TCONS_00052641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052641
Unique NameTCONS_00052641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052641 ID=TCONS_00052641|Name=TCONS_00052641|organism=Clytia hemisphaerica|type=transcript|length=592bp
AACATCTGATTCTGCATTTCATATAGAATCTAACTCGGACTTCCCAGTCT
GGAATAAAGAAGGATGGTAGTGGTCAACCTACATATGACATTAGGAgcaa
ttgaaaataataatggCCGACTTACCTGATAGAAGAAGGAAGAAAGACAG
AAAACATCACCGCAAAGGTGCATCAAACCATGCAAGCAGCAATGGCATGG
ATGAAGAATTTGATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCT
GATTCTGTTGACAGTCAGTTTGCCTTGGAGGACATTGATGaagGTGTCGA
TTATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATGTA
GACAAAAAGGtTCAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAG
GCTTTACGCAGGAGATACGCTGGCGAATTTTTAACAGACAGGGTAGAAAC
TATGATTGACATTTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGA
TAAAATATTATGGAGTTTCTACTATATGCCATATATAGTTTCATATAATA
TACCTTTAATAAGTTCAATAAAGAGTTattttcagcgatttt
Run BLAST on NCBI

protein sequence of TCONS_00052641-protein

>TCONS_00052641-protein ID=TCONS_00052641-protein|Name=TCONS_00052641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MADLPDRRRKKDRKHHRKGASNHASSNGMDEEFDSNDDNYSVVSEADSVD
SQFALEDIDEGVDYMEDFEGKLKENIEGCRQKGSNGRQASLLEVQKALRR
RYAGEFLTDRVETMIDILEKLMKRGXLEWIKYYGVSTICHI
Run BLAST on NCBI

transcript from alignment at scaffold_218:753181..757428+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052641 ID=TCONS_00052641|Name=TCONS_00052641|organism=Clytia hemisphaerica|type=transcript|length=4248bp|location=Sequence derived from alignment at scaffold_218:753181..757428+ (Clytia hemisphaerica)
AACATCTGATTCTGCATTTCATATAGAATCTAACTCGGACTTCCCAGTCT
GGAATAAAGAAGGATGGTAGTGGTCAACCTACATATGACATTAGGGTACA
TAATGGTAGCTAGTCATTGCTCCTGGCCTTTATTAAACTTGCCAATAGTT
GCTCNATTAGGGTACATAATGGTAGCTGGTCATTGCTCCTGGCCTTTATT
AAACTTGCCAATAGTTGCTCCCAAAATCTTTTCTGCCTCATAAGTTTGCG
TGTAAGAACAGCAACTATTTTACTTGAAACTTACAACATTCTCCTTTTTT
TTCTAACATAAAACAAACACAGAAATAAGGCCTGCTTTCTCACTTATTAA
ACATACACAACAAATTTATTTTAGAgcaattgaaaataataatggCCGAC
TTACCTGATAGAAGAAGGAAGAAAGACAGAAAACATCACCGCAAAGGTAG
ACTTTATTCACCCAAAAGTCAACTGGATAGCAACTGCATCAAAACTTATT
TCCAGCTTTTTTTTCTCCATAATACAGCCTTTCTGTCAATGAAAAGAAAT
GTGGTGATATGTGATGGTTTTTTTTTCACTACAAAAAATTCACTTGTGAT
ATTCTTTCTTTAATGCAGAATTATTCTTATGTTTAATAACATGACACCTT
atattactttttgttttttcccttTAGGTGCATCAAACCATGCAAGCAGC
AATGGCATGGATGAAGAATTTGATTCAAATGATGACAACTATAGTGTGGT
CAGTGAGGCTGATTCTGTTGACAGTCAGTTTGCCTTGGAGGACATTGATG
GTATGAAAACAAAATAGTTCTGATggcaattaacaaaattgaaaagAGCC
TAAGGCGCTttcaaattagaaatttctttttgagGATATAATATTCAgac
catttttttgttttttagaagGTGTCGATTATATGGAAGACTTTGAAGGA
AAGCTAAAAGAGAACATTGAAGGATGTAGACAAAAAGGGTAATTAATCAT
TTGAGACCCTCTCtaaaccaggggggggggtcagtgtaccagaaggtggc
atgtatcctggggtgggtgggtgtttgagaaaaaaatttgtcatgtacta
cctgtgtactataattggggtgttgggtccaaaatcgaatttgattttac
tacctgtgtaccaaaataggggtgttgggtccaaaatcgatgttaaaagt
gtggaaacaaaaaggttaagaaattagaaaatagaaaatgtaaagttgtt
