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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052719 ID=TCONS_00052719|Name=TCONS_00052719|organism=Clytia hemisphaerica|type=transcript|length=1438bp
gggTTAATCAAAATCTCTAGTAGGGGTGTTTATACTGATGGGAGAGCATC
AAGCAGCAAGAATTCCGCAGTGAATTATAGGATGTATTGGAGACCATTAA
TTGGCCAGTCGATGATATTTCTAGTATCTCTTATAGGCATTTATGGCGAC
AACAGGAATAACATTTCTTTTCCGCTGATTGATTTTTTCAAGCACCAGAA
CGTTAATTTTCGTACCGGTGACGAGGAGCCGCGTAATAACCTGTGCACCT
CCACTACTTCCCCGTACAGAACGTGTAGTTGTGATAAAGAACATTGTTCT
GAAGAGCGAAGGTGTTGTTATGATTATCTATGGGATCCAGAAAAGCCCGT
CAGTATGAGTGCATACACAGAACGACTACTAGCAAGACCTCTACATCGAC
AAATGGCGTGCCATAGAgttctttttgacttttctttcGTCATGGTTGAT
CAGTGTTTATTAAGAGACGACCATTGGTTGATTGGAAAATGCGAAGGGGA
TAAGTTTGAGggagttgatgacgtcatacaAACACTACCGGTGATGGGAA
TTAACGATCTCTTGTATCGAAACAAGCATTGCGCGCTTTGCAATGGAATT
CTGAATTTCAAAGAAGTCGACATAAATGTAACATGTTCTGATGAATTCAA
AGATGGATCATTACAAAGATACCTTGAGAAGAAATTCTCCAAATGTCAAA
TAAATCTGCAAGCAGACGAGGGTCGATATGATAGGACTTGTAAAGACACA
GCGTGCAGCAAAGCCCATATAAATCTTTGTCATTATTTCATGGATAATTT
TACCACCATGGATACTAATCCAACGAAAAGACAGATATTCAAAAATGTGT
TTTGCAGACATTGCAACTTCATGGACATACGCCAATTGGGAAGGTCTTGG
TCAAAGACGTTGACGCTTaactattttcaaaacttagTGGCAGGTTGTCC
AGAAAATATGGTTTTTGACATGCAACTTGCATCTTGTGTCCCGTATAAAT
GTGGTCCGGGATACACTATCATTGATCACCGTTgcaaaaagaataaaatc
atTTCTATTGGCGACAGTAGTAGTTGTCCGAAAACATGTACTTATCGACA
ATATTTCGTTTTCAAAGAACAACCTACGATTGCTAAAGACAGGCAAGACC
TTTTGAATACTTTCGAGAATTACTCCTTAGTGTTTACGAATGCTTCGACC
AGCCTGTATGAAATGCCTTTCAATGAAACAGCACTCAGTATAGTAATGTC
TCACAATTATTCACCTACTATGACAATTCTTGCCACAACATCACAATTTC
ACGTCTCTAAACTTCACATGCTTAGTGTCAATCAGTTCACAAGTAAAGGA
CTTTGTACAGGTCCCATGGTTTTGTTTGCAAGACAACAGCTTACAGAAAA
ACCAAATTGCATATGTGAAGAGTTGACCTTGAGGAGAA Run BLAST on NCBI protein sequence of TCONS_00052719-protein >TCONS_00052719-protein ID=TCONS_00052719-protein|Name=TCONS_00052719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
GLIKISSRGVYTDGRASSSKNSAVNYRMYWRPLIGQSMIFLVSLIGIYGD
NRNNISFPLIDFFKHQNVNFRTGDEEPRNNLCTSTTSPYRTCSCDKEHCS
EERRCCYDYLWDPEKPVSMSAYTERLLARPLHRQMACHRVLFDFSFVMVD
QCLLRDDHWLIGKCEGDKFEGVDDVIQTLPVMGINDLLYRNKHCALCNGI
LNFKEVDINVTCSDEFKDGSLQRYLEKKFSKCQINLQADEGRYDRTCKDT
ACSKAHINLCHYFMDNFTTMDTNPTKRQIFKNVFCRHCNFMDIRQLGRSW
