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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052718 ID=TCONS_00052718|Name=TCONS_00052718|organism=Clytia hemisphaerica|type=transcript|length=674bp
ACACTGGAGTCTCTTAAACATTGCTTCATGGACAGCATACATAAGCTTCA
CCATCGCCAGAGCTTTTACCACCTTGACTATCGAACGATTGAATCAAAGA
GGGATCAGGCAAAGAGCAACACGTTCGTTTATGAAGTGCATATCTGTCAC
AACTCTCCTCGTCATCTTTGCTATAGTTCTCAATGAGACCAAAGTATATG
AGTTTTCTTATGGCGTCCAAACTTGTTGGATTGGTGATTCCTCGGCCCGC
ATTTTCGCTTATTACGTACCTGCAACCATCTCTTACTTCTCCTGCATTTT
CACCCTTGTCGTCATCGCGCGCATCATTCACAAAACTTACAAACGTACTA
GAGCGGCTTTCCGAAACATCAAGAATCAGGTTAAAGTTCGTAATATTTGC
ATCAGATTGGCTTTGATACTCGGAATCACCGAAGGAATCGGTTTGATACA
AAACCCCATAGACAAGCCGACAGACCAAAACACTTTGAAACTGTACACCG
CCTTCAGTTTTATTTATGACATTACAAGATCCACTCGAGGGTTGATGGTG
TCACTTATGGAAATTCGAAGACAGAAAATCGAGGTTACCCTGCGAAGCAG
CAACAACAACGGTTTCacaacgaaaaaaaaatagttttgtaGACATAAAA
ATGAAGCGAGTCCAAGGATTTGAA Run BLAST on NCBI protein sequence of TCONS_00052718-protein >TCONS_00052718-protein ID=TCONS_00052718-protein|Name=TCONS_00052718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
HWSLLNIASWTAYISFTIARAFTTLTIERLNQRGIRQRATRSFMKCISVT
TLLVIFAIVLNETKVYEFSYGVQTCWIGDSSARIFAYYVPATISYFSCIF
TLVVIARIIHKTYKRTRAAFRNIKNQVKVRNICIRLALILGITEGIGLIQ
NPIDKPTDQNTLKLYTAFSFIYDITRSTRGLMVSLMEIRRQKIEVTLRSS
NNNGFTTKKK Run BLAST on NCBI transcript from alignment at scaffold_218:759365..760038 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052718 ID=TCONS_00052718|Name=TCONS_00052718|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at scaffold_218:759365..760038 (Clytia hemisphaerica)
TTCAAATCCTTGGACTCGCTTCATTTTTATGTCtacaaaactattttttt
ttcgttgtGAAACCGTTGTTGTTGCTGCTTCGCAGGGTAACCTCGATTTT
CTGTCTTCGAATTTCCATAAGTGACACCATCAACCCTCGAGTGGATCTTG
TAATGTCATAAATAAAACTGAAGGCGGTGTACAGTTTCAAAGTGTTTTGG
TCTGTCGGCTTGTCTATGGGGTTTTGTATCAAACCGATTCCTTCGGTGAT
TCCGAGTATCAAAGCCAATCTGATGCAAATATTACGAACTTTAACCTGAT
TCTTGATGTTTCGGAAAGCCGCTCTAGTACGTTTGTAAGTTTTGTGAATG
ATGCGCGCGATGACGACAAGGGTGAAAATGCAGGAGAAGTAAGAGATGGT
TGCAGGTACGTAATAAGCGAAAATGCGGGCCGAGGAATCACCAATCCAAC
AAGTTTGGACGCCATAAGAAAACTCATATACTTTGGTCTCATTGAGAACT
ATAGCAAAGATGACGAGGAGAGTTGTGACAGATATGCACTTCATAAACGA
ACGTGTTGCTCTTTGCCTGATCCCTCTTTGATTCAATCGTTCGATAGTCA
AGGTGGTAAAAGCTCTGGCGATGGTGAAGCTTATGTATGCTGTCCATGAA
GCAATGTTTAAGAGACTCCAGTGT Coding sequence (CDS) from alignment at scaffold_218:759365..760038 >TCONS_00052718 ID=TCONS_00052718|Name=TCONS_00052718|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_218:759365..760038 (Clytia hemisphaerica)
ctatttttttttcgttgtGAAACCGTTGTTGTTGCTGCTTCGCAGGGTAA
CCTCGATTTTCTGTCTTCGAATTTCCATAAGTGACACCATCAACCCTCGA
GTGGATCTTGTAATGTCATAAATAAAACTGAAGGCGGTGTACAGTTTCAA
AGTGTTTTGGTCTGTCGGCTTGTCTATGGGGTTTTGTATCAAACCGATTC
CTTCGGTGATTCCGAGTATCAAAGCCAATCTGATGCAAATATTACGAACT
TTAACCTGATTCTTGATGTTTCGGAAAGCCGCTCTAGTACGTTTGTAAGT
TTTGTGAATGATGCGCGCGATGACGACAAGGGTGAAAATGCAGGAGAAGT
AAGAGATGGTTGCAGGTACGTAATAAGCGAAAATGCGGGCCGAGGAATCA
CCAATCCAACAAGTTTGGACGCCATAAGAAAACTCATATACTTTGGTCTC
ATTGAGAACTATAGCAAAGATGACGAGGAGAGTTGTGACAGATATGCACT
TCATAAACGAACGTGTTGCTCTTTGCCTGATCCCTCTTTGATTCAATCGT
TCGATAGTCAAGGTGGTAAAAGCTCTGGCGATGGTGAAGCTTATGTATGC
TGTCCATGAAGCAATGTTTAAGAGACTCCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052718-exon-scaffold_218-1491911889:759365..760038 | TCONS_00052718-exon-scaffold_218-1491911889:759365..760038 | Clytia hemisphaerica | exon |
| TCONS_00052718-exon-scaffold_218-1510915933:759365..760038 | TCONS_00052718-exon-scaffold_218-1510915933:759365..760038 | Clytia hemisphaerica | exon |
| TCONS_00052718-exon-scaffold_218-1575043694:759365..760038 | TCONS_00052718-exon-scaffold_218-1575043694:759365..760038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:759365..760038 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000832 | GPCR_2_secretin-like |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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