TCONS_00052724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052724
Unique NameTCONS_00052724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052724 ID=TCONS_00052724|Name=TCONS_00052724|organism=Clytia hemisphaerica|type=transcript|length=692bp
GCCAGACCTGATATACACTTATTATAATAGATTGTATGTGAAATGTAATA
AAGTTGGTATGAATTTCATTTAATAATTATGTCTGCAAAGAATAGCCACA
ACGTGACATCAAGTTAGGGGTATCTCGCTGTTATAATTACACATAGAAGT
AACAAGATTGCAATAAAcattaTACAAAACTTAATAACATAATGAACGTT
TTTATATTTAGTTTCTTTATCATGTGGTAAGTTCAGTGTaatgagatttt
tttatgatgatGCAAATGTAGGCCACACCTCAAGTGTTTTATAAAAGGCA
TGTTTGTAGCAAACCAACTGAGGGTTCCCAAATTGAACCCCTTCTAAATC
TNTAAGTGTTTTATAAAAAGCATGTTTGTAGCAAACCAACTGAGGGTTCC
CAAATTGAACCCCTTCTAAATCTACAAGAGCAGCCgccataattttttga
aatatctgttctttttttccaggagagtaaattttatggataaatctacG
AGAGACTTCCCTTAAAACAaccaggtaaaatccagggggtcgccttaaag
acatctgttcttagaatccaggagcacattttaaggaaaaacacacacaa
ttttccagcggacaatCTGTTCAAAGAATCCAGaagctaaattgtgaaaa
acacaaccagatgccagatttttttccagggagcttcataat
Run BLAST on NCBI

protein sequence of TCONS_00052724-protein

>TCONS_00052724-protein ID=TCONS_00052724-protein|Name=TCONS_00052724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSLRRPPGFYLVVLREVSRRFIHKIYSPGKKEQIFQKIMAAALVDLEGVQ
FGNPQLVCYKHAFYKTLXDLEGVQFGNPQLVCYKHAFYKTLEVWPTFASS
Run BLAST on NCBI

transcript from alignment at scaffold_218:822761..823452

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052724 ID=TCONS_00052724|Name=TCONS_00052724|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at scaffold_218:822761..823452 (Clytia hemisphaerica)
attatgaagctccctggaaaaaaatctggcatctggttgtgtttttcaca
atttagcttCTGGATTCTTTGAACAGattgtccgctggaaaattgtgtgt
gtttttccttaaaatgtgctcctggattctaagaacagatgtctttaagg
cgaccccctggattttacctggtTGTTTTAAGGGAAGTCTCTCgtagatt
tatccataaaatttactctcctggaaaaaaagaacagatatttcaaaaaa
ttatggcGGCTGCTCTTGTAGATTTAGAAGGGGTTCAATTTGGGAACCCT
CAGTTGGTTTGCTACAAACATGCTTTTTATAAAACACTTANAGATTTAGA
AGGGGTTCAATTTGGGAACCCTCAGTTGGTTTGCTACAAACATGCCTTTT
ATAAAACACTTGAGGTGTGGCCTACATTTGCatcatcataaaaaaatctc
attACACTGAACTTACCACATGATAAAGAAACTAAATATAAAAACGTTCA
TTATGTTATTAAGTTTTGTAtaatgTTTATTGCAATCTTGTTACTTCTAT
GTGTAATTATAACAGCGAGATACCCCTAACTTGATGTCACGTTGTGGCTA
TTCTTTGCAGACATAATTATTAAATGAAATTCATACCAACTTTATTACAT
TTCACATACAATCTATTATAATAAGTGTATATCAGGTCTGGC

Coding sequence (CDS) from alignment at scaffold_218:822761..823452

>TCONS_00052724 ID=TCONS_00052724|Name=TCONS_00052724|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_218:822761..823452 (Clytia hemisphaerica)
atgtctttaaggcgaccccctggattttacctggtTGTTTTAAGGGAAGT
CTCTCgtagatttatccataaaatttactctcctggaaaaaaagaacaga
tatttcaaaaaattatggcGGCTGCTCTTGTAGATTTAGAAGGGGTTCAA
TTTGGGAACCCTCAGTTGGTTTGCTACAAACATGCTTTTTATAAAACACT
TANAGATTTAGAAGGGGTTCAATTTGGGAACCCTCAGTTGGTTTGCTACA
AACATGCCTTTTATAAAACACTTGAGGTGTGGCCTACATTTGCatcatca
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033328XLOC_033328Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052724-proteinTCONS_00052724-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052724-exon-scaffold_218-1491911889:822761..823452TCONS_00052724-exon-scaffold_218-1491911889:822761..823452Clytia hemisphaericaexon
TCONS_00052724-exon-scaffold_218-1510915933:822761..823452TCONS_00052724-exon-scaffold_218-1510915933:822761..823452Clytia hemisphaericaexon
TCONS_00052724-exon-scaffold_218-1575043694:822761..823452TCONS_00052724-exon-scaffold_218-1575043694:822761..823452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:822761..823452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170904	0.0716322	0.260934	0.678099	0.218806	0.0901405	0.204398	0.492755	0.420276	0.514803	0	0.177513	0.159499	0.348425	0.322392	0.495609	7.8965	8.89775	0.0861054	0.0817072	5.63872	7.8116	0	0.590255	0.328038	0.508052	1.22031	1.60959	0.268424	0.269308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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