TCONS_00052636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052636
Unique NameTCONS_00052636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052636 ID=TCONS_00052636|Name=TCONS_00052636|organism=Clytia hemisphaerica|type=transcript|length=1308bp
CAGAAAGTAAAGACAATTGACTaagatagaaaataaaaatgacaaaaggt
gGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGATATCACGTG
TTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCATAGAATGTG
GACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAGGGCATTAAT
GGCAATTATATCTGTCCACAAGATCGAATTGAAACGCCCcTTTATCCTGA
TAAAGGAAAAGGTCGAGAGATTTCGAACTTAATTGTTAAATGTTCTAGAA
ACAAACTGGGTTGTGCTTGGATCAAAGAACTGCGTGAATTAGACAATCAT
TTGGCTCAATGTGAATTTGAACTAGTGCAATGTGTTATCGAAGCCTGCTC
CATGACTTTTCAACGACAGTTTGAAAATGAACACTATTCTAAAGAGTGTT
ATTACAGGCTGAAAATGTGTTCGTTTTGTTCGGAAGAATATATACTGGCG
TATGAAGAGGAACACATCGAAGATTGTGAACAATTTCCACTTTGCTGTGA
TTTTTGTAACGCCGTAGAAATCGCCAAATCTGAGATGGAAACGCACTTAT
TACAAGATTGTAAAAAACTACGTCATTCATGTCCATTCGCTAATCTTGGT
TGTGAGAAAAAGATGTTTTTAGAAGACCTAAAAGTACACGAGGCAAACTC
ACATGACTACCATTTGCAACTAGCATCTAATAAGATTGCTCTACAAGATC
AAGTCATCAGCGAACAAACACAAAATGTAGAAATGCTATTGCGAAAAATC
GAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGATGTTCATGTTTGGAG
CATTCCATCTTTCACTAGAGAAATCGAAAAGGCTGAAGAAAATTTGTATC
TTTCCAAATTGATTTATACAGCCGATGGGTATAAGATGGAATTCCTCCTA
TACCCTAACGGTGATCTCGATAGAGCTGTCAGCTGCTTTTGTAAAAGCGT
TGAGGGTTCTTTCGCTGATTTATTGAAATGGccgatgaaaaaagtgattC
GAGTTTCGATCCTTGATAAGAATGACAATTTGAAAAGTGTATGTAAACTC
AAAACTGAAAATCATAATTCGTTCAAGGAGCCAGTTCACAAACACAAACC
TAGAGGCTGGAAAAGATTTATTCCACACGATCAATTACCCATACTCCTTC
ATAACGACACCTTAACTTTGAAGATAAACATTAGCGACGCagtttaattt
atttttctgttacTTCTTTTTAGTTGATTTGTTTTCCAATATTCAACGCA
TATAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_218:726793..739132+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052636 ID=TCONS_00052636|Name=TCONS_00052636|organism=Clytia hemisphaerica|type=transcript|length=12340bp|location=Sequence derived from alignment at scaffold_218:726793..739132+ (Clytia hemisphaerica)
CAGAAAGTAAAGACAATTGACTaagatagaaaataaaaatgacaaaaggt
gGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGATATCACGTG
TTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCATAGAATGTG
GACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAGGGGTAATGA
TGACAGCGTAGAATACTAGACTGATATTATTATCGTAATTGCAAAGACTT
TGAAATATTACATCACTAAAAGAGTTGGTGATCGGATTTTGGTATTCCCT
