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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052726 ID=TCONS_00052726|Name=TCONS_00052726|organism=Clytia hemisphaerica|type=transcript|length=1280bpRun BLAST on NCBI protein sequence of TCONS_00052726-protein >TCONS_00052726-protein ID=TCONS_00052726-protein|Name=TCONS_00052726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp MFSREEKEKEKENNLALIEELRRRLLSRGPELQDFDEEDIEKVQKSDGFVRun BLAST on NCBI transcript from alignment at scaffold_219:35415..45788+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052726 ID=TCONS_00052726|Name=TCONS_00052726|organism=Clytia hemisphaerica|type=transcript|length=10374bp|location=Sequence derived from alignment at scaffold_219:35415..45788+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_219:35415..45788+ >TCONS_00052726 ID=TCONS_00052726|Name=TCONS_00052726|organism=Clytia hemisphaerica|type=CDS|length=13902bp|location=Sequence derived from alignment at scaffold_219:35415..45788+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052726 vs. Swiss-Prot (Human)
Match: MSPD2 (Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 8.350e-50 Identity = 83/243 (34.16%), Postives = 144/243 (59.26%), Query Frame = 3
Query: 381 FDEEDIEKVQKSDGFVWQFLIHQHKDIDKALEMMVECLKWRESFGLNEITERNIDRHLFEIGFLFPRNTDKNGNLLLHFLANRYRKELYNIEEVKKLFAFALEKLCENNSGKKVTMVFDMQDAGFANMDMDLIKFLITCFQTYFPNVLEYLIVFETPWILITGWKLVKTWMNSDGISKIKFVKKNEINQFIAPKNLLCTMGGKDDYVYKYPPQLFTAKTQNNIIEANGVSSNHLTVNQTDVFS 1109
+D D+E++Q+ D +V +L +H +D+ L+M+ E +WR+ +N++ E +I R L EIG ++ DK GN L + K+ I + KKL AF LE+ + +GK VT++FD+ + G ++DMD ++F+I CF+ Y+P L +++F+ PW++ +K+VKTW+ + +S +KF KNE+ +++ + L MGG D + Y YPP L Q + E ++S T ++ D+ S
Sbjct: 32 YDARDVERLQQDDNWVESYLSWRHNIVDETLKMLDESFQWRKEISVNDLNESSIPRWLLEIGVIYLHGYDKEGNKLFWIRVKYHVKDQKTILDKKKLIAFWLERYAKRENGKPVTVMFDLSETGINSIDMDFVRFIINCFKVYYPKYLSKIVIFDMPWLMNAAFKIVKTWLGPEAVSLLKFTSKNEVQDYVSVEYLPPHMGGTDPFKYSYPP-LVDDDFQTPLCENGPITSEDETSSKEDIES 273 The following BLAST results are available for this feature:
BLAST of TCONS_00052726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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