|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052725 ID=TCONS_00052725|Name=TCONS_00052725|organism=Clytia hemisphaerica|type=transcript|length=2292bp
TACCATTCAACTTGTTGATTTATCAATTATGGAAGAAGGACTAGCTATTT
TCATTGTTACTTTATTGGCAATCATCGGTGCTGGATTCACTTTATTCACG
TTAGCCATTATTCTTTTCGATTTACATCTTCGTCAAAAACCATCCACAAT
CCCTATTGTTAGTTTTTTGGTGGCTGCCACAATACAAGGCGCTTTGGCGT
TCCCCATGTACATCTACCGAAAGTTATCCGCCAATAGAGATAGATTAGGA
ATATGCGATCTTTATCGTGTGCCCTATATCTTTTGTGGACATATTTTGAC
TATGAGTTTACTGTTTATATCGTTGGATCGATTATTTGTCATCCTGAGGC
CGTTTGTATACCAAGATTACGTTTCTACAAAACGATTTTCTGTCTTGGTG
GTTGTGTTTTGGATTGTGACTTTGTTGGTCGATTCCATTCCTTTTATTAC
AGATGTGGATACAGCAGGGGAATGTGTTTACAATCTGACCAATCACAAAT
GGGGGATTTTTGTCATTATACTATACATCATAATACCCCTTATAACTATT
ATTGTATCATATTCGATTATTTGGCGGAAAGCAGTTTTGATTGCACTTGA
GGATCAGAAAATTCAAATGCGAACTTTATCTGATGATTCAGTGAATACAG
ACCGAAAACACAAGCGTATCAAATATTCGGTTGTTGAGTTAAAGGCTACA
AAAACTTCAGTGGTTTTGATCGCAACATACATCATATGTTGGGGACCTTT
AGGCTTTTTTTACATGGTGGATCATTTTTGTAATAGTTGTTACTCGAATA
ATGGACAGTTAAGTGAATTTCGGACAAGCATTAAAATTTTGGCGTTGATG
TCTTGTTTTATTGCACCGGCTGTCTATTGTTGGTGGAATGAAGCTTTTCG
AATGGCGACGCGAAATGCATTCCGAAAGTTTAAAGGGATTTGTGGATGCT
GGAATTAATTTACATACTAAACGTATTAACGTTACTTCCTATTTTCAAAG
ACGCACACTTATTACATTGACATTGTATTTCGTCTCATTAGGTCAAGGTT
TCCTTCTTCCTATCAGTGAGAAAAACAGTCCTTCAGCGTAAGAGTACCat
gatagatttaaaaaagcccgaagggctagataaggGCTAGATagagtgct
tttgctgaaaagtgtgccgaggagtcacgtgacattacaatagaatttca
gcgcttgaccaatccagaagcttcgcaggttttcgagaacaatagcagca
atatttttttgcgatattcactttttttgcttggaagagcgtaaagcacg
ccatctagcccttcgggctttataaatctatggtacCATGCTGTATTGTT
GACAGTTTAATATTTCAactaaactcgaacccagtccatTAGTTCACTTT
CATTTATGATTTTGAGAACGCTCAGGAATTGTATCACGTCCAGCAGtaaa
actaggtcacagtgtggatctaaaccacactgaaacgNAATACAGACCGA
AAACACAAGCGTATCAAATATTCGGTTGTTGAGTTAAAGGCTACAAAAAC
TTCAGTGGTTTTGATCGCAACATACATCATATGTTGGGGACCTTTAGGCT
TTTTTTACATGGTGGATCATTTTTGTAATAGTTGTTACTCGAATAATGGA
CAGTTAAGTGAATTTCGGACAAGCATTAAAATTTTGGCGTTGATGTCTTG
TTTTATTGCACCGGCTGTCTATTGTTGGTGGAATGAAGCTTTTCGAATGG
CGACGCGAAATGCATTCCGAAAGTTTAAAGGGATTTGTGGATGCTGGAAT
TAATTTACATACTAAACGTATTAACGTTACTTCCTATTTTCAAAGACGCA
CACTTATTACATTGACATTGTATTTCGTCTCATTAGGTCAAGGTTTCCTT
CTTCCTATCAGTGAGAAAAACAGTCCTTCAGCGTAAGAGTACCatgatag
atttaaaaaagcccgaagggctagataaggGCTAGATagagtgcttttgc
tgaaaagtgtgccgaggagtcacgtgacattacaatagaatttcagcgct
tgaccaatccagaagcttcgcaggttttcgagaacaatagcagcaatatt
tttttgcgatattcactttttttgcttggaagagcgtaaagcacgccatc
tagcccttcgggctttataaatctatggtacCATGCTGTATTGTTGACAG
TTTAATATTTCAactaaactcgaacccagtccatTAGTTCACTTTCATTT
