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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052648 ID=TCONS_00052648|Name=TCONS_00052648|organism=Clytia hemisphaerica|type=transcript|length=1503bp
agaaaaaagactaaaaagccgaaaactgaaaaatcatgtaaaaaacaagt
tttattaTAACTCCTGACAAAGAAAAAGACTTTTCAAAACCATGGTTGGT
AGAGGAAAATGGAAGGTTATTAATGGTAAATTGAGTAACACAGAATTGAC
CAATCAGAGCTCATCATCTACCACAACATCAAGGTTCTCCCAAGATAATG
CTCTCAAATATGGTAGCCTGGATCGCAGAATATTATCAAAACATAGACAT
TCACAGGCTAGTTTAAGTCGAACGAACAGTTGTGAGAATGTGGATGATTT
ATCTGCTTCAACACAATCCCTTAAACGGACATCCCCTGTTCAATTATCGT
CGCTGAACAGGATTGGAAGTATGCGTGAGTCTAGGAGAAGTCATACAGAC
ATCAATAATAACAATGATGAGGGGCCAGGCTCAAGACGGGGGTCAACCTC
AGATGTTTCTTCGGCTGTCAATAGAAATACAACGAACAAGGTTCTGGAGA
AATGGAAGAATCTTGAACGTTCAAAGACAGGCACCAGCAGCATGTCAACT
TTATCAAAATCACAACCTAATACACCGAAACTTCCACGACGCTCGTTAGA
CCACTCCCGAACCTATTGTGAAAGTAGTGACACAGACACTGAAAAGGCAC
CAGCGTTCACTCGTAACACGCGTCTACGGAAAAGTGAGTCTAGCATTAGG
ATACGGAGCACACGCACGCCATCGCCTAGAAGCTCCACGTCATCGGACAG
TAACGTGGAAAATGTAAACACTGAAAAGTTACCATCGATTGAACAAGTGA
CCAATCAAATTCAACGGTTATCAGACTCTGTGCATGAATCGAGAAGTCCA
AGACGTGATCGTcgacaaagaaaaattaataaggAAGAAAATGTTAATAA
AGATGGGAACAGTCCGAAAGAGGAACGAGTCCCTCTCAGGGAGAGACGTT
TAAGAGAGGAGACCAGTTCACAAAATGACACAACAAAAGAGAAAACGAGC
CCTAGTACTAGAGATACTGACAATTCAACCGTAAAAAGAAACCCCAAACA
AGATACAGACTTGGTTACAAATAAAAACACAACAAAGGATACTAGTTCGA
ATGTGAATGATAGTCCGAAAGGTGACCAGAAAAAGCGTGAAAGACGAAGC
CCGAATTCAACTCGTAGAAGTCGATCCCCAACAAATGCCATAATTGTACG
aagaaaatctattaaaaacaTAACTCTTTCTCAACCTTCGACCTCGGATA
GTACGAAGACCGTGGAGAGCTCTCAGAAATTATCGGATAATACACTTAAT
GAAACTAATACTTCTAAAACAGAGGACCATCAAACTAAACGTAGAAGTTT
GTCAGAAATGACTGGTTTGAAATTAAACACTACTTCTgcaccacaacaac
aacaacaaaattcaAGAACTTCTACTACTGAAAGTGTGATAGAGAAAACT
GACTCTAAAAGTGAAACAGACGATAAAGTTGAGACGCCCAAATTGACCCG
TCA Run BLAST on NCBI transcript from alignment at scaffold_218:862621..866005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052648 ID=TCONS_00052648|Name=TCONS_00052648|organism=Clytia hemisphaerica|type=transcript|length=3385bp|location=Sequence derived from alignment at scaffold_218:862621..866005+ (Clytia hemisphaerica)
agaaaaaagactaaaaagccgaaaactgaaaaatcatgtaaaaaacaagt
tttattaTAACTCCTGACAAAGAAAAAGACTTTTCAAAACCATGGTTGGT
AGAGGAAAATGGAAGGTTATTAATGGTAAATTGAGTAACACAGAATTGAC