SKTLTLNYFQNLVAGCPENMVFDMQLASCVPYKCGPGYTIIDHRCKKNKI
ISIGDSSSCPKTCTYRQYFVFKEQPTIAKDRQDLLNTFENYSLVFTNAST
SLYEMPFNETALSIVMSHNYSPTMTILATTSQFHVSKLHMLSVNQFTSKG
LCTGPMVLFARQQLTEKPNCICEELTLRR Run BLAST on NCBI transcript from alignment at scaffold_218:760547..761984 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052719 ID=TCONS_00052719|Name=TCONS_00052719|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at scaffold_218:760547..761984 (Clytia hemisphaerica)
TTCTCCTCAAGGTCAACTCTTCACATATGCAATTTGGTTTTTCTGTAAGC
TGTTGTCTTGCAAACAAAACCATGGGACCTGTACAAAGTCCTTTACTTGT
GAACTGATTGACACTAAGCATGTGAAGTTTAGAGACGTGAAATTGTGATG
TTGTGGCAAGAATTGTCATAGTAGGTGAATAATTGTGAGACATTACTATA
CTGAGTGCTGTTTCATTGAAAGGCATTTCATACAGGCTGGTCGAAGCATT
CGTAAACACTAAGGAGTAATTCTCGAAAGTATTCAAAAGGTCTTGCCTGT
CTTTAGCAATCGTAGGTTGTTCTTTGAAAACGAAATATTGTCGATAAGTA
CATGTTTTCGGACAACTACTACTGTCGCCAATAGAAatgattttattctt
tttgcAACGGTGATCAATGATAGTGTATCCCGGACCACATTTATACGGGA
CACAAGATGCAAGTTGCATGTCAAAAACCATATTTTCTGGACAACCTGCC
ActaagttttgaaaatagttAAGCGTCAACGTCTTTGACCAAGACCTTCC
CAATTGGCGTATGTCCATGAAGTTGCAATGTCTGCAAAACACATTTTTGA
ATATCTGTCTTTTCGTTGGATTAGTATCCATGGTGGTAAAATTATCCATG
AAATAATGACAAAGATTTATATGGGCTTTGCTGCACGCTGTGTCTTTACA
AGTCCTATCATATCGACCCTCGTCTGCTTGCAGATTTATTTGACATTTGG
AGAATTTCTTCTCAAGGTATCTTTGTAATGATCCATCTTTGAATTCATCA
GAACATGTTACATTTATGTCGACTTCTTTGAAATTCAGAATTCCATTGCA
AAGCGCGCAATGCTTGTTTCGATACAAGAGATCGTTAATTCCCATCACCG
GTAGTGTTtgtatgacgtcatcaactccCTCAAACTTATCCCCTTCGCAT
TTTCCAATCAACCAATGGTCGTCTCTTAATAAACACTGATCAACCATGAC
gaaagaaaagtcaaaaagaacTCTATGGCACGCCATTTGTCGATGTAGAG
GTCTTGCTAGTAGTCGTTCTGTGTATGCACTCATACTGACGGGCTTTTCT
GGATCCCATAGATAATCATAACAACACCTTCGCTCTTCAGAACAATGTTC
TTTATCACAACTACACGTTCTGTACGGGGAAGTAGTGGAGGTGCACAGGT
TATTACGCGGCTCCTCGTCACCGGTACGAAAATTAACGTTCTGGTGCTTG
AAAAAATCAATCAGCGGAAAAGAAATGTTATTCCTGTTGTCGCCATAAAT
GCCTATAAGAGATACTAGAAATATCATCGACTGGCCAATTAATGGTCTCC
AATACATCCTATAATTCACTGCGGAATTCTTGCTGCTTGATGCTCTCCCA
TCAGTATAAACACCCCTACTAGAGATTTTGATTAAccc Coding sequence (CDS) from alignment at scaffold_218:760547..761984 >TCONS_00052719 ID=TCONS_00052719|Name=TCONS_00052719|organism=Clytia hemisphaerica|type=CDS|length=1437bp|location=Sequence derived from alignment at scaffold_218:760547..761984 (Clytia hemisphaerica)
