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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052733 ID=TCONS_00052733|Name=TCONS_00052733|organism=Clytia hemisphaerica|type=transcript|length=5154bpRun BLAST on NCBI protein sequence of TCONS_00052733-protein >TCONS_00052733-protein ID=TCONS_00052733-protein|Name=TCONS_00052733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1402bp MAFSRSQDQRRQSNTSSLSALEDDPLLRDCIGLRQRLLDTEKSLQNLTISRun BLAST on NCBI transcript from alignment at scaffold_219:114814..151721- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052733 ID=TCONS_00052733|Name=TCONS_00052733|organism=Clytia hemisphaerica|type=transcript|length=36908bp|location=Sequence derived from alignment at scaffold_219:114814..151721- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_219:114814..151721- >TCONS_00052733 ID=TCONS_00052733|Name=TCONS_00052733|organism=Clytia hemisphaerica|type=CDS|length=92598bp|location=Sequence derived from alignment at scaffold_219:114814..151721- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052733 vs. Swiss-Prot (Human)
Match: CCD18 (Coiled-coil domain-containing protein 18 OS=Homo sapiens GN=CCDC18 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.248e-26 Identity = 331/1417 (23.36%), Postives = 648/1417 (45.73%), Query Frame = 2
Query: 170 EDDPLLRDCIGLRQRLLDTEKSLQNLTISTATPKISPNDSLRAARNETDKSILSDHAPILTLADLTPSGSVEDTLDTHPSHQSSKQAHNRPYSSLGEIDSGKAFQYEKDFNPITSLTQCRHHEDINTFRQKILVLREENSKMFLQNNKLMTELEKRTYKLQDCQSQLQEMNIAVKESKELKGCSVERMNE----LDSQLKRKTQVIRQME-------KIVGELRTHLNQQDTKE-----------------REEKERFDTELDSKE--KHIQELTSKIA----SIQKKDE-------------ERLKE---FHTKEVK-MKEELISVQQERNDFRLEADKMKQDNFKQQEQLTLIKSKTIELQN-------VAIELSATKSENTKLKTLIDKQQIQIKEYNTEIANYKNHVEKLEGMVQ----------------KVQEDTTTPRPDSGIGILSENHQDGNQSGTPRSIIADLKLKLAMKDTEMHKLKAIVANNSILQQKFKSDCDIENVNIKGLRSE--------LTSVVERSRKGDIKQMELEH--TITRLQEDISSKTRQL----VELNDRLNDKTHLVQSLEMKLDQKNGKLLEYQKELTNKDEHYEELEHQLQKSIKSLSDSMTKTKVSITEKDRQLSESKSLLETYSSQIKHLENALDVHNQETEATDALVHKIKNLHADHCHELENEISKWRQVSESKTQECIEMESLQHELLKEKVGLEESVKDLKDYVIKMEELDGEKKNMIKAYKDKIKSIQGKANEDXXXXXXXXXXXDHCKTQLQNALQEYDQSKQEHQKLIDNKTKSIDFLTDDLNIKTKHITEIEE-------SYKKALEMLEQSQKRIADLEDTSLRHVNDVAMEKQTNEELNQEIQ-------------------------LLHQKIDDLNG-------DIDLYQEQVETMNQALDEAKHKFKEVGVTLQNRDVKLMENSKQIQK---LINEIEKL-NLTKTELTNQLNGYKTNTLNLEKTIQIQKEKYKACSEKCQGLENRVSNAHDKLRGYEASLQNIESTKIKTNEKLE--YTQ-RLLTTSQGESNMKIKELNQCRLQIHEMENAISESEWKVKQKSALYTQLEMSCKQERSELEKQISTLTFEVDELKGMLQEKENKIKDQSSNYEELRIDYDERNLLCEDLRNQLRMQEEANIHASSEVKILKGELNQL------IEKVHQQSE------------FENEANIVKEQYHHLNTKVQNLQNQLMTSQQTIINLTNELEESHSMMSQKESDCTRLARELGASQVREAQEKSRLNQELRETIQNHDFKFSQKLEEMDSLREKNDDLVTTQQQDILKLRLALQRSEDETRLAKNDLERRKERVGELETSVRELTFELQEQQQRCKELDEMLVIREAETARHSARASGLER 3964
E++ LL + LR L TE SLQ+L ++ +SP+++ SD+AP PS S + LD PSH + PY ++ +I SG + ++K + ++I + R+K+ LR++N+ + QN+ LMT+ E ++L +++ +++ ES + + SV + E L++++ + +V+R+ E K+V E L Q++KE R E++R + +++E K Q+ K+A +Q ++E +RL+E + E++ +KE+L +++E N+ + + M N + QLT + ++L++ + + + +EN +LK + Q ++ EI + + + LE ++ K Q + + + D IG N + +I++L++KLA+K+ E+ KL A + N + Q + E+ + L +E + SV ++++ KQ E E +T + E++ +K Q+ +L + +T Q ++ +L +K + + E+T K LE QL++ I + S SI K+ +L + L+E + +I+ LE + N E E K K +H + E+E +I + E K Q+ E E L ++ + + ++ L D ++ + + +K+NM K + +K++Q + +E++ ++QL ++L+ CK +L L + + +K++ +K + K++ + L +L IK + E E + ++ +ML+Q R +LEDT + +EKQ ++ L QE+Q L QK+ +L G ++D Y+E++ M + + K + + L D+ L + +++K + E+EKL + T+TELT L +K + LE + NAH +L+ LQ + K LE YT + LT E M+I++ Q ++ EM+ A+ E W++KQ++A T L+M+ ++ R E+E++I +L+G L++ E ++K+ + E L N ++ + QLR +E + E+ LK E+ + +E V ++ E E + +EQ + +T++ ++Q + +Q+ I L++ELE+ + +K++ LA ELGAS+VREA ++R+ E++ K S E++SL+E + + Q++ K +++ + + LE+ K + E + +V L ++Q++ + + +E L+ +E+E R A+ SG E+
Sbjct: 14 EEESLLANVASLRHELKITEWSLQSLGEELSS--VSPSEN-------------SDYAP-------NPSRSEKLILDVQPSHPGL--LNYSPYENVCKI-SGSSTDFQKKPRDKMFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAK-----VSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL--QESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEAN----------KLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGI-EELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYS--------SIAAKNAELEQE--LMEK-NEKIRSLETNI---NTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESL-DRLLTESKGEMKKENMKK--DEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTK------LEKQVSK-LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEAL-------------------------QKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ---ELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKII-------KLEGTLEKSELELKECNKQIESL-------NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIK--------KLSA---EVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1310 The following BLAST results are available for this feature:
BLAST of TCONS_00052733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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