CAATCAGAGCTCATCATCTACCACAACATCAAGGTTCTCCCAAGATAATG
CTCTCAAATATGGTAGCCTGGATCGCAGAATATTATCAAAACATAGACAT
TCACAGGCTAGTTTAAGTCGAACGAACAGTTGTGAGAATGTGGATGATTT
ATCTGCTTCAACACAATCCCTTAAACGGACATCCCCTGTTCAATTATCGT
CGCTGAACAGGATTGGAAGTATGCGTGAGTCTAGGAGAAGTCATACAGAC
ATCAATAATAACAATGATGAGGGGCCAGGCTCAAGACGGGGGTCAACCTC
AGATGTTTCTTCGGCTGTCAATAGAAATACAACGAACAAGgtaagaaaat
ttatttattttgtttattgccAGACTCAAAACATTTAAATGTTAGTTGGA
ACCAAAATAAGCAATCAAGGGAAAATAATTTGAGACAGAAACGTTTTATT
TCAGCTTTTCTTATGTTCAAGACATTGGCTCTTCATTATCTTAGCCTTAA
ACTTTCATTTCCTTCTACAAAGAGAGAGTGCTTTACCAATATCATTTTTA
CCAGTTATTTTTAGTCTCTATTATAAGAGGTAAATTGGTTTTAATTACCC
CTTCCACTCGTGATTATCAATGCTTAATTCGGTTTCGATTAACATTCGCA
CGcctctcttttctttttaatcAAACATCTGGCATTCTTGTTCAAGTTCT
TATCTTCAGCAATTGTAAAAACAGCTAATGAGAACAAAGCTTTATAAGCT
GCTTCACTCGACAATCATGAAATTCAATAAAGAATTCACCGTGACTTTTC
GgagttttacaaaaaaatggtagactttCATCGTGAATTCACCTACAAAG
TCAGAGTAATCGTTTTGCTACTTTCCTGTGACTTCAAGAATTGGAGAGTT
TTTCGATAACCTTTTAAACCACTTCACTAAGTAGATACCAAACCAAGGGG
AAAGATAATCGGCTTATGAGCATCCGAATCAAAAGTTTTTCACTGTTTTG
ACGTAATAAGCCTCATTCTTACTTAGTTGAGCGAAAAATCTAGGTACTGA
CCATTAAAATCTGATCAGGTTTGATCGGATATAAGGTAATTACAATCATG
AATTGTCCAAGGTAACAGCAATTACCTATTTCGACCAtcctatcaaaaaa
aatttgatcggAATCTTGATATTCAATCAACAACATCATTTTAATGTAAT
TTCACTATCTCACTGTGTTAAAACCCTTTCTATAAGGATTCTAGATTTCT
TCGATTTGATTGCTTAAATTGAGAGCTTGactttttttgagagctttgaT
GGCATTGACTTTAATGAGAGCTTGACCTGGTTACCGGCtgtcttttataa
aaaatgatggTGAGTTTGAAAATACGATCTATAACATGGATGGATGAATA
CGCATTCCAAGTATTTTACACTGATTCTACATAAATCCTAATAGAAGGCC
TTATTTTTTAAGGTTCCctgttctaaaattatttttctctgtTCTTCTAG
GTTCTGGAGAAATGGAAGAATCTTGAACGTTCAAAGACAGGCACCAGCAG
CATGTCAACTTTATCAAAATCACAACCTAATACACCGAAACTTCCACGAC
GCTCGTTAGACCACTCCCGAACCTATTGTGAAAGTAGTGACACAGACACT
GAAAAGGCACCAGCGTTCACTCGTAACACGCGTCTACGGAAAAGTGAGTC
TAGCATTAGGATACGGAGCACACGCACGCCATCGCCTAGAAGCTCCACGT
CATCGGACAGTAACGTGGAAAATGTAAACACTGAAAAGTTACCATCGATT
GAACAAGTGACCAATCAAATTCAACGGTTATCAGACTCTGTGCATGAATC
GAGAAGTCCAAGACGTGATCGTcgacaaagaaaaattaataaggAAGAAA
ATGTTAATAAAGATGGGAACAGTCCGAAAGAGGAACGAGTCCCTCTCAGG
GAGAGACGTTTAAGAGAGGAGACCAGTTCACAAAATGACACAACAAAAGA
GAAAACGAGCCCTAGTACTAGAGATACTGACAATTCAACCGTAAAAAGAA
ACCCCAAACAAGATACAGACTTGGNATGATGGTGAGTTTGAAAATACGAT
CTATAACATGGATGGATGAATACGCATTCCAAGTATTTTACACTGATTCT
