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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052747 ID=TCONS_00052747|Name=TCONS_00052747|organism=Clytia hemisphaerica|type=transcript|length=1702bp
TGTAAGAATACACAGTCTTCATTTTTTGTCTAATTAAATACAGCTAGAAA
CacaaattattttcagttgcttataaaagaaagattGTTTTAGTGCAAGT
TCTTTGTACATTCATAAACGGCGATAAGTATATAAGGAATGGTTGATGTA
TGtgcaaaaaatataaagaattcTCGCTTGTGTGCTAGATAATAAGCTGT
CTGTTAAGTGTTAGTTGTTTATGAACGGTACAGGAAAGGCTTGATGGAAA
TCTCCTGATTAAAAATCGAATTATTCTGCCATGGCGGAAATAGAAGAAAA
TGTAGCGCTCTCGCAGCATGGTTATCCACCGCCACCGAGCAGCCAACCAC
CACCAGGACCCGCTTCGAATCTGAACAACCCGGCTTACGAAGACTCGATA
TTCATACCGTTGGAAAATCACGGAAATGCACCGgcaacaaaaaattcatt
ttccaaCGATTTATTCATTAAAGATGAGGATCAAGAAGCAAACAAAGTAA
ACCCACCACCGCCCTCTTCAAATCCACCCACCTTCAACAATAACGCCCAT
GAATCGGTCAGCCAACGCCATTCTGCTCCACCCTCAATGCCACCCCCTGT
ATTCTCGTCACCGACCAAAACTCCGACTCCCACCGAAACTCCACCGAAAA
AtaccgaaaacgaaagtgaggAGTCAAGTGACGACAACGATGATAAtgat
aatgatgacgtcacttattacaatgaaagtagttttgaagactCAAAtac
gaaaaagaagaaaagtctTCATGGAATTTTGAAACACAGGAGTAGTGTTC
GCGACCCGAACGCACAACAAAAGAGCGTGACATTCGGTGCAATGCCGAAA
AGACGGGAAGACCCGAACCCATGCATGCTACTGACGCTATTTGTAACGTT
TATCATTGCAATGATAGGATTTATCCTAGTCCTGATGGTCATTCGCGGGT
CTATCGAGACAAAGTGTGATTGTGATAGTAAAACTATCAGTTGTCCTGTT
GGGTGGAGTGCAGGACCAACCGGTACGTGTTATGGGGTAGTTTCGAGGGA
TAGCCAAACATACCAAGACGCTCGATTGTCATGCGCAGACCACGGTGCTT
ATTTAGTAAGCCTGGAAACTAATGATGAATCTGATTGGTTctataaaaac
attttgaagccCAGGAAAGAGTTGAATGTGAATTTCAAAGAGATTTTTCT
TGGTATTAAACCGAACAGTTATAAATATGAGTGGGAAAGTAATATCAGGT
TTTACTCCTGGAAAAAATATATTCCATCTTATAGAAACAGTTCTTGTTTT
GCTATTGCTGGAGAAAACTGGATTCGAGCTAATTGTACCATAGCACACGA
CTTTTACTGTGAAAAGTACAAATACGTTTGAAATTCTGCgcagaaaaaag
acaaaaaatcacCACTGGTAAAACAGTGATAGCCTTCTCTAATGTAATCC
TTTCTAAAGGTGAGTGTGTAAGAATAAAGTGTTACAAGCCGAAACATGGA
CACGTTATGAAGAATTCTTAGGACCTAAAGTCTTGTGGTTATGGGAAATT
AAAGCTCCCCTCCATCATTTGGTCTTATGAGAAGTCtattttaactttaa
ctttacaggatttttcataacttattctatataaaatttgtatattttca
tattaacttattattgcattggaaaaaaatacaaacaattTGGCAAGTAT
AT Run BLAST on NCBI protein sequence of TCONS_00052747-protein >TCONS_00052747-protein ID=TCONS_00052747-protein|Name=TCONS_00052747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MAEIEENVALSQHGYPPPPSSQPPPGPASNLNNPAYEDSIFIPLENHGNA