ACGCCATGATGAATCTTATGTATTATTATTGCAAAATATCATTAGGGAAG
ATATTTGATTTGGGGTCATTTTGTGTgatcattttgttgtttttttattt
agtgTTAATGGTAGTTATGTTTGCCCAGAAGATCGTGCTGAAACGGCTGT
AAGTTCACAAAGACATATTTTTAACTTAACCTTTAATCCTATCTTATTAC
CATGGTgtctgtgaattttttttataagaatactttggctgagggtgagc
attattcttatttttctattactCAAAACAATACAGTAGGCCTATTGTTC
TAATTgaaccctgatattcttattcttataaaacagAAGTGTGTATGAGA
AATCTTGAAAGCAGACCGACCAGTTAATTTAccaattttttcataaattt
aaaTACTACAAACACTTTTCGCAAACCTTTTTCAGTTTTATCCAGATAAA
GGAAGAGGTCGTGAAATTTTGGGTTTTGCAGTCAGATGCTCAAACAAAAT
GCTTGGTTGTCCATGGGTGAAAGAATTGCGTGAAGTAGAGGTAGTAAAAG
AATTGCGTGAAGTAGAGGTAGTAAAAGTTACTTTTTTTGGTCTCTAATTC
CTTCCATTGagctttttttatcaaaaatatagtttttgctttttggaaat
ttttaggATCACAAAGAACAATGCGACTTCAAAATCGTTAAATGTGTCGT
TGAATCGTGTGCTGAGGAGTTTCAAAGGCGATACGAAGATCAGCACtaca
aaaagtgcaaatacagaATGGTTCAATGCCCATTTTGCAACGAAgattat
atttttgcttttgagGAGGTATACTCTTGTTGATTTACCTCAGTTAGGTT
GACATGTTTTTGACTACAGTATATCTATTATGtttaatgaatgaatgaat
gaatgaatgaatgaatgaatgaatgaatgaatggatgaatgaatgaatga
atgaatgaatgaatgaatgaatgaatgaatgaagaaTGAATGAACTTTTA
GGAACACATTGACGATTGTGAAGAATTTTTGGAATGTTGTGATTATTGTT
CCGATATTGATATCCCAAGATCGAAGGTAATATAATTATTCTGACAAATT
CATTGGAATTAAGCTTCACTTGTTACTTTGGGGCTGTGGAAATCTAAAAT
CGTGaattaaatacaaaatagtaaaaattaAAACACTTTATCATTATGTT
taaagtttatatcaactttAGATGGACATTCACTTGTCAAAAGATTGCAA
GAAGATCCCGCTTTGTTGTCCATATGAGCCTCTTGGCTGCAAAGAAAAGG
TGAGATTAAACTTCAGGCTACTGTTGTAACTCAATGTCTTGCTTTCTGTG
GACTTCATTCCAACTTTATTATTCAAATTCTGCATTTTTCTTCTAGATGC
TTTTTAGTGATCTTGAAAAACACGAGGTAATATCTACTCAACACCACTTG
AAACTAGCCATAAACAAAATTACGAACCAACAAGAACAAATTCAATTGCT
GATGGATAACCAAAATCAATTGTTGGAAAGATTGAGTAAAGTGGAAGGCA
AGTCGGATGCGATTCTTCTAATGAAAGATCAGCATATTTGGAGGATACCA
CGATTTTCTGACGAAATACGAAAAGCCAAAAACCTAGGAAGACATCACac
actttcaaaattcatttaCACGTCAAAAGGTTACAGATTGGAATGTATTT
TACAACCTTATCAGCGATTATTTCAATCTGGTACCCTGCTTTCTTGCAGA
ACCACTGTAGGAAGTTTTGACGAGTCTTTAACATGGCCTATGAACAAATT
CATGATCACAAGTTGCATCATTGATCCACAAGGAATAGCGAGAGACAAAA
CCAGTGTTACTACTACAAACAGTCGTGCTTTCAAAAAACCACCACACTTG
AATCCTGGTGCAACATCATTTTTCATACCagatgaaaatgttgaaaaata
caCTTTTATTGGCATTCTTACAATCAAGATTCAGATCGCAGACGTGTAGA
CTTACAAATATTTTATTGTGAATCAACCACACTGAAAAACCATGAATATC
TATTTTTTTCGATTTGGAGAAGTTTCTTTCATATTCATCATAACGTGTCT
TTTACTCTTCGTTTGCTTAATGAAATGTGTCCTGTATAAAGCTGAAAAAA
CTCCTAAAAACTCATAGTAACTGGAATTTAGAATAATTTAAATAAGTTAC
AACAAAACAATTAAGTAATCAAGTCATAAAAATTGTTATACCTAGATTAC