ctattataaattgatcaagccaagtttgtccaagatcattcttccaaact
tcttggaatgGATTGAAATCCTACTAGATCCCACTGAAATGAAGGTTTAT
cgagtcaatgtaaacattccaacatttgaattcaaacattcaacattggt
gccaactctcacgcattgggtgtgagactcgtgcatttccacatggtctc
gcatagtttttgaaaagtttgatttcttacgcattttggatttttgagaa
aaattttcctgtttttccgatttttggaaaaaagttttcccaatttccca
atttcctgattttccgaaaaaaagttttcccgatttcctgatttttggaa
aaatgtttacccgattttccgatttttggaaaaaagtttctttttttttc
ggatttttcTAGGTAGTGCCCGGTAGTAAatggggggtatggggtggttt
tgttttttttcaaggtactacccggtagtaaatagggggtatggggtggt
tttagGATTTTTCCATGTAGTNcccccccccccccccgtctaaACATTGT
CTTCCTATCTTGCCTTGTTGATATATATATGTGACTCCCCCATCCGATAT
TTTGAATACCTAAAAATTGATTAGTCTTGGTACGGTAATTGGGAGAAGTC
TAATATTGATCAAGATTTTGTTTTGGATCAGCTTCAGTCattgtaaaaaa
tttgattgCAGCGGGTCCTTGTGGCTTGCAGACGTTAATGACCCATCTTT
TGACCTTCTGACTGCTCCTTAGTGTTTGTTAGTGATGCtcacatcaaaaa
attcttttaaaaagatgTCAGCCAGTAAATCTGGGATCTGGGCCTGGGAT
GCAAAAGACACATTGAAATGGCCTCTAGATTAACTGCACTCGTAGTATCC
TTTTGGTAAATTGTTATTGAAAAAGACCATCAAAGACTGGTCCGATTTTT
AAGTACTTAGTAATAAGATTGCTTGGGGAGTCATTTATTTGTACTTTGTC
ATCAAGAAATCATTGAGACAGGTCCCATGAGGAACTTTGATATTAAAACA
agtcaattctttttttaaacgaAATTGTTAAAATGATATAGAATGTTTAT
AATTCATAGTAACTTCAAACTCttgcatttaaaaaaaggtttcgctcaga
aaaacacaattcttGAGTGAAGAAACTATTTCGGGCTTGTTTAGACTTCA
TGGTTATTTTAGAGCCATTTTTTAGAAGGCGCGCAATTTAACAGACTCAG
ATCTGacgaggctcaaaatttaagatttttttaagccaTACTCCTTATAA
GAAAATGCAGACTCTCATAAATTTTGACCTCCCTCTCAGATCAGCCActg
attttcataattttttataaaccTTTACAatgtttcttctttctttttag
tTCAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAGGCTTTACGCA
GGAGATACGCTGGCGAATTTTTAACAGACAGGTTCTCTCCAAGTCTCAAA
ttcttcttttcattgttttctaccatctgtttgaaaatattttatatttt
tccagatttttcaaCCTGTAGACAGAAGTCTATCATATCAAGTAAAGATA
TTTTTCCAGAATTTCAATATTTGCAAGAAGAAGCTTTGCAATAAATGATG
TTTGATTTATGGAAGTTTTGGCTGGTTTTGGTCAAATTCAACAAAAGTGT
TGACagtattagaaaaaaaatttagatagCCAAATGGACATGTTCATTAA
aaacgtcaaattttcaaggtttttgtgacatttttaaaTCATGTTACAAA
ATTATCTATAACTTTTTAATACTATATGATATAGAAAACCAACCTAAATG
ATGGTTAAGTAGGTGGATAGTCTTGTGACAGTTTTTCTATACTCTTTACC
TAAGTCAGGTAACGATTGAAAGAAGCTTGCCAAGCTTTGGATAATGATGT
AACatctgattttttcaaatttttggataaTGGTACCCAGAACTTAATAT
TCCTTTGACATGGGGTACTGGAACCTTTTGCAATCAATTAAGGGGTTTTC
GCCCATATAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAATGTCATACATGTTGTTAAAATA
AGGAtaccaatttttcatcattaaaaCAAGTGTATGGTTTCTAATGTTTA
TTTCAAGTATACTTCATTGTCTTGGATAACATTGTAACATCAAAACAAGG
TCATTTTCAAGATTCTTCCAAAGGGCCTATTAATTGATGGCGAACATCAA
AATCTACNCTTCAGTATAGAATAGGTTGggttttgaaaaagtcaaaattt
ttattgccTGCTTGCTGTGGATAAAAAAGTTACATTATTATCCAGATCTT
CTTATACNTTAAACCTGATACCTTGTCTCAGGACAGGTGATGAGTTATAA
GTTTTAATACAAACTATAGACAAGACCTTGGAATTGATATAATTGACAAT
GGATAATTTANAGACATTGTTACGGAATTATCCACAAAATTTCATTACTT
AGATCCCACAAAATCATGACTTATTaacaaaaaagtgatttttaccattt
tttaggGTGTCACAAAACTTGACGTTTTTAATGAACATGTCCAAATAAGT
AAAAGTGACATTCATTATcataaacttttattttatcttaaatGCAGGGT
AGAAACTATGATTGACATTTTGGAGAAACTGATGAAGCGTGGTNCCTTAG
AGTGGATAAAATATTATGGAGTTTCTACTATATGCCATATATAGTTTCAT
