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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052753 ID=TCONS_00052753|Name=TCONS_00052753|organism=Clytia hemisphaerica|type=transcript|length=1964bpRun BLAST on NCBI protein sequence of TCONS_00052753-protein >TCONS_00052753-protein ID=TCONS_00052753-protein|Name=TCONS_00052753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp MESISKDWVDMADTGTCDSRWIFRDYKCEKYMFAEDYDRNEIKMRVLESHRun BLAST on NCBI transcript from alignment at scaffold_22:144381..159972+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052753 ID=TCONS_00052753|Name=TCONS_00052753|organism=Clytia hemisphaerica|type=transcript|length=15592bp|location=Sequence derived from alignment at scaffold_22:144381..159972+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_22:144381..159972+ >TCONS_00052753 ID=TCONS_00052753|Name=TCONS_00052753|organism=Clytia hemisphaerica|type=CDS|length=20493bp|location=Sequence derived from alignment at scaffold_22:144381..159972+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052753 vs. Swiss-Prot (Human)
Match: GNPAT (Dihydroxyacetone phosphate acyltransferase OS=Homo sapiens GN=GNPAT PE=1 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 8.133e-91 Identity = 190/540 (35.19%), Postives = 301/540 (55.74%), Query Frame = 1
Query: 220 EIKMRVLESHRVKDTIEKRKRETGIHQSQSLQEAAQIIDEIAHTFSLGTIRFMAYSLIKIIKKLFQRVLVNKEGIKQFNECAKMTPIVLVPTHSSYFDFLLASAICFALDLPLPAIVAGQDFLNIAVVNHLLRGSGAFYMRRSFASDTFYRSIFTEYVQQILCIGERPVEFFPEGTRSRSGKALQPKLGLLSMVLESCFHGFVNDVSFIPMSISYEKITEEMLYAFELVGIPKPKESLSGLLKARSVLTTDYGTVSVTFGKPMSLMEYCGKQIDGMDYVRIPRCERHLKIFGRGAQEM-KIAKYFGEKLIFQQQQNLVIYPRAVVTYIMMSQQNDVYVEHLAFKVDKIGHLLRELGFRTYGFEDLLTNSSGIEQAVKFSDMVLTCDHETKIISRTTSAFTDPKLRTTALYNAFGKSE---ELLSKSLAYIYSSCQRNKLVHPFLLPSLVLHSIKVRNDL--NGARNLFCFLKQVFRIEFIFDPDKTGEQDFNETLPKLQSIGLVSMTTADNQVELCSKCSFEIDFLMGLVQPFLDAYMIV 1821
+IK VL S + I++ +E+ +E ++I+DE++H LG IRF A++L K+ K++F +V VN+EGI++ + P+VL+P+H SY DFL+ S + + DLP+P I AG DFL + +V LLR SGAF+MRR+F + Y ++F+EYV+ +L G PVEFF EGTRSRS K L PK GLL++V+E F V D +P+SISY+KI EE LY +EL+G+PKPKES +GLLKAR +L+ ++G++ V FG P+SL ++ Y +PR I + +++M K+ Q +N+V+ P ++ +++ + + + L K + L + G GF + ++ E+ V S ++ H S S D L G SE L+ + + + S RN+L++ F+ PSLV ++++ + F FL+ VF EFIF P T +DF E L + +TT D + + K + ++FL+GL +PF+++Y I+
Sbjct: 70 DIKCSVLNSEEIHYVIKQLSKESLQSVDVLREEVSEILDEMSHKLRLGAIRFCAFTLSKVFKQIFSKVCVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFDTYLVPISISYDKILEETLYVYELLGVPKPKESTTGLLKARKILSENFGSIHVYFGDPVSLRSLAAGRMSRSSYNLVPR-----YIPQKQSEDMHAFVTEVAYKMELLQIENMVLSPWTLIVAVLLQNRPSMDFDALVEKTLWLKGLTQAFG----GFL-IWPDNKPAEEVVPASILL----H-----SNIASLVKD----QVILKVDSGDSEVVDGLMLQHITLLMCSAYRNQLLNIFVRPSLVAVALQMTPGFRKEDVYSCFRFLRDVFADEFIFLPGNT-LKDFEEGCYLLCKSEAIQVTTKD--ILVTEKGNTVLEFLVGLFKPFVESYQII 583 The following BLAST results are available for this feature:
BLAST of TCONS_00052753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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