TCONS_00052734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052734
Unique NameTCONS_00052734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052734 ID=TCONS_00052734|Name=TCONS_00052734|organism=Clytia hemisphaerica|type=transcript|length=1184bp
ATCTAAGCATTAGCTAGCAGATCATCACATTTGCAATACAAAGCAAATCT
TCAAATCTCAAAATGGCCGACACTGCTTCAAAATACGCGGTCAAACTCAA
GACCAACTTCGATGACCCAAAATGGGTAAACCGTCACAGATTCATGTTCA
ACTTTTTGGACATTAACGGCAACGGAAAAATCACTTTGGATGAAATTGTC
TCCAAAGCTTCGGATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCA
AACAAAACGTCATCAAGATGCTATTGAGaactttttcaagaaaatcggTA
TGGCTTATGGCAAAGAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAG
AATTTGGCCACACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTT
GATTCGCGACTGGGGAGAAGCTGTTTTCGACATTTTCGACAAAGACGGTT
CAGGTTCGATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGA
ATTTGTCCATCAGACGAAGACGCCGAGAAGACCTTCAAACATTGCGATTT
GGACAACAGTGGCAAACTTGATGTTGATGAGATGACCAGACAACATCAAG
TTTGCCACTGTTGTCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCCG
CGTCTGATGCACAGATTCCAGAGACTCTTCCATAGGCCTTCCATTCGTCC
AAACTGATTGTACCGCTTCCATCTTTATCAAAAATGTCGAACACAACGTC
TCCCCATCGACGAATCAAGGTGGTCTTGTTTTGGGACCACAATTTCAAAT
CGTTGGTAGCAAGTCGTTTCCATCCTTCAAGGAATTCTGGGAATTCAACT
TCTTTTCCGTAATCCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATC
TTGATGGCGTTGGGTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATAT
CATCCGAAGCTTTGGAGACAATTTCATCCAATGTGATTTTTCCGTTACCG
TTGATGTCCAAAAAATTGAACATGAATCTATGACGGTTGATCCATTTTGG
ATTATTAAAATCGGGTTTAAGTTTGACGGCGTATTTGGATCCCGTTTCTT
GTTGAGCCATGGTTGTCAAAGATTGTTTCTAAAAAGCTTCAGAAAGTATT
GATCTTTTAGCTATTGCACTTGGTTGTGTTCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_219:123293..127613-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052734 ID=TCONS_00052734|Name=TCONS_00052734|organism=Clytia hemisphaerica|type=transcript|length=4321bp|location=Sequence derived from alignment at scaffold_219:123293..127613- (Clytia hemisphaerica)
ATCTAAGCATTAGCTAGCAGATCATCACATTTGCAATACAAAGCAAATCT
TCAAATCTCAAAATGGCCGACACTGCTTCAAAATACGCGGTCAAACTCAA
GACCAACTTCGATGACCCAAAATGGGTAAACCGTCACAGATTCATGTTCA
ACTTTTTGGACATTAACGGCAACGGAAAAATCACTTTGGATGAAATTGTC
TCCAAAGCTTCGGATGACATTTGCGCCAAACTCGGAGCTACTCCAGCTCA
AACAAAACGTCATCAAGATGCTATTGAGAACTTTTTCAAGAAAATCGGTA
TGGCTTATGGCAAAGAAGTCGAATTCCCACAGTTCGTTGAAGGGTGGAAG
AATTTGGCCACACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTT
GATTCGCGACTGGGGAGAAGCTGTTTTCGACATTTTCGACAAAGACGGTT
CAGGTTCGATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGA
ATTTGTCCATCAGACGAAGACGCCGAGAAGACCTTCAAACATTGCGATTT
GGACAACAGTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGG
GATTCTGGTACACCCTGGACCCCAATGCTGATGGACTCTATGGCAACTTC
GTTCCCTAAACATCTTATCATGCTAACTGATACATCTCTCTTCAAAAACT
ATTTTCACATTTTTATTACGCCAAAATCTGTAGATTGTATTTGACTTTCA
TTTCGTAGTAACGAAGAAAATACTTGTACTGCATGTGTTCAATTTATCGT
TATGAGTTTTTTCAATGACACCTTTCGTATAAGAACTATGACAGGTTGTC
GGCTGTGTTCCTTACCTAGGCATAAATATTCCTTGTTGTGAAATCGACAG
ACAAATTCTAAATCATTTTTATTTTAGCTCAATTGAGCTAATTGCTCTTA
AGTAAAATATAAAAGACCCTCAGTGTTGTAGAAGTATATTATAAAGCCAA
AGCCTTTTCTCGCAGACATTGCCATTCCTCTACTGTTTCTTAAGTCTTCG
AGTATCTTCCTATTTTTTACTAGGGGAAGCATCTTGGGAAAGCATCTTAA
AATCTCAAGACTGAAAAGTGCTATGACCATGAAATTTTAACCAGTGATAG
ATAATGATGTGAGAATTTGGCTGCAAGCTTGTATTATCAATACCTAACAT
ACTTGTCGTGATAAAAATTTCAGAAGTTATCACAAAAGTTTTTTTAAGGG
GCCTCTTTGCCCCCCCCCCAAGATACTCGAGGAGTTAAGAACACTTGAAT
GTAACGGATATTTAGTGACTAGCGAGTTAAGTATATTGGAGGACATCGAG
GGTGACGGTAGTGAAGTCGACACAAAACAGTTGTTCATTGTTGATAGTTG
ATGTACGGCTCTTTATCGCCGTTGCTTATCTAAACAGACGACGGTATTTT
GGTGTTTTTTACCGTCGTCGAGCAAAGTGGACGGCGAATTCGGCGACATG
TGAACTTCGATTTATCTCAAATACATAAACTTGCTATTACTAGTCAGTCC
CCTACCCTGTCTCGGGTAAGGAATGCACTGTACTATCTTTTCTCTTTGGT
GTTCTACCATGTTCTACAGCCAAACCGTAGAAGAATATCGCGCCTAAAAA
AATTTCTTAGCTATGAGTGAGCTTAAAAATTTGCATTACTTCTTATGAGG
GTCAGATTTTTACGAAAAGTGTAATTTTCTTCTTCATCAGCCTTATCGGT
GTCCCGGGGGGGTACTAGGGTTGCGAGCTGACGGGGGAGTGCCGTCCGAC
TTTCGAACTTTGGACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAAA
ATTTTGGGAATTTTACGACCCTTAACGGGGACAAATTTGACCAATTTTGA
CCGGATTTCGATCTTTCAGGGGGTAAAAAGTTGAAGTTTTCTTTCCCTTA
GTGGGACTGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTG
TTCAAAAAAGGTACCCTTAAGGGCGCCACATACCGTACCCTCCATTTGCC
TAAGTACCCCCTCCCCCCCGGATCGGTGTTAGGATCATTTAGCGATGTTC
CCTAAAAGGAGATCTTAAGAACTTGAAAACACGACATCGAGTTTTCCTCG
ATAATTAACATAGTTTTTCAACGTTACTTAAATGTTTTAGACTAGACGCT
AGTAAAGTTGAACGTCAAAAACAATAAAACTCTTTAAAATGTCAAAAAAA
AAACGTTTTGGTGTTTTATAGCCAGCTCCTGAACATCGCATAGCGTTTTT
ATTACAACTATATGGTCAGTTTCGAAAAGGCTGATTTCTGGGCCTGTATT
CAAGTGAGGATTTCACGTAACTAAAGCCCTTGCAAGGGAGTTTTTGTACA
GCAATAGAAAAGTGACAAATGCAATGCTTCACCTCTAGGAAAAGTAGCCT
AATCGTAATTTATTCTACATAAGGCTAGCAAAAAACGAGTTGATAATTGA
CTTGGTATTTTTATGTTTTTTTATTGATTTTTTTTTAATTTACTCATCTA
AGAATTTGTGTCGCCGTTGCCCCTAGGACGACATTGTGTAAAAGTGCCAT
GTTCTTCAAATAAACCTAAAATGGGCCTTTCAAGTCTCCTTTGTACCGTT
GAGAGGCCTCGTTATTGCCAAATGAAAATAAACACTTTTTCAGTGACGTC
AAAATGTTTTGGCTTGACCAGTTTTTCCACACATGTATCTTGAGTGAATC
TCTACGGTGTTTTATTCCTTTGTTGTGGCTCGTGGACAACTTAAAACACT
AAAACGAGACTGGAAATTTTTGCGTGAATGGAGACGATTTAACTTAATTT
TTACATAAATTTCCACTTTCTCAAAATGTGTAATTTTTTGTCCTAGGGAT
GAGCTTTAGTATCAAAAACCTTTTAATTTACTTATTGATTTTACAATTTG
GCCTATGAAAGTTGCGAAAGAAACCTAATTTAAGCGCCACTGACAGTTAC
TAACCTGCTCATGGCCCCCGTCACCGGGGGGGCCAGGGGGGCCATGGCCC
CTAACCCAACCCACCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATC
TTATATATACCGTTTAGAGGGGTGAAATAAGGGCAAAAAGTCGAAAATTT
TCTTCGTCGCCCAACCATGGTGGGCGACATATTTTTTTTGGCCCCTTCAA
TTCGATGCGCACGCCGGGGGCCATGCTGCTCAAACTTCTTGTTTCAAAGA
TGAACAATACAACGAAAGGATACAAATAGTTGAACTAAGTAAGGATCATA
GATACAAAAAATCGAACTTTAATCATTTTTCGGGCTATTGTTTGTTTGGT
AGTTCTTGTTCATTGTGAAACAAAAAACAAATCAAAGATTTTCTGGTTGT
AAGGCGTGTGAGTATATTTGATATAATGATTGTGTAATGGTCATATTTTA
CAATTATGTATATGTTTTGATGTATAGGTTGTTGATGCATCCGTTTAGGG
AACAAAGTTGCCATAGAGACCATCAGCTTGTGGATCCAAGGTGTACCAGA
ATCCCAAATGTTGTCTGGTCATTTCATCGACATCAAGTTTGCCACTGTTG
TCCAAATCGCAATGTTTGAAGGTCTGCTCGGCGTCCGCGTCTGATGCACA
GATTCCAGAGACTCTTCCATAGGCCTTCCATTCGTCCAAACTGATTGTAC
CGCTTCCATCTTTATCAAAAATGTCGAACACAACGTCTCCCCATCGACGA
ATCAAGGTGGTCTTGTTTTGGGACCACAATTTCAAATCGTTGGTAGCAAG
TCGTTTCCATCCTTCAAGGAATTCTGGGAATTCAACTTCTTTTCCGTAAT
CCATACCAATGGCTTTGAAGAAAGCTTCAACAGCATCTTGATGGCGTTGG
GTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATATCATCCGAAGCTTT
GGAGACAATTTCATCCAATGTGATTTTTCCGTTACCGTTGATGTCCAAAA
AATTGAACATGAATCTATGACGGTTGATCCATTTTGGATTATTAAAATCG
GGTTTAAGTTTGACGGCGTATTTGGATCCCGTTTCTTGTTGAGCCATGGT
TGTCAAAGATTGTTTCTAAAAAGCTTCAGAAAGTATTGATCTTTTAGCTA
TTGCACTTGGTTGTGTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033337XLOC_033337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052734-exon-scaffold_219-1575043694:127020..127613TCONS_00052734-exon-scaffold_219-1575043694:127020..127613Clytia hemisphaericaexon
TCONS_00052734-exon-scaffold_219-1575043694:123293..123882TCONS_00052734-exon-scaffold_219-1575043694:123293..123882Clytia hemisphaericaexon
TCONS_00052734-exon-scaffold_219-1510915933:127020..127613TCONS_00052734-exon-scaffold_219-1510915933:127020..127613Clytia hemisphaericaexon
TCONS_00052734-exon-scaffold_219-1510915933:123293..123882TCONS_00052734-exon-scaffold_219-1510915933:123293..123882Clytia hemisphaericaexon
TCONS_00052734-exon-scaffold_219-1491911889:127020..127613TCONS_00052734-exon-scaffold_219-1491911889:127020..127613Clytia hemisphaericaexon
TCONS_00052734-exon-scaffold_219-1491911889:123293..123882TCONS_00052734-exon-scaffold_219-1491911889:123293..123882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:123293..127613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.7095	71.2045	84.2035	95.0231	0.658141	0.134339	0.100305	0.269871	2.05403	0.784747	1.14977	1.1938	59.4623	47.7043	69.5546	66.9814	97.5544	88.221	0.0604055	0.485172	763.239	555.215	406.211	554.843	699.598	307.591	1.24926	1.93584	10.3611	10.4416
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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