TCTCCTCAAGGTCAACTCTTCACATATGCAATTTGGTTTTTCTGTAAGCT
GTTGTCTTGCAAACAAAACCATGGGACCTGTACAAAGTCCTTTACTTGTG
AACTGATTGACACTAAGCATGTGAAGTTTAGAGACGTGAAATTGTGATGT
TGTGGCAAGAATTGTCATAGTAGGTGAATAATTGTGAGACATTACTATAC
TGAGTGCTGTTTCATTGAAAGGCATTTCATACAGGCTGGTCGAAGCATTC
GTAAACACTAAGGAGTAATTCTCGAAAGTATTCAAAAGGTCTTGCCTGTC
TTTAGCAATCGTAGGTTGTTCTTTGAAAACGAAATATTGTCGATAAGTAC
ATGTTTTCGGACAACTACTACTGTCGCCAATAGAAatgattttattcttt
ttgcAACGGTGATCAATGATAGTGTATCCCGGACCACATTTATACGGGAC
ACAAGATGCAAGTTGCATGTCAAAAACCATATTTTCTGGACAACCTGCCA
ctaagttttgaaaatagttAAGCGTCAACGTCTTTGACCAAGACCTTCCC
AATTGGCGTATGTCCATGAAGTTGCAATGTCTGCAAAACACATTTTTGAA
TATCTGTCTTTTCGTTGGATTAGTATCCATGGTGGTAAAATTATCCATGA
AATAATGACAAAGATTTATATGGGCTTTGCTGCACGCTGTGTCTTTACAA
GTCCTATCATATCGACCCTCGTCTGCTTGCAGATTTATTTGACATTTGGA
GAATTTCTTCTCAAGGTATCTTTGTAATGATCCATCTTTGAATTCATCAG
AACATGTTACATTTATGTCGACTTCTTTGAAATTCAGAATTCCATTGCAA
AGCGCGCAATGCTTGTTTCGATACAAGAGATCGTTAATTCCCATCACCGG
TAGTGTTtgtatgacgtcatcaactccCTCAAACTTATCCCCTTCGCATT
TTCCAATCAACCAATGGTCGTCTCTTAATAAACACTGATCAACCATGACg
aaagaaaagtcaaaaagaacTCTATGGCACGCCATTTGTCGATGTAGAGG
TCTTGCTAGTAGTCGTTCTGTGTATGCACTCATACTGACGGGCTTTTCTG
GATCCCATAGATAATCATAACAACACCTTCGCTCTTCAGAACAATGTTCT
TTATCACAACTACACGTTCTGTACGGGGAAGTAGTGGAGGTGCACAGGTT
ATTACGCGGCTCCTCGTCACCGGTACGAAAATTAACGTTCTGGTGCTTGA
AAAAATCAATCAGCGGAAAAGAAATGTTATTCCTGTTGTCGCCATAAATG
CCTATAAGAGATACTAGAAATATCATCGACTGGCCAATTAATGGTCTCCA
ATACATCCTATAATTCACTGCGGAATTCTTGCTGCTTGATGCTCTCCCAT
CAGTATAAACACCCCTACTAGAGATTTTGATTAAccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052719-exon-scaffold_218-1491911889:760547..761984 | TCONS_00052719-exon-scaffold_218-1491911889:760547..761984 | Clytia hemisphaerica | exon |
| TCONS_00052719-exon-scaffold_218-1510915933:760547..761984 | TCONS_00052719-exon-scaffold_218-1510915933:760547..761984 | Clytia hemisphaerica | exon |
| TCONS_00052719-exon-scaffold_218-1575043694:760547..761984 | TCONS_00052719-exon-scaffold_218-1575043694:760547..761984 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:760547..761984 . |
Blast
The following BLAST results are available for this feature:
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