ATGATTTTGAGAACGCTCAGGAATTGTATCACGTCCAGCAGt Run BLAST on NCBI protein sequence of TCONS_00052725-protein >TCONS_00052725-protein ID=TCONS_00052725-protein|Name=TCONS_00052725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
TIQLVDLSIMEEGLAIFIVTLLAIIGAGFTLFTLAIILFDLHLRQKPSTI
PIVSFLVAATIQGALAFPMYIYRKLSANRDRLGICDLYRVPYIFCGHILT
MSLLFISLDRLFVILRPFVYQDYVSTKRFSVLVVVFWIVTLLVDSIPFIT
DVDTAGECVYNLTNHKWGIFVIILYIIIPLITIIVSYSIIWRKAVLIALE
DQKIQMRTLSDDSVNTDRKHKRIKYSVVELKATKTSVVLIATYIICWGPL
GFFYMVDHFCNSCYSNNGQLSEFRTSIKILALMSCFIAPAVYCWWNEAFR
MATRNAFRKFKGICGCWN Run BLAST on NCBI transcript from alignment at scaffold_218:877309..879600 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052725 ID=TCONS_00052725|Name=TCONS_00052725|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at scaffold_218:877309..879600 (Clytia hemisphaerica)
aCTGCTGGACGTGATACAATTCCTGAGCGTTCTCAAAATCATAAATGAAA
GTGAACTAatggactgggttcgagtttagtTGAAATATTAAACTGTCAAC
AATACAGCATGgtaccatagatttataaagcccgaagggctagatggcgt
gctttacgctcttccaagcaaaaaaagtgaatatcgcaaaaaaatattgc
tgctattgttctcgaaaacctgcgaagcttctggattggtcaagcgctga
aattctattgtaatgtcacgtgactcctcggcacacttttcagcaaaagc
actctATCTAGCccttatctagcccttcgggcttttttaaatctatcatG
GTACTCTTACGCTGAAGGACTGTTTTTCTCACTGATAGGAAGAAGGAAAC
CTTGACCTAATGAGACGAAATACAATGTCAATGTAATAAGTGTGCGTCTT
TGAAAATAGGAAGTAACGTTAATACGTTTAGTATGTAAATTAATTCCAGC
ATCCACAAATCCCTTTAAACTTTCGGAATGCATTTCGCGTCGCCATTCGA
AAAGCTTCATTCCACCAACAATAGACAGCCGGTGCAATAAAACAAGACAT
CAACGCCAAAATTTTAATGCTTGTCCGAAATTCACTTAACTGTCCATTAT
TCGAGTAACAACTATTACAAAAATGATCCACCATGTAAAAAAAGCCTAAA
GGTCCCCAACATATGATGTATGTTGCGATCAAAACCACTGAAGTTTTTGT
AGCCTTTAACTCAACAACCGAATATTTGATACGCTTGTGTTTTCGGTCTG
TATTNcgtttcagtgtggtttagatccacactgtgacctagttttaCTGC
TGGACGTGATACAATTCCTGAGCGTTCTCAAAATCATAAATGAAAGTGAA
CTAatggactgggttcgagtttagtTGAAATATTAAACTGTCAACAATAC
AGCATGgtaccatagatttataaagcccgaagggctagatggcgtgcttt
acgctcttccaagcaaaaaaagtgaatatcgcaaaaaaatattgctgcta
ttgttctcgaaaacctgcgaagcttctggattggtcaagcgctgaaattc
tattgtaatgtcacgtgactcctcggcacacttttcagcaaaagcactct
ATCTAGCccttatctagcccttcgggcttttttaaatctatcatGGTACT
CTTACGCTGAAGGACTGTTTTTCTCACTGATAGGAAGAAGGAAACCTTGA
CCTAATGAGACGAAATACAATGTCAATGTAATAAGTGTGCGTCTTTGAAA
ATAGGAAGTAACGTTAATACGTTTAGTATGTAAATTAATTCCAGCATCCA
CAAATCCCTTTAAACTTTCGGAATGCATTTCGCGTCGCCATTCGAAAAGC
TTCATTCCACCAACAATAGACAGCCGGTGCAATAAAACAAGACATCAACG
CCAAAATTTTAATGCTTGTCCGAAATTCACTTAACTGTCCATTATTCGAG
TAACAACTATTACAAAAATGATCCACCATGTAAAAAAAGCCTAAAGGTCC
CCAACATATGATGTATGTTGCGATCAAAACCACTGAAGTTTTTGTAGCCT
