TCONS_00052743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052743
Unique NameTCONS_00052743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052743 ID=TCONS_00052743|Name=TCONS_00052743|organism=Clytia hemisphaerica|type=transcript|length=342bp
ACGTATCAAAAAATAGTCATATTATATTAAAGAAAGtataattttaataa
tttgtttgtcatttataaaattttccattgtttcaaTCACTGTCATTTAA
AACCCCGGTTAGATATTTTTACAGTTTGTTTATTGCAAATGAAAATATCC
TaatgaaaaaattcaataaataaaaattctaaGTGTTTCTAAGATTCTAa
gtgttcaaaattacaaaaaactcGCGCAAAAAAGAAAATCCTCCAAATAA
AGCAAACATGGTATTGACAAGGAAGCTAAAATAACAAGGATGCAATTCAA
AAACCACAACTTTCGCAAAATGAtatttaaagaaagtttttt
Run BLAST on NCBI

transcript from alignment at scaffold_219:104191..104532

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052743 ID=TCONS_00052743|Name=TCONS_00052743|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_219:104191..104532 (Clytia hemisphaerica)
aaaaaactttctttaaataTCATTTTGCGAAAGTTGTGGTTTTTGAATTG
CATCCTTGTTATTTTAGCTTCCTTGTCAATACCATGTTTGCTTTATTTGG
AGGATTTTCTTTTTTGCGCgagttttttgtaattttgaacactTAGAATC
TTAGAAACACttagaatttttatttattgaattttttcattAGGATATTT
TCATTTGCAATAAACAAACTGTAAAAATATCTAACCGGGGTTTTAAATGA
CAGTGAttgaaacaatggaaaattttataaatgacaaacaaattattaaa
attataCTTTCTTTAATATAATATGACTATTTTTTGATACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033346XLOC_033346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052743-exon-scaffold_219-1491911889:104191..104532TCONS_00052743-exon-scaffold_219-1491911889:104191..104532Clytia hemisphaericaexon
TCONS_00052743-exon-scaffold_219-1510915933:104191..104532TCONS_00052743-exon-scaffold_219-1510915933:104191..104532Clytia hemisphaericaexon
TCONS_00052743-exon-scaffold_219-1575043694:104191..104532TCONS_00052743-exon-scaffold_219-1575043694:104191..104532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:104191..104532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266749	0.520244	0	0	3.87108	4.74737	3.74682	3.21064	14.9777	8.72748	1.93719	4.2013	3.56799	2.09282	1.66616	1.95059	1.40173	2.05247	2.26848	1.58067	0.257908	0.75479	1.22339	2.78061	0	1.20272	0.365765	0	1.48035	2.35983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top