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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052650 ID=TCONS_00052650|Name=TCONS_00052650|organism=Clytia hemisphaerica|type=transcript|length=638bp
aaaaagccgaaaactgaaaaatcatgtaaaaaacaagttttattaTAACT
CCTGACAAAGAAAAAGACTTTTCAAAACCATGGTTGGTAGAGGAAAATGG
AAGGTTATTAATGGTAAATTGAGTAACACAGAATTGACCAATCAGAGCTC
ATCATCTACCACAACATCAAGGTTCTCCCAAGATAATGCTCTCAAATATG
GTAGCCTGGATCGCAGAATATTATCAAAACATAGACATTCACAGGCTAGT
TTAAGTCGAACGAACAGTTGTGAGAATGTGGATGATTTATCTGCTTCAAC
ACAATCCCTTAAACGGACATCCCCTGTTCAATTATCGTCGCTGAACAGGA
TTGGAAGTATGCGTGAGTCTAGGAGAAGTCATACAGACATCAATAATAAC
AATGATGAGGGGCCAGGCTCAAGACGGGGGTCAACCTCAGATGTTTCTTC
GGCTGTCAATAGAAATACAACGAACAAGGTTCTGGAGAAATGGAAGAATC
TTGAACGTTCAAAGACAGGCACCAGCAGCATGTCAACTTTATCAAAATCA
CAACCTAATACACCGAAACTTCCACGACGCTCGTTAGACCACTCCCGAAC
CTATTGTGAAAGTAGTGACACAGACACTGAAAAGGCAC Run BLAST on NCBI transcript from alignment at scaffold_218:862633..864430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052650 ID=TCONS_00052650|Name=TCONS_00052650|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at scaffold_218:862633..864430+ (Clytia hemisphaerica)
aaaaagccgaaaactgaaaaatcatgtaaaaaacaagttttattaTAACT
CCTGACAAAGAAAAAGACTTTTCAAAACCATGGTTGGTAGAGGAAAATGG
AAGGTTATTAATGGTAAATTGAGTAACACAGAATTGACCAATCAGAGCTC
ATCATCTACCACAACATCAAGGTTCTCCCAAGATAATGCTCTCAAATATG
GTAGCCTGGATCGCAGAATATTATCAAAACATAGACATTCACAGGCTAGT
TTAAGTCGAACGAACAGTTGTGAGAATGTGGATGATTTATCTGCTTCAAC
ACAATCCCTTAAACGGACATCCCCTGTTCAATTATCGTCGCTGAACAGGA
TTGGAAGTATGCGTGAGTCTAGGAGAAGTCATACAGACATCAATAATAAC
AATGATGAGGGGCCAGGCTCAAGACGGGGGTCAACCTCAGATGTTTCTTC
GGCTGTCAATAGAAATACAACGAACAAGgtaagaaaatttatttattttg
tttattgccAGACTCAAAACATTTAAATGTTAGTTGGAACCAAAATAAGC
AATCAAGGGAAAATAATTTGAGACAGAAACGTTTTATTTCAGCTTTTCTT
ATGTTCAAGACATTGGCTCTTCATTATCTTAGCCTTAAACTTTCATTTCC
TTCTACAAAGAGAGAGTGCTTTACCAATATCATTTTTACCAGTTATTTTT
AGTCTCTATTATAAGAGGTAAATTGGTTTTAATTACCCCTTCCACTCGTG
ATTATCAATGCTTAATTCGGTTTCGATTAACATTCGCACGcctctctttt
ctttttaatcAAACATCTGGCATTCTTGTTCAAGTTCTTATCTTCAGCAA
TTGTAAAAACAGCTAATGAGAACAAAGCTTTATAAGCTGCTTCACTCGAC
AATCATGAAATTCAATAAAGAATTCACCGTGACTTTTCGgagttttacaa
aaaaatggtagactttCATCGTGAATTCACCTACAAAGTCAGAGTAATCG
TTTTGCTACTTTCCTGTGACTTCAAGAATTGGAGAGTTTTTCGATAACCT
TTTAAACCACTTCACTAAGTAGATACCAAACCAAGGGGAAAGATAATCGG
CTTATGAGCATCCGAATCAAAAGTTTTTCACTGTTTTGACGTAATAAGCC
TCATTCTTACTTAGTTGAGCGAAAAATCTAGGTACTGACCATTAAAATCT
GATCAGGTTTGATCGGATATAAGGTAATTACAATCATGAATTGTCCAAGG
TAACAGCAATTACCTATTTCGACCAtcctatcaaaaaaaatttgatcggA
ATCTTGATATTCAATCAACAACATCATTTTAATGTAATTTCACTATCTCA
CTGTGTTAAAACCCTTTCTATAAGGATTCTAGATTTCTTCGATTTGATTG
CTTAAATTGAGAGCTTGactttttttgagagctttgaTGGCATTGACTTT
AATGAGAGCTTGACCTGGTTACCGGCtgtcttttataaaaaatgatggTG
AGTTTGAAAATACGATCTATAACATGGATGGATGAATACGCATTCCAAGT
ATTTTACACTGATTCTACATAAATCCTAATAGAAGGCCTTATTTTTTAAG
GTTCCctgttctaaaattatttttctctgtTCTTCTAGGTTCTGGAGAAA
TGGAAGAATCTTGAACGTTCAAAGACAGGCACCAGCAGCATGTCAACTTT
ATCAAAATCACAACCTAATACACCGAAACTTCCACGACGCTCGTTAGACC
ACTCCCGAACCTATTGTGAAAGTAGTGACACAGACACTGAAAAGGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052650-exon-scaffold_218-1491911889:862633..863110 | TCONS_00052650-exon-scaffold_218-1491911889:862633..863110 | Clytia hemisphaerica | exon |
| TCONS_00052650-exon-scaffold_218-1510915933:862633..863110 | TCONS_00052650-exon-scaffold_218-1510915933:862633..863110 | Clytia hemisphaerica | exon |
| TCONS_00052650-exon-scaffold_218-1575043694:862633..863110 | TCONS_00052650-exon-scaffold_218-1575043694:862633..863110 | Clytia hemisphaerica | exon |
| TCONS_00052650-exon-scaffold_218-1491911889:864271..864430 | TCONS_00052650-exon-scaffold_218-1491911889:864271..864430 | Clytia hemisphaerica | exon |
| TCONS_00052650-exon-scaffold_218-1510915933:864271..864430 | TCONS_00052650-exon-scaffold_218-1510915933:864271..864430 | Clytia hemisphaerica | exon |
| TCONS_00052650-exon-scaffold_218-1575043694:864271..864430 | TCONS_00052650-exon-scaffold_218-1575043694:864271..864430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:862633..864430 + |
Blast
The following BLAST results are available for this feature:
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