AACTGGTTTTACAACTTCTGTTCCTCATTTTTGAGACACACTGTATATTG
TACTTGCTTTGCATCCACCATCAAGGGAGTGCATTATCTTAAAAGGGATA
TGGGATTAAACAAAAACAGTCCAAATTTATTTATTGTCTTTTTGGGACaa
cttttaagaattttaaacttttaaattttttgttccttttttcaccaCAC
ACGCTCgacccaacttttttttttgtttaggctaaaaaataaaaattcga
aaattaaaaacaaatagaaaataaaaatgccAAAAGGTGGTTATGATGTT
GAATTGGTGAATGGTGAACTGGAGAATGATATCACGTGTTCAATCTGTTT
GTTCATTTTGAAAGATCCTATGCAAGCCATAGAATGTGGACATCGATTTT
GTAAAACTTGTGTTGCTGGTCTTCAAAAGGGGTAATATTCACagtataaa
cttttaatttggtaccttattggtattaaatttcgcgggttaCAAAGTTT
CACGatttgcgaaattttttcgaggaAACGTGTCTCgtgtgtattaaatt
tcgcgattcactaaattggGCATTTTCAAAAGGTGGGAATAAAGTAAGAA
AAtaactgattttgcttgaaacacaacatATTGGGTAtaaacataccaaa
aatagtaattaagtgtaacaaataagtattttcgatttttggcgtatttt
gaaaatttttcgcgtgtatttaatttcgcgattttgtatttttgaaaaat
ttaaattttaaaattaaaaatttaatttcgcggaatttgacctataaatc
gcgaaattaagtacccgcgaaattttgtaacccgcgaaatttaataccaa
taaggtagtcGATATTTTACATACAATTTCTTTAGCAGGTCCTGCAAAAC
TGATCTTAACATCGTTTTGATAAAAGGTTTATGTGTTAAAAAGGTGAAAA
AGAGGTTTCCGATGGCTAGGTTTGTATCATTATCTCGCTATTAAacactt
tcaatatttttcagagAATTTGATTGGTCTTACTTTTCAATTAACAGCAT
TAATGGCAATTATATCTGTCCACAAGATCGAATTGAAACGCCCGTAAGAA
cgaatacatttttttttaagaaagactactttctttttaattgggATATT
ATTACCAAAGCTCTTATTTTCTAACTAGATTCTATCCCAAGCTAAATTCT
ATTCTATGCTTTTTCCCAAAGTGTGACATTTTTCTATATGCTGtgctatt
tctttttttcatttttctcttttcagcTTTATCCTGATAAAGGAAAAGGT
CGAGAGATTTCGAACTTAATTGTTAAATGTTCTAGAAACAAACTGGGTTG
TGCTTGGATCAAAGAACTGCGTGAATTAGACGTAAGTGTGCGTTTAAGCA
TTTCTAAATTCTCTCTATCAGACTTTAGTAGCTTGGACtgtatactttag
gcgtacaaacttttgcgagcagaaactttcgcgaggtcgaaaaattgCGA
AATTGACGACATTTAGTTACTTTCacgaatttgagaaaaaaaaaactttc
gcgagcataaactttcgcgtaTCGTtagataaaaatgagaattttcgaat
gaaaattgccttaaaagtgaaaaatattccttaaatccgATAAAAACGGT
TGCTCCtcgactttaaaaaggcattaaaggataaaaatattccaaaaaga
atttccaaagACATACGCCTAAACAGGCCTAAAGtattattattttgttt
atttcaaatttattttttcagaacCTTCTTATCAAGTCATTTTTTCTCCA
CTAGAATCATTTGGCTCAATGTGAATTTGAACTAGTGCAATGTGTTATCG
AAGCCTGCTCCATGACTTTTCAACGACAGTTTGAAAATGAACACTATTCT
AAAGAGTGTTATTACAGGCTGAAAATGTGTTCGTTTTGTTCGGAAGAATA
TATACTGGCGTATGAAGAGGTATCCAATTTCTATTAGTCAATCTAAAATT
GATTTAATGATCCTATTTGCGATGATATGATAATATTAaatcaaggattt
attatacactggatatacaagtaacagatttttgccgatttctcgtgtac
tagctatgtccgcagtaatgatgtcattgttcactctccttccctcatta
aatgattttcgaagcatttttattgcatttcttatcgaaaatcactcatc
caattctcaaaagagacttaaaactttcctgtgagagtcagattcttcca
cctaattgctaattataagtcgttatgacgtttcaagctgtgagaaagat
gcaaaagaggtgttgtgtataagaaatttaatgttgacaccggaaatttt
cagacttcaacctaaaaaaaaaccaccttgccaccacgtgcctccagaGG
ATTTTCATatcacagtggagccaagacactcaagtcttatgtatgttaat
ttcagctcttctggggacagtcttggaaagatatttccaattgaaaattt
cgtgtcactataagcattttgtcagaatttcttgtctaataatgtttttc
tcacattagatttcacaaatgtatccagctcggaatgctagccttacttt
caaacatttttttctgcaaatgtacaaaaagagagagctagaaaactttt
taaaaataagactgataaacatttttttaaatcagacaacttcgagccgc
catgacagttgtcctttgcggacaaagctagaacataaattgttttctga
aacaatgaaaatacaatgatcgctctccatcgttttatgagtcatttatc
cagtgtataataaatctttgattaaatatattttaatttcattGATTGAG
GACTACTATTCCAAGGTGCCTAATTATTATaacattattttttattgaac
caggcatgttttttttaagaacattcaaaatttctgACCTTCCGgaagtt
cttaactttttgagttttaagcttaaaaatcttcttaaaattttcttaat
ttcaccGTTTTGTTAGTGTTTTTGTGAATTTCCTAAGAATTCTTTTATAG
TCCTTAAACTCTTAAAAATCGAAGCCTAATTTTCTTAATAGTTCGTTTCA
AACCTTCTAGGAACACATCGAAGATTGTGAACAATTTCCACTTTGCTGTG
ATTTTTGTAACGCCGTAGAAATCGCCAAATCTGAGGTAAGTTATTATTTA
ACCCTTTAAATGCCACGGTCctatttttctaagttttttaagaaaatcac
caatcacttttgtttattttttcatgaccatgaagcacaattcaattcct
acgagttagaaaAATATACCGCAAAATATACTCggcattggcacttaaag
ggttagaGAAATTATGATGTATAGTTTCAATTGAGAATGATTTAgtaaat
ttagaaaatgttcTTTCCAATCAATCATCAAACATCCTCATGTGTTTCGT
ACAAGCCTCTGAAATGTAGATCTGGAACAAATGATTATTGATTATATGGA
TGATTTAAAGCTTAAAATTCCGAAGTTACAGTTTTACGAATAACCAAAAT
ATTCTATTACAGTATTTAGAgttttttattgcttttaatGGTAAGTTAAT
TTTGTGCATACTTTGCTTGTCTACCTGggttttctgtaaaaaaatgaCCA
CTAACAGATATCGAACAAACTGTATCGGACTGTAGGTGCACTATACTCTT
TAAGTTTTAGCACGTATGTGtagttaatttttattttttctactttttag
tCTAGGCTACTAAAGCCTTGATATCAAATCGATCGAAAGTGTGcattaag
ggaacttattttggcggagacaaaattcgccaaaattaagtATTTTACTT
ACTCGCCAAGATAAGCTCTCGCCGAAATTCTCTTCTGCATTTTGCCAAAA
TAacccctaaaaatcataaaaattgctcaaatgAGGCAAAATAGTACAGA
TTTAGCGTGCtactcgccaaaattagttctcgcaaaaaaataagaaattt
taccattcggcaaaacaagttctcgccaaaattaaagattttaaagattt
tcactGGTCGCCAAAGTTAGTTCTCATTTCCTTGATGTACTTTAGAATCA
ATCTATCGATATTTTGTTTAGAATTCTTGTGATAATGGCATACAGTAAca
cgtttttgtttattttttactaGATGGAAACGCACTTATTACATGATTGT
AAAAAACTACGTCATTCATGTCCATTCGCCAATCTTGGTTGTGAGAAAAA
GGTATAAAGTTCACTGACGTTAATTTTAAGTACCCAACTGGATTttctta
aaagatttttaaatataCCTGAAATTAGTGTAGCAATTATCTGAATTCTT
TTTCAGATGTTTTTAGAAGACCTAAAAGTACACGAGGCAAACTCACATGA
CTACCATTTGCAACTAGCATCTAATAAGATTGCTCTACAAGATCAAGTCA
TCAGCGAACAAACACAAAATGTAGAAATGCTATTGCGAAAAATCGAAAAG
CTCGAAAATAAACCCTCTGTGTTAAGTGATGTTCATGTTTGGAGCATTCC