TTAACTCAACAACCGAATATTTGATACGCTTGTGTTTTCGGTCTGTATTC
ACTGAATCATCAGATAAAGTTCGCATTTGAATTTTCTGATCCTCAAGTGC
AATCAAAACTGCTTTCCGCCAAATAATCGAATATGATACAATAATAGTTA
TAAGGGGTATTATGATGTATAGTATAATGACAAAAATCCCCCATTTGTGA
TTGGTCAGATTGTAAACACATTCCCCTGCTGTATCCACATCTGTAATAAA
AGGAATGGAATCGACCAACAAAGTCACAATCCAAAACACAACCACCAAGA
CAGAAAATCGTTTTGTAGAAACGTAATCTTGGTATACAAACGGCCTCAGG
ATGACAAATAATCGATCCAACGATATAAACAGTAAACTCATAGTCAAAAT
ATGTCCACAAAAGATATAGGGCACACGATAAAGATCGCATATTCCTAATC
TATCTCTATTGGCGGATAACTTTCGGTAGATGTACATGGGGAACGCCAAA
GCGCCTTGTATTGTGGCAGCCACCAAAAAACTAACAATAGGGATTGTGGA
TGGTTTTTGACGAAGATGTAAATCGAAAAGAATAATGGCTAACGTGAATA
AAGTGAATCCAGCACCGATGATTGCCAATAAAGTAACAATGAAAATAGCT
AGTCCTTCTTCCATAATTGATAAATCAACAAGTTGAATGGTA Coding sequence (CDS) from alignment at scaffold_218:877309..879600 >TCONS_00052725 ID=TCONS_00052725|Name=TCONS_00052725|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_218:877309..879600 (Clytia hemisphaerica)
TTAATTCCAGCATCCACAAATCCCTTTAAACTTTCGGAATGCATTTCGCG
TCGCCATTCGAAAAGCTTCATTCCACCAACAATAGACAGCCGGTGCAATA
AAACAAGACATCAACGCCAAAATTTTAATGCTTGTCCGAAATTCACTTAA
CTGTCCATTATTCGAGTAACAACTATTACAAAAATGATCCACCATGTAAA
AAAAGCCTAAAGGTCCCCAACATATGATGTATGTTGCGATCAAAACCACT
GAAGTTTTTGTAGCCTTTAACTCAACAACCGAATATTTGATACGCTTGTG
TTTTCGGTCTGTATTCACTGAATCATCAGATAAAGTTCGCATTTGAATTT
TCTGATCCTCAAGTGCAATCAAAACTGCTTTCCGCCAAATAATCGAATAT
GATACAATAATAGTTATAAGGGGTATTATGATGTATAGTATAATGACAAA
AATCCCCCATTTGTGATTGGTCAGATTGTAAACACATTCCCCTGCTGTAT
CCACATCTGTAATAAAAGGAATGGAATCGACCAACAAAGTCACAATCCAA
AACACAACCACCAAGACAGAAAATCGTTTTGTAGAAACGTAATCTTGGTA
TACAAACGGCCTCAGGATGACAAATAATCGATCCAACGATATAAACAGTA
AACTCATAGTCAAAATATGTCCACAAAAGATATAGGGCACACGATAAAGA
TCGCATATTCCTAATCTATCTCTATTGGCGGATAACTTTCGGTAGATGTA
CATGGGGAACGCCAAAGCGCCTTGTATTGTGGCAGCCACCAAAAAACTAA
CAATAGGGATTGTGGATGGTTTTTGACGAAGATGTAAATCGAAAAGAATA
ATGGCTAACGTGAATAAAGTGAATCCAGCACCGATGATTGCCAATAAAGT
AACAATGAAAATAGCTAGTCCTTCTTCCATAATTGATAAATCAACAAGTT
GAATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052725-exon-scaffold_218-1491911889:877309..879600 | TCONS_00052725-exon-scaffold_218-1491911889:877309..879600 | Clytia hemisphaerica | exon |
| TCONS_00052725-exon-scaffold_218-1510915933:877309..879600 | TCONS_00052725-exon-scaffold_218-1510915933:877309..879600 | Clytia hemisphaerica | exon |
| TCONS_00052725-exon-scaffold_218-1575043694:877309..879600 | TCONS_00052725-exon-scaffold_218-1575043694:877309..879600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:877309..879600 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