PATKNSFSNDLFIKDEDQEANKVNPPPPSSNPPTFNNNAHESVSQRHSAP
PSMPPPVFSSPTKTPTPTETPPKNTENESEESSDDNDDNDNDDVTYYNES
SFEDSNTKKKKSLHGILKHRSSVRDPNAQQKSVTFGAMPKRREDPNPCML
LTLFVTFIIAMIGFILVLMVIRGSIETKCDCDSKTISCPVGWSAGPTGTC
YGVVSRDSQTYQDARLSCADHGAYLVSLETNDESDWFYKNILKPRKELNV
NFKEIFLGIKPNSYKYEWESNIRFYSWKKYIPSYRNSSCFAIAGENWIRA
NCTIAHDFYCEKYKYV Run BLAST on NCBI transcript from alignment at scaffold_219:108163..109864 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052747 ID=TCONS_00052747|Name=TCONS_00052747|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at scaffold_219:108163..109864 (Clytia hemisphaerica)
ATATACTTGCCAaattgtttgtatttttttccaatgcaataataagttaa
tatgaaaatatacaaattttatatagaataagttatgaaaaatcctgtaa
agttaaagttaaaataGACTTCTCATAAGACCAAATGATGGAGGGGAGCT
TTAATTTCCCATAACCACAAGACTTTAGGTCCTAAGAATTCTTCATAACG
TGTCCATGTTTCGGCTTGTAACACTTTATTCTTACACACTCACCTTTAGA
AAGGATTACATTAGAGAAGGCTATCACTGTTTTACCAGTGgtgatttttt
gtcttttttctgcGCAGAATTTCAAACGTATTTGTACTTTTCACAGTAAA
AGTCGTGTGCTATGGTACAATTAGCTCGAATCCAGTTTTCTCCAGCAATA
GCAAAACAAGAACTGTTTCTATAAGATGGAATATATTTTTTCCAGGAGTA
AAACCTGATATTACTTTCCCACTCATATTTATAACTGTTCGGTTTAATAC
CAAGAAAAATCTCTTTGAAATTCACATTCAACTCTTTCCTGggcttcaaa
atgtttttatagAACCAATCAGATTCATCATTAGTTTCCAGGCTTACTAA
ATAAGCACCGTGGTCTGCGCATGACAATCGAGCGTCTTGGTATGTTTGGC
TATCCCTCGAAACTACCCCATAACACGTACCGGTTGGTCCTGCACTCCAC
CCAACAGGACAACTGATAGTTTTACTATCACAATCACACTTTGTCTCGAT
AGACCCGCGAATGACCATCAGGACTAGGATAAATCCTATCATTGCAATGA
TAAACGTTACAAATAGCGTCAGTAGCATGCATGGGTTCGGGTCTTCCCGT
CTTTTCGGCATTGCACCGAATGTCACGCTCTTTTGTTGTGCGTTCGGGTC
GCGAACACTACTCCTGTGTTTCAAAATTCCATGAagacttttcttctttt
tcgtaTTTGagtcttcaaaactactttcattgtaataagtgacgtcatca
ttatcaTTATCATCGTTGTCGTCACTTGACTcctcactttcgttttcggt
aTTTTTCGGTGGAGTTTCGGTGGGAGTCGGAGTTTTGGTCGGTGACGAGA
ATACAGGGGGTGGCATTGAGGGTGGAGCAGAATGGCGTTGGCTGACCGAT
TCATGGGCGTTATTGTTGAAGGTGGGTGGATTTGAAGAGGGCGGTGGTGG
GTTTACTTTGTTTGCTTCTTGATCCTCATCTTTAATGAATAAATCGttgg
aaaatgaattttttgttgcCGGTGCATTTCCGTGATTTTCCAACGGTATG
AATATCGAGTCTTCGTAAGCCGGGTTGTTCAGATTCGAAGCGGGTCCTGG
TGGTGGTTGGCTGCTCGGTGGCGGTGGATAACCATGCTGCGAGAGCGCTA
CATTTTCTTCTATTTCCGCCATGGCAGAATAATTCGATTTTTAATCAGGA
GATTTCCATCAAGCCTTTCCTGTACCGTTCATAAACAACTAACACTTAAC
AGACAGCTTATTATCTAGCACACAAGCGAgaattctttatattttttgca