ATCTTTCACTAGAGAAATCGAAAAGGCTGAAGAAAATTTGTATCTTTCCA
AATTGATTTATACAGCCGATGGGTATAAGATGGAATTCCTCCTATACCCT
AACGGTGATCTCGATAGAGCTGTCAGCTGCTTTTGTAAAAGCGTTGAGGG
TTCTTTCGCTGATTTATTGAAATGGccgatgaaaaaagtgattCGAGTTT
CGATCCTTGATAAGAATGACAATTTGAAAAGTGTATGTAAACTCAAAACT
GAAAATCATAATTCGTTCAAGGAGCCAGTTCACAAACACAAACCTAGAGG
CTGGAAAAGATTTATTCCACACGATCAATTACCCATACTCCTTCATAACG
ACACCTTAACTTTGAAGACAAACATTAGCGACGCagtttaatttattttt
ctgttacTTATCTTTTTAGTTGATTTGTTTTCCAATATTCAACGCATATA
ATAATACATTGATTGATTTTCCATTTTCCTCGACTCTTCCTCAAGCTtgc
tctttatttttctttgttgctctctaagaattctttttaatttttatcaa
tttcaacGTTGCAGAGAAAGTTATGTCGTTCAAAAGTAAATGTTTATATA
GAGGGTAGCACGCGAATAATGCTGTACTTAATATCTTCTATCTGTATCTA
CTACGAGACAGTAAAGGGCTTGACGACTTAAAGTCTTGAAGAGACATTTT
GGTCAGCCTTTTTCACCTATCANTTGCAGAGAAAGTTATGTCGTTCAAAA
GTGAAGAGACATTTCGCTCAGCCTTTTTCACCTATCATTTATCATGAGAT
TACACAAATTGTTATTTGACAATCAAATTTTCAATGCTCTTTTATATCTG
ctaaattttctgtttcatttTCAGctaaagctaaaacaaaaacGAAACAA
ACTAACATAATGAAATGTTAGCTAATGAAACAGGTGGATTCAATGTAGAA
TTTATCACGAATTGCAAACCAGAACAATCTGTATGTTCAATATGCCCCTT
ACTTCTTTTTGACCCTATACAGGCTATTGAATGTGATCATCGGTTGCTGC
ATCACACACCAAataaaaaggtaaaatattttCCCTCTAGACTTTATCAG
TATTTTCCCTACATCCCAAAAAGGGGCAAAGTATTTATTGGCTAATCAAA
TGATTAagattcattcattcatttctacAGGTAGGTGGTGTTAGTATGAA
ATCTAGTTTAAGAAATatatgtctaaacacacacagGAGGACGGTCATGC
TTAACTGACGTGGTTGAAAAAAGGGcgtttaaaattttttgcttGATCTT
TTTGCTTGGCTATTTTGTCGTTTTACTATCTGGTTCCTTGTTGATttggt
tttgatttgatttggttgCTAATATGAGTCAATCAAAAACGAGGAGCTCA
TCAGAAATTTCTAAAATGATTGAGGAAATTTTGGACAGAAAGCTAGAGAA
ACTTGCAACCAAGAAAGATCTTGATGAAATCAAGAAtctttttcagaatt
aaaatgataaaattgaaCTGCAGGTTGCGGCCAGTGATATTGACAGGGCA
CATCGTGTGGGGAAAGAAAGGAAAACAATGAGTTAAATTTTATTCTTTCA
ACAAACGCACGAGCGTATACAAAGCCAGGAAATCAGCCAAAAATAACATT
AAAGTTCATCTGGATTTGACGAATGCACGTTTGAGATTGTTAGATGGTGC
AAAAGAATTGATTACGCCAAATTCCaatgttgattttgtttttgcagATG
TAAACTGTAACGTAGTcgcaaagctaaaaaatgacgATTACAAATTTTTC
GACACCATTGCTTCTTTCAAAGACAGAATTCTACAATCATAGGAGCTTTT
TCTTGTCACATTATATTTTTGTCATCATCACACATATCGATTATTCTGAC
TATTTCTGcctttctaagttttttttcaatgccTTTTTTCTATGTTAAAA
GCACTGGACGTAATTGTATCGATTGCTTCTTTTGTGTTTTATACAtcctt
tttacacttttttcataaTTACACGGCAATTATGGAATCATTTTTTGAGT
TATTACAATTTTATAtgtgttttttatttatgaGCTATGTTTGGAAATCA
ACGTCAGGTAAGAGGTTTGTTGACATCAGAATCTTGTAATGGGAGTAAGT
TTGCAATATAGAGCGTGCATTGGTTTATTTAACtctattaaatttatttt
agtgaGCTTTGACTTTTGTGTGGGTTTTGATTTAAGTCTTTTGGTTTTCC
CGAATCTCTTATTCTGTCTTCCCTActtcattttactttttaatcTTACT