ATAATATACCTTTAATAAGTTCAATAAAGAGTTattttcagcgatttt

Coding sequence (CDS) from alignment at scaffold_218:753181..757428+

>TCONS_00052641 ID=TCONS_00052641|Name=TCONS_00052641|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_218:753181..757428+ (Clytia hemisphaerica)
atggCCGACTTACCTGATAGAAGAAGGAAGAAAGACAGAAAACATCACCG
CAAAGGTGCATCAAACCATGCAAGCAGCAATGGCATGGATGAAGAATTTG
ATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCTGATTCTGTTGAC
AGTCAGTTTGCCTTGGAGGACATTGATGaagGTGTCGATTATATGGAAGA
CTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATGTAGACAAAAAGGtT
CAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAGGCTTTACGCAGG
AGATACGCTGGCGAATTTTTAACAGACAGGGTAGAAACTATGATTGACAT
TTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGATAAAATATTATG
GAGTTTCTACTATATGCCATATATAGatggCCGACTTACCTGATAGAAGA
AGGAAGAAAGACAGAAAACATCACCGCAAAGGTGCATCAAACCATGCAAG
CAGCAATGGCATGGATGAAGAATTTGATTCAAATGATGACAACTATAGTG
TGGTCAGTGAGGCTGATTCTGTTGACAGTCAGTTTGCCTTGGAGGACATT
GATGaagGTGTCGATTATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAA
CATTGAAGGATGTAGACAAAAAGGtTCAAATGGTAGACAAGCTTCCCTCC
TAGAAGTACAAAAGGCTTTACGCAGGAGATACGCTGGCGAATTTTTAACA
GACAGGGTAGAAACTATGATTGACATTTTGGAGAAACTGATGAAGCGTGG
TNCCTTAGAGTGGATAAAATATTATGGAGTTTCTACTATATGCCATATAT
AGatggCCGACTTACCTGATAGAAGAAGGAAGAAAGACAGAAAACATCAC
CGCAAAGGTGCATCAAACCATGCAAGCAGCAATGGCATGGATGAAGAATT
TGATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCTGATTCTGTTG
ACAGTCAGTTTGCCTTGGAGGACATTGATGaagGTGTCGATTATATGGAA
GACTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATGTAGACAAAAAGG
tTCAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAGGCTTTACGCA
GGAGATACGCTGGCGAATTTTTAACAGACAGGGTAGAAACTATGATTGAC
ATTTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGATAAAATATTA
TGGAGTTTCTACTATATGCCATATATAGatggCCGACTTACCTGATAGAA
GAAGGAAGAAAGACAGAAAACATCACCGCAAAGGTGCATCAAACCATGCA
AGCAGCAATGGCATGGATGAAGAATTTGATTCAAATGATGACAACTATAG
TGTGGTCAGTGAGGCTGATTCTGTTGACAGTCAGTTTGCCTTGGAGGACA
TTGATGaagGTGTCGATTATATGGAAGACTTTGAAGGAAAGCTAAAAGAG
AACATTGAAGGATGTAGACAAAAAGGtTCAAATGGTAGACAAGCTTCCCT
CCTAGAAGTACAAAAGGCTTTACGCAGGAGATACGCTGGCGAATTTTTAA
CAGACAGGGTAGAAACTATGATTGACATTTTGGAGAAACTGATGAAGCGT
GGTNCCTTAGAGTGGATAAAATATTATGGAGTTTCTACTATATGCCATAT
ATAGatggCCGACTTACCTGATAGAAGAAGGAAGAAAGACAGAAAACATC
ACCGCAAAGGTGCATCAAACCATGCAAGCAGCAATGGCATGGATGAAGAA
TTTGATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCTGATTCTGT
TGACAGTCAGTTTGCCTTGGAGGACATTGATGaagGTGTCGATTATATGG
AAGACTTTGAAGGAAAGCTAAAAGAGAACATTGAAGGATGTAGACAAAAA
GGtTCAAATGGTAGACAAGCTTCCCTCCTAGAAGTACAAAAGGCTTTACG
CAGGAGATACGCTGGCGAATTTTTAACAGACAGGGTAGAAACTATGATTG
ACATTTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGATAAAATAT
TATGGAGTTTCTACTATATGCCATATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033265XLOC_033265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052641-exon-scaffold_218-1491911889:753181..753275TCONS_00052641-exon-scaffold_218-1491911889:753181..753275Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:753181..753275TCONS_00052641-exon-scaffold_218-1510915933:753181..753275Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:753181..753275TCONS_00052641-exon-scaffold_218-1575043694:753181..753275Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1491911889:753555..753626TCONS_00052641-exon-scaffold_218-1491911889:753555..753626Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:753555..753626TCONS_00052641-exon-scaffold_218-1510915933:753555..753626Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:753555..753626TCONS_00052641-exon-scaffold_218-1575043694:753555..753626Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1491911889:753858..753980TCONS_00052641-exon-scaffold_218-1491911889:753858..753980Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:753858..753980TCONS_00052641-exon-scaffold_218-1510915933:753858..753980Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:753858..753980TCONS_00052641-exon-scaffold_218-1575043694:753858..753980Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1491911889:754099..754168TCONS_00052641-exon-scaffold_218-1491911889:754099..754168Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:754099..754168TCONS_00052641-exon-scaffold_218-1510915933:754099..754168Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:754099..754168TCONS_00052641-exon-scaffold_218-1575043694:754099..754168Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1491911889:755831..755911TCONS_00052641-exon-scaffold_218-1491911889:755831..755911Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:755831..755911TCONS_00052641-exon-scaffold_218-1510915933:755831..755911Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:755831..755911TCONS_00052641-exon-scaffold_218-1575043694:755831..755911Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1491911889:757278..757428TCONS_00052641-exon-scaffold_218-1491911889:757278..757428Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1510915933:757278..757428TCONS_00052641-exon-scaffold_218-1510915933:757278..757428Clytia hemisphaericaexon
TCONS_00052641-exon-scaffold_218-1575043694:757278..757428TCONS_00052641-exon-scaffold_218-1575043694:757278..757428Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052641-proteinTCONS_00052641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:753181..757428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.62613	6.40071	1.57323	1.70869	52.9012	43.6265	39.6223	41.2555	22.9079	24.3253	22.2628	15.3867	15.3137	15.8382	11.8079	16.5967	25.3198	20.7366	12.0266	18.8667	19.9773	18.4506	17.0439	18.8803	41.7893	37.6835	20.2637	14.4013	22.4737	23.4067
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007701Interferon-rel_develop_reg_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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