TCONS_00052746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052746
Unique NameTCONS_00052746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052746 ID=TCONS_00052746|Name=TCONS_00052746|organism=Clytia hemisphaerica|type=transcript|length=302bp
aaaaaaatcattagtataaaattaatcaaaatctaTTACAAAATTATAGA
AATAGTACTTAATCAATAAACCCCGAATTAGTAATAAACGTATCAAAAAA
TAGTCATATTATATTAAAGAAAGtataattttaataatttgtttgtcatt
tataaaattttccattgtttcaaTCACTGTCATTTAAAACCCCGGTTAGA
TATTTTTACAGTTTGTTTATTGCAAATGAAAATATCCTaatgaaaaaatt
caataaataaaaaatctaagtGTTTCTAAGATTCTAagtgttcaaaatta
ca
Run BLAST on NCBI

transcript from alignment at scaffold_219:107498..107799

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052746 ID=TCONS_00052746|Name=TCONS_00052746|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_219:107498..107799 (Clytia hemisphaerica)
tgtaattttgaacactTAGAATCTTAGAAACacttagattttttatttat
tgaattttttcattAGGATATTTTCATTTGCAATAAACAAACTGTAAAAA
TATCTAACCGGGGTTTTAAATGACAGTGAttgaaacaatggaaaatttta
taaatgacaaacaaattattaaaattataCTTTCTTTAATATAATATGAC
TATTTTTTGATACGTTTATTACTAATTCGGGGTTTATTGATTAAGTACTA
TTTCTATAATTTTGTAAtagattttgattaattttatactaatgattttt
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033349XLOC_033349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052746-exon-scaffold_219-1491911889:107498..107799TCONS_00052746-exon-scaffold_219-1491911889:107498..107799Clytia hemisphaericaexon
TCONS_00052746-exon-scaffold_219-1510915933:107498..107799TCONS_00052746-exon-scaffold_219-1510915933:107498..107799Clytia hemisphaericaexon
TCONS_00052746-exon-scaffold_219-1575043694:107498..107799TCONS_00052746-exon-scaffold_219-1575043694:107498..107799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:107498..107799 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	18.1084	17.5827	15.7137	9.6316	14.5682	15.3748	9.58667	8.46392	2.50591	4.11646	3.24566	2.55427	4.00482	3.22521	6.48117	3.25241	0	0	0.873827	0	0	3.02863	3.13504	0.557633	1.26883	0.507138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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