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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052611 ID=TCONS_00052611|Name=TCONS_00052611|organism=Clytia hemisphaerica|type=transcript|length=1370bpRun BLAST on NCBI protein sequence of TCONS_00052611-protein >TCONS_00052611-protein ID=TCONS_00052611-protein|Name=TCONS_00052611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MQSEECGHRFCKTCAANLAKSLNGKKYICPQDRMEVHLFQDRGKEREILGRun BLAST on NCBI transcript from alignment at scaffold_218:678564..682992+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052611 ID=TCONS_00052611|Name=TCONS_00052611|organism=Clytia hemisphaerica|type=transcript|length=4429bp|location=Sequence derived from alignment at scaffold_218:678564..682992+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:678564..682992+ >TCONS_00052611 ID=TCONS_00052611|Name=TCONS_00052611|organism=Clytia hemisphaerica|type=CDS|length=8064bp|location=Sequence derived from alignment at scaffold_218:678564..682992+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052611 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.104e-33 Identity = 115/428 (26.87%), Postives = 193/428 (45.09%), Query Frame = 3
Query: 102 CGHRFCKTCAANLAKSLNGKKYICPQDR---MEVHLFQDRGKEREILGRLIKCTNNKSGCATNIELRYLDVHLKTCEFQIVKCLFSDCEEKVQRKLLEKHSLEDCEYRLKSCIFCFEDYSFNMEKEHMCDCSSFPLCCDYCTEIDIPRNQMQCHVTEKCVKVPTPCEFAPLGCQKQTTIASKESHRIEATQHH---LALALNKL--------IEQQDELKQKSDQLFS--LRSDHE--RLKSKLDAQP--------SISQFKDE------------HIFHLDNFAKLFEEAETGEAFTLH---MYTSQL-HKITISIYFKGYT-QