTCTTATTAAAC
CATACTACCCACGCAATATATTTTCTCAACGAGGCTCAGAAAACCTGAGT
TGTAAATTACGACAATTGTGACGTCATTAGACTCAAATCATGACGCCATG
TAAGGGTTTTCTAACTTGAAAAAAGTTATTATTTTGAAATTATGACGTAG
TATAAATGGGTTTTTGTAACTTTGGTTTTCTGAGCCTCGTTTTCAACCTT
CTCAAGCAAAATTCTTCTCCTAGAAGAGATCAATCCATAAAAATCAGACG
AGTATTCATGATTTGCACCACTGCAATGACTTTACGAAATTATGCAATTT
TTCTGGGTTTTGTTCCACCCAATACGTCACTTTTTCTATTGTTTAAGTGA
CGTATTGGATGGAAAATTTTAAAAGTTCTCTCGACTCTTCAGTCGTGGTG
CATATCATGAATAAGCTTATACAATCTTTTATGCCATCTTCGTCACAACT
CAATCAATCACATATCACAGGGAAAAGCAGGGAAAAGTTCAGATATCTTG
ACCTCGAGAGTATTGGTAATGGAAGATACTTATCAACGGAGCGGTTTGCA
ACCAAAGGGCTATATGTACTCTTTAAATTTACCTTTACTCACGGATCAAT
GAACATTTGTATACAAAAAGAACAGGCGGGTAACAAACCATTAACAGAAG
GAATCCAAGAAAATTTCTTTAACCCTTTGAGTGCCAGGGTCTTTTTTTCT
AAGTTTTTTTTTAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTCC
TGATCTAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052780-exon-scaffold_22-1575043694:201714..201760 | TCONS_00052780-exon-scaffold_22-1575043694:201714..201760 | Clytia hemisphaerica | exon |
| TCONS_00052780-exon-scaffold_22-1575043694:198299..199797 | TCONS_00052780-exon-scaffold_22-1575043694:198299..199797 | Clytia hemisphaerica | exon |
| TCONS_00052780-exon-scaffold_22-1510915933:201714..201760 | TCONS_00052780-exon-scaffold_22-1510915933:201714..201760 | Clytia hemisphaerica | exon |
| TCONS_00052780-exon-scaffold_22-1510915933:198299..199797 | TCONS_00052780-exon-scaffold_22-1510915933:198299..199797 | Clytia hemisphaerica | exon |
| TCONS_00052780-exon-scaffold_22-1491911889:201714..201760 | TCONS_00052780-exon-scaffold_22-1491911889:201714..201760 | Clytia hemisphaerica | exon |
| TCONS_00052780-exon-scaffold_22-1491911889:198299..199797 | TCONS_00052780-exon-scaffold_22-1491911889:198299..199797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:198299..201760 - |
Blast
The following BLAST results are available for this feature:
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