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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052633 ID=TCONS_00052633|Name=TCONS_00052633|organism=Clytia hemisphaerica|type=transcript|length=401bp
GAAATAACAAAAACGAAACTACTAAAATCAAATACCTTAAATACAATGAA
AGGTGGATATGATGTTGAATTTATAAAAGAGTATCCTGATGACAATGTGA
CATGCTCGATTTGTTTGTATGTTTTACGAGAACCTTTACAATCGATCGAA
TGTGGACACAGATTTTGCGAAAGCTGTGTTGCTGATTTGACAAAATGtGA
CAATGGAAAATATGTTTGTCCAGAAGACAGGAATGAGATGAGTCTTTTTC
CAGACAAAGGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCG
AATTCTAATGCTGGCTGTAGGATGACCCNAGACAAAGGAAAGGAGCGGGA
GATTTTGGGAAGAACTGTCAAATGCCCAAATTCTAATGCTGGATGTAGGT
T Run BLAST on NCBI protein sequence of TCONS_00052633-protein >TCONS_00052633-protein ID=TCONS_00052633-protein|Name=TCONS_00052633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
EITKTKLLKSNTLNTMKGGYDVEFIKEYPDDNVTCSICLYVLREPLQSIE
CGHRFCESCVADLTKCDNGKYVCPEDRNEMSLFPDKGKEREILGRTVKCP
NSNAGCRMTXDKGKEREILGRTVKCPNSNAGCR Run BLAST on NCBI transcript from alignment at scaffold_218:723271..724090+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052633 ID=TCONS_00052633|Name=TCONS_00052633|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_218:723271..724090+ (Clytia hemisphaerica)
GAAATAACAAAAACGAAACTACTAAAATCAAATACCTTAAATACAATGAA
AGGTGGATATGATGTTGAATTTATAAAAGAGTATCCTGATGACAATGTGA
CATGCTCGATTTGTTTGTATGTTTTACGAGAACCTTTACAATCGATCGAA
TGTGGACACAGATTTTGCGAAAGCTGTGTTGCTGATTTGACAAAATGGTA
AATACTTTGATATGCCAAACATTAATTAAGAACATGGCCATCGAAGTCAG
GCGGCAGGTATCTGTAACTCTCCCTCTCAGAGAAGGGTAGGCTACTCTAG
AAGGAAAAAGCCATAGCTACCCCATTTTCATTGTTGTTGAGAAGATGCTT
ATGTATTTGATTGAAAATACAAATTGGCTAGTTTAACTAgaaatttgtgt
tttgtttttcagtGACAATGGAAAATATGTTTGTCCAGAAGACAGGAATG
AGATGAGTGTGAGGatgcatttatttttttattaattttctgaTTCGAGC
CTGAACGAGGAGTTCTATTTACTTCAAATTACTGAGAAAATCTAAttata
aaaagtattttatGAGGGTTTCTCCTAGACGGGAACTGGGAGTTAGTTCG
AGGGCCTACTGTGAGTCCTATCGCGtatacaattttcaaaagtgcAATCT
CTCTTTTTATAGCTTTTTCCAGACAAAGGAAAGGAGCGGGAGATTTTGGG
AAGAACTGTCAAATGCCCGAATTCTAATGCTGGCTGTAGGATGACCCNAG
ACAAAGGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCAAAT
TCTAATGCTGGATGTAGGTT Coding sequence (CDS) from alignment at scaffold_218:723271..724090+ >TCONS_00052633 ID=TCONS_00052633|Name=TCONS_00052633|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_218:723271..724090+ (Clytia hemisphaerica)
GAAATAACAAAAACGAAACTACTAAAATCAAATACCTTAAATACAATGAA
AGGTGGATATGATGTTGAATTTATAAAAGAGTATCCTGATGACAATGTGA
CATGCTCGATTTGTTTGTATGTTTTACGAGAACCTTTACAATCGATCGAA
TGTGGACACAGATTTTGCGAAAGCTGTGTTGCTGATTTGACAAAATGtGA
CAATGGAAAATATGTTTGTCCAGAAGACAGGAATGAGATGAGTCTTTTTC
CAGACAAAGGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCG
AATTCTAATGCTGGCTGTAGGATGACCCNAGACAAAGGAAAGGAGCGGGA
GATTTTGGGAAGAACTGTCAAATGCCCAAATTCTAATGCTGGATGTAGGG
AAATAACAAAAACGAAACTACTAAAATCAAATACCTTAAATACAATGAAA
GGTGGATATGATGTTGAATTTATAAAAGAGTATCCTGATGACAATGTGAC
ATGCTCGATTTGTTTGTATGTTTTACGAGAACCTTTACAATCGATCGAAT
GTGGACACAGATTTTGCGAAAGCTGTGTTGCTGATTTGACAAAATGtGAC
AATGGAAAATATGTTTGTCCAGAAGACAGGAATGAGATGAGTCTTTTTCC
AGACAAAGGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCGA
ATTCTAATGCTGGCTGTAGGATGACCCNAGACAAAGGAAAGGAGCGGGAG
ATTTTGGGAAGAACTGTCAAATGCCCAAATTCTAATGCTGGATGTAGGGA
AATAACAAAAACGAAACTACTAAAATCAAATACCTTAAATACAATGAAAG
GTGGATATGATGTTGAATTTATAAAAGAGTATCCTGATGACAATGTGACA
TGCTCGATTTGTTTGTATGTTTTACGAGAACCTTTACAATCGATCGAATG
TGGACACAGATTTTGCGAAAGCTGTGTTGCTGATTTGACAAAATGtGACA
ATGGAAAATATGTTTGTCCAGAAGACAGGAATGAGATGAGTCTTTTTCCA
GACAAAGGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCGAA
TTCTAATGCTGGCTGTAGGATGACCCNAGACAAAGGAAAGGAGCGGGAGA
TTTTGGGAAGAACTGTCAAATGCCCAAATTCTAATGCTGGATGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052633-exon-scaffold_218-1491911889:723271..723467 | TCONS_00052633-exon-scaffold_218-1491911889:723271..723467 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1510915933:723271..723467 | TCONS_00052633-exon-scaffold_218-1510915933:723271..723467 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1575043694:723271..723467 | TCONS_00052633-exon-scaffold_218-1575043694:723271..723467 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1491911889:723683..723728 | TCONS_00052633-exon-scaffold_218-1491911889:723683..723728 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1510915933:723683..723728 | TCONS_00052633-exon-scaffold_218-1510915933:723683..723728 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1575043694:723683..723728 | TCONS_00052633-exon-scaffold_218-1575043694:723683..723728 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1491911889:723933..724090 | TCONS_00052633-exon-scaffold_218-1491911889:723933..724090 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1510915933:723933..724090 | TCONS_00052633-exon-scaffold_218-1510915933:723933..724090 | Clytia hemisphaerica | exon |
| TCONS_00052633-exon-scaffold_218-1575043694:723933..724090 | TCONS_00052633-exon-scaffold_218-1575043694:723933..724090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:723271..724090 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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