CATACATCAACCATTCCTTATATACTTATCGCCGTTTATGAATGTACAAA
GAACTTGCACTAAAACaatctttcttttataagcaactgaaaataatttg
tGTTTCTAGCTGTATTTAATTAGACAAAAAATGAAGACTGTGTATTCTTA
CA Coding sequence (CDS) from alignment at scaffold_219:108163..109864 >TCONS_00052747 ID=TCONS_00052747|Name=TCONS_00052747|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_219:108163..109864 (Clytia hemisphaerica)
TCAAACGTATTTGTACTTTTCACAGTAAAAGTCGTGTGCTATGGTACAAT
TAGCTCGAATCCAGTTTTCTCCAGCAATAGCAAAACAAGAACTGTTTCTA
TAAGATGGAATATATTTTTTCCAGGAGTAAAACCTGATATTACTTTCCCA
CTCATATTTATAACTGTTCGGTTTAATACCAAGAAAAATCTCTTTGAAAT
TCACATTCAACTCTTTCCTGggcttcaaaatgtttttatagAACCAATCA
GATTCATCATTAGTTTCCAGGCTTACTAAATAAGCACCGTGGTCTGCGCA
TGACAATCGAGCGTCTTGGTATGTTTGGCTATCCCTCGAAACTACCCCAT
AACACGTACCGGTTGGTCCTGCACTCCACCCAACAGGACAACTGATAGTT
TTACTATCACAATCACACTTTGTCTCGATAGACCCGCGAATGACCATCAG
GACTAGGATAAATCCTATCATTGCAATGATAAACGTTACAAATAGCGTCA
GTAGCATGCATGGGTTCGGGTCTTCCCGTCTTTTCGGCATTGCACCGAAT
GTCACGCTCTTTTGTTGTGCGTTCGGGTCGCGAACACTACTCCTGTGTTT
CAAAATTCCATGAagacttttcttctttttcgtaTTTGagtcttcaaaac
tactttcattgtaataagtgacgtcatcattatcaTTATCATCGTTGTCG
TCACTTGACTcctcactttcgttttcggtaTTTTTCGGTGGAGTTTCGGT
GGGAGTCGGAGTTTTGGTCGGTGACGAGAATACAGGGGGTGGCATTGAGG
GTGGAGCAGAATGGCGTTGGCTGACCGATTCATGGGCGTTATTGTTGAAG
GTGGGTGGATTTGAAGAGGGCGGTGGTGGGTTTACTTTGTTTGCTTCTTG
ATCCTCATCTTTAATGAATAAATCGttggaaaatgaattttttgttgcCG
GTGCATTTCCGTGATTTTCCAACGGTATGAATATCGAGTCTTCGTAAGCC
GGGTTGTTCAGATTCGAAGCGGGTCCTGGTGGTGGTTGGCTGCTCGGTGG
CGGTGGATAACCATGCTGCGAGAGCGCTACATTTTCTTCTATTTCCGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052747-exon-scaffold_219-1491911889:108163..109864 | TCONS_00052747-exon-scaffold_219-1491911889:108163..109864 | Clytia hemisphaerica | exon |
| TCONS_00052747-exon-scaffold_219-1510915933:108163..109864 | TCONS_00052747-exon-scaffold_219-1510915933:108163..109864 | Clytia hemisphaerica | exon |
| TCONS_00052747-exon-scaffold_219-1575043694:108163..109864 | TCONS_00052747-exon-scaffold_219-1575043694:108163..109864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_219 | supercontig | scaffold_219:108163..109864 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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