CTTCTTCTCCTATGGGGTGACATTGAGTCGAATCCGGGGCCGGTGGAGAG
GGATAACACCTTGTCTGTTTGTCATTGGAATCTAAATAGCGTTTGGGTTG
ATAACTTTGCGAAGATTGCTCAAATCAcagcttttttaaatgtttataag
tttgatatcttttgtATTGGTGAATCCTTTCTCGATTCTTCTATCGAGAC
GGACGATCTAAGGCTAAAGATTGATAACTATGAACTCCTTAGATCCGACC
ACCCTTCGAATTCTAAAATGGGTGGAGTGTGCCTATATCGCAGAGTTGGT
ATCTCTGTTGAGGAAAGACCTGATCTGTCCTCTCTTGATGAGTGTCTTGT
TCGCGAAGTTAATTCTGGtactaaaaaactttttctttgtctTCTCTATC
GTTCCCCAAGTCAAGACTTTAAGCATAAATGGGAGCAGACAATTATAAAT
ATAAGCAACATTTCTTCTGCTGGCACGATTCTACTTGGTGATTTCAATGG
GAGGAATTCGGAATGGTGGGCTGGAGATACAACAAATTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGCCTTACAGCAT
GGTTTACATCAACTTATTGACGAGCCGACTCACCTTCGTCCCGACTGTTC
ACCTACTTGcatagatcttattttttttcaggctCTTGTTTTTGACTCCG
GGGTTTTGCCTTCACTCCATGCCCGTTGCCACCACCAGATAACCTTTGTG
AAACTTAATTTTCAGGTTAAATTCCCTCCAGCATACAAACGAAAAATTTG
GGATTTTACTAGGGCTGATGAGAGGGGAATCATGCTTGCTCTAAATGCCA
TTGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
tcgcaaaaaaataagaaattttaccaTTCGGCAAAaaaagttctcgccaa
aattaaagattttcaagattttcactgGTCGCCAAAGTTAGTTCTCATTT
CCTTGATGTACTTTAGAATCAATCTATCGATCGatattttgtttaaaact
ctTGTGATAATAACATACAGTAACgcgtttttgtttattttttactaGAT
GGAAACGCACTTATTACAAGATTGTAAAAAACTACGTCATTCATGTCCAT
TCGCTAATCTTGGTTGTGAGAAAAAGGTATAAGTTTCACTGACGTTAATT
TTAAGTACCCAACTGGATTttcttaaaagatttttaaatataCCTTAATA
TGAAGCGGTCGTATCAAGTAGAGTGTCCATTAGCATTACGCAATTTTATG
GGTCGGACCCTAAGCCGGCTCATACCAAAGAACAGGAAATGCCTCTCAGC
TTGATGCTCGTCAACTACTCTAACGTCCCAAATAAACGTCTCCACCGCTt
atttatttttggaaatattttcagctataaCAAGCTGAATTGCTCTATCT
TGCTGAATCTTCTTGTTTTATCttataattaccttattttggggttttcg
gAGGTAAAATTTCTTACGCCCCCTTTTTATTCAGACCTTCCCATttataa
gattttcaaaaaatttgaacccCCAAcctactattcgggaccttagggTA
AAGAGAAATGTCAATGTTTAGTTGGGAAATTCAGGGAAAGGAGTGGTGgt
ctcccctaccttcgggttgCACTCGACTGTGAATAAACCACGGTTCtaca
aaaaactgaaattaGTGTAGCAATTATCTGAATTCTTTTTTCAGATGTTT
TTAGAAGACCTAAAAGTACACGAGGCAAACTCACATGACTACCATTTGCA
ACTAGCATCTAATAAGATTGCTCTACAAGATCAAGTCATCAGCGAACAAA
CACAAAATGTAGAAATGCTATTGCGAAAAATCGAAAAGCTCGAAAATAAA
CCCTCTGTGTTAAGTGATGTTCATGTTTGGAGCATTCCATCTTTCACTAG
AGAAATCGAAAAGGCTGAAGAAAATTTGTATCTTTCCAAATTGATTTATA
CAGCCGATGGGTATAAGATGGAATTCCTCCTATACCCTAACGGTGATCTC
GATAGAGCTGTCAGCTGCTTTTGTAAAAGCGTTGAGGGTTCTTTCGCTGA
TTTATTGAAATGGccgatgaaaaaagtgattCGAGTTTCGATCCTTGATA
AGAATGACAATTTGAAAAGTGTATGTAAACTCAAAACTGAAAATCATAAT
TCGTTCAAGGAGCCAGTTCACAAACACAAACCTAGAGGCTGGAAAAGATT