ACATAAATCCTAATAGAAGGCCTTATTTTTTAAGGTTCCctgttctaaaa
ttatttttctctgtTCTTCTAGGTTCTGGAGAAATGGAAGAATCTTGAAC
GTTCAAAGACAGGCACCAGCAGCATGTCAACTTTATCAAAATCACAACCT
AATACACCGAAACTTCCACGACGCTCGTTAGACCACTCCCGAACCTATTG
TGAAAGTAGTGACACAGACACTGAAAAGGCACCAGCGTTCACTCGTAACA
CGCGTCTACGGAAAAGTGAGTCTAGCATTAGGATACGGAGCACACGCACG
CCATCGCCTAGAAGCTCCACGTCATCGGACAGTAACGTGGAAAATGTAAA
CACTGAAAAGTTACCATCGATTGAACAAGTGACCAATCAAATTCAACGGT
TATCAGACTCTGTGCATGAATCGAGAAGTCCAAGACGTGATCGTcgacaa
agaaaaattaataaggAAGAAAATGTTAATAAAGATGGGAACAGTCCGAA
AGAGGAACGAGTCCCTCTCAGGGAGAGACGTTTAAGAGAGGAGACCAGTT
CACAAAATGACACAACAAAAGAGAAAACGAGCCCTAGTACTAGAGATACT
GACAATTCAACCGTAAAAAGAAACCCCAAACAAGATACAGACTTGGTTAC
AAATAAAAACACAACAAAGGATACTAGTTCGAATGTGAATGATAGTCCGA
AAGGTGACCAGAAAAAGCGTGAAAGACGAAGCCCGAATTCAACTCGTAGA
AGTCGATCCCCAACAAATGCCATAATTGTACGaagaaaatctattaaaaa
caTAACTCTTTCTCAACCTTCGACCTCGGATAGTACGAAGACCGTGGAGA
GCTCTCAGAAATTATCGGATAATACACTTAATGAAACTAATACTTCTAAA
ACAGAGGACCATCAAACTAAACGTAGAAGTTTGTCAGAAATGACTGGTTT
GAAATTAAACACTACTTCTgcaccacaacaacaacaacaaaattcaAGAA
CTTCTACTACTGAAAGTGTGATAGAGAAAACTGACTCTAAAAGTGAAACA
GACGATAAAGTTGAGACGCCCAAATTGACCCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052648-exon-scaffold_218-1491911889:862621..863110 | TCONS_00052648-exon-scaffold_218-1491911889:862621..863110 | Clytia hemisphaerica | exon |
| TCONS_00052648-exon-scaffold_218-1510915933:862621..863110 | TCONS_00052648-exon-scaffold_218-1510915933:862621..863110 | Clytia hemisphaerica | exon |
| TCONS_00052648-exon-scaffold_218-1575043694:862621..863110 | TCONS_00052648-exon-scaffold_218-1575043694:862621..863110 | Clytia hemisphaerica | exon |
| TCONS_00052648-exon-scaffold_218-1491911889:864993..866005 | TCONS_00052648-exon-scaffold_218-1491911889:864993..866005 | Clytia hemisphaerica | exon |
| TCONS_00052648-exon-scaffold_218-1510915933:864993..866005 | TCONS_00052648-exon-scaffold_218-1510915933:864993..866005 | Clytia hemisphaerica | exon |
| TCONS_00052648-exon-scaffold_218-1575043694:864993..866005 | TCONS_00052648-exon-scaffold_218-1575043694:864993..866005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:862621..866005 + |
Blast
The following BLAST results are available for this feature:
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