TCONS_00052717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052717
Unique NameTCONS_00052717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052717 ID=TCONS_00052717|Name=TCONS_00052717|organism=Clytia hemisphaerica|type=transcript|length=287bp
GGCTAACACAACTACTTTTTacagaaattaaaaaagacaaTAAATTACAT
GGTACAGTAAATTATAATTGCATGGAGACTTCAATCTAGCTGTGTACTTT
GAACTTTGCTATCTTTTTAGTTCTTTTTACAACAGGAAGCAATTTAGTGG
TTTTTTCTTAATGATTCTCTTAACAATTTCAGTCCAACGAATATTTCAAC
CAGCCAATAGATTCATCATTGTAGTAAAAGAGTTGAAAACACTGTCAGTT
TATCAGACAAATAAACATAAACAGTGATAAAAACAGA
Run BLAST on NCBI

transcript from alignment at scaffold_218:745559..745845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052717 ID=TCONS_00052717|Name=TCONS_00052717|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at scaffold_218:745559..745845 (Clytia hemisphaerica)
TCTGTTTTTATCACTGTTTATGTTTATTTGTCTGATAAACTGACAGTGTT
TTCAACTCTTTTACTACAATGATGAATCTATTGGCTGGTTGAAATATTCG
TTGGACTGAAATTGTTAAGAGAATCATTAAGAAAAAACCACTAAATTGCT
TCCTGTTGTAAAAAGAACTAAAAAGATAGCAAAGTTCAAAGTACACAGCT
AGATTGAAGTCTCCATGCAATTATAATTTACTGTACCATGTAATTTAttg
tcttttttaatttctgtAAAAAGTAGTTGTGTTAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033321XLOC_033321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052717-exon-scaffold_218-1491911889:745559..745845TCONS_00052717-exon-scaffold_218-1491911889:745559..745845Clytia hemisphaericaexon
TCONS_00052717-exon-scaffold_218-1510915933:745559..745845TCONS_00052717-exon-scaffold_218-1510915933:745559..745845Clytia hemisphaericaexon
TCONS_00052717-exon-scaffold_218-1575043694:745559..745845TCONS_00052717-exon-scaffold_218-1575043694:745559..745845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:745559..745845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35709	0	2.04876	0.501097	0	0	1.74476	1.08895	0.762397	0	0	1.80763	1.20341	2.18707	0	0.551316	0	0.696133	0	0	0.874742	1.28001	0.518671	0	0.971366	4.76807	0.620281	0.66198	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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