TATTCCACACGATCAATTACCCATACTCCTTCATAACGACACCTTAACTT
TGAAGATAAACATTAGCGACGCagtttaatttatttttctgttacTTCTT
TTTAGTTGATTTGTTTTCCAATATTCAACGCATATAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052636-exon-scaffold_218-1491911889:726793..726985TCONS_00052636-exon-scaffold_218-1491911889:726793..726985Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:726793..726985TCONS_00052636-exon-scaffold_218-1510915933:726793..726985Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:726793..726985TCONS_00052636-exon-scaffold_218-1575043694:726793..726985Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:730390..730435TCONS_00052636-exon-scaffold_218-1491911889:730390..730435Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:730390..730435TCONS_00052636-exon-scaffold_218-1510915933:730390..730435Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:730390..730435TCONS_00052636-exon-scaffold_218-1575043694:730390..730435Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:730619..730723TCONS_00052636-exon-scaffold_218-1491911889:730619..730723Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:730619..730723TCONS_00052636-exon-scaffold_218-1510915933:730619..730723Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:730619..730723TCONS_00052636-exon-scaffold_218-1575043694:730619..730723Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:731147..731311TCONS_00052636-exon-scaffold_218-1491911889:731147..731311Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:731147..731311TCONS_00052636-exon-scaffold_218-1510915933:731147..731311Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:731147..731311TCONS_00052636-exon-scaffold_218-1575043694:731147..731311Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:732453..732527TCONS_00052636-exon-scaffold_218-1491911889:732453..732527Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:732453..732527TCONS_00052636-exon-scaffold_218-1510915933:732453..732527Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:732453..732527TCONS_00052636-exon-scaffold_218-1575043694:732453..732527Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:737841..737918TCONS_00052636-exon-scaffold_218-1491911889:737841..737918Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:737841..737918TCONS_00052636-exon-scaffold_218-1510915933:737841..737918Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