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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052643 ID=TCONS_00052643|Name=TCONS_00052643|organism=Clytia hemisphaerica|type=transcript|length=1843bpRun BLAST on NCBI protein sequence of TCONS_00052643-protein >TCONS_00052643-protein ID=TCONS_00052643-protein|Name=TCONS_00052643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp MEDMIECLNTLKTAFSKKILNNDQFHSAFANALTAWCLILSVADDSIACERun BLAST on NCBI transcript from alignment at scaffold_218:759315..769349+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052643 ID=TCONS_00052643|Name=TCONS_00052643|organism=Clytia hemisphaerica|type=transcript|length=10035bp|location=Sequence derived from alignment at scaffold_218:759315..769349+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:759315..769349+ >TCONS_00052643 ID=TCONS_00052643|Name=TCONS_00052643|organism=Clytia hemisphaerica|type=CDS|length=4935bp|location=Sequence derived from alignment at scaffold_218:759315..769349+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052643 vs. Swiss-Prot (Human)
Match: IFRD1 (Interferon-related developmental regulator 1 OS=Homo sapiens GN=IFRD1 PE=1 SV=4) HSP 1 Score: 145.591 bits (366), Expect = 1.026e-37 Identity = 86/256 (33.59%), Postives = 138/256 (53.91%), Query Frame = 1
Query: 43 TALGTSCIIADVEMEDMIECLNTLKTAFSKKILN-----------NDQFHSAFANALTAWCLILSVADDSIACEQIQNCMGVLCKLLELGSLNLRIAAGEAAALVYELAYNNRMSL-QGPVNTLHNLLQEFANESGRHKGKREKKQQKSSFRDILKSVKSNIPPEQTIKFGPEFIEIGSWSWLLRYRAFKDALGPGTNIHLQTNPFVRETFDLGLPL---PKELKESKVSKYEKQLVNSASSKVRTQKRNQRRDHK 765
T G C IA ++ ++ L L+ F+K L N H ++L AW L+L++ + ++++ L LL +N+RIAAGE+ AL++ELA + +L +L+ A + +H+ K +K++Q+S FRD+L++V+ P +TIKFGPE + I W Y FK+ LG G HLQ+N F+R F+LG P+ LK K+S++E+ L NSA+ K RT+ R++ RD +
Sbjct: 192 TCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLH---ISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKCRDKR 444 The following BLAST results are available for this feature:
BLAST of TCONS_00052643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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