:737841..737918TCONS_00052636-exon-scaffold_218-1575043694:737841..737918Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1491911889:738487..739132TCONS_00052636-exon-scaffold_218-1491911889:738487..739132Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1510915933:738487..739132TCONS_00052636-exon-scaffold_218-1510915933:738487..739132Clytia hemisphaericaexon
TCONS_00052636-exon-scaffold_218-1575043694:738487..739132TCONS_00052636-exon-scaffold_218-1575043694:738487..739132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:726793..739132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.2971e-10	0	0	0	0	0	0	0	0	0	0.588666	0	0	0	0.133657	1.78813e-05	0	0	0	0	0	0	1.28323	0	0	0	0.592638	0.501465	1.12666	0.984407
Blast
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BLAST of TCONS_00052636 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.382e-38
Identity = 127/457 (27.79%), Postives = 203/457 (44.42%), Query Frame = 3 
Query:   51 GYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQKGINGNYICPQDR---IETPLYPDKGKGREISNLIVKCSRNKLGCAWIKELRELDNHLAQCEFELVQCVIEACSMTFQRQFENEHYSKECYYRLKMCSFCSEEYILAYEEEHIEDCEQFPLCCDFCNAVEIAKSEMETHLLQDCKKLRHSCPFANLGCEKKMFLEDLKVHEANSHDYHLQLAS-----------------------------NKIALQDQVISEQTQNVEM-------LLRKIEKLENKPSVL-----SDVHVWSIPSFTREIEKAEEN---LYLSKLIYTAD-GYKMEFLLY---PNGDL-DRAVSCFCKSVEGSFADLLKWPMKKVIRVSILDKND-----NLKSVCKLKTENHNSFKEPVHKHKPRGWKRFIPHDQLPIL-----LHNDTLTLKINIS 1235
            GYDVE  +  LE+   C ICL  L++ +Q   CGHRFCK C+  ++   +  + CP D    +E  L+PD    REI +L+VKC     GC    ELR L++H A CEF L+ C    C   FQ+   N H  K+C  R   C  C+       +E H ++C    + C++CN + I + +M  H   DC      C F+  GC +KM    L  H   +   H+++ +                              ++  QD  I E T  +E        L R I  LE+K + +     + +++W I +F   ++  EE    +  S   YT   GYK+   L+   P        +S F  +++G +   L WP +  IR++ILD+++     N + +   K E   +F+ P     P+G+  ++    L  L     + +DTL ++  +S
Sbjct:   55 GYDVEF-DPPLESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPE-LLAFQRPTIPRNPKGFG-YVTFMHLEALRQRTFIKDDTLLVRCEVS 500
The following BLAST results are available for this feature:
BLAST of TCONS_00052636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF62.382e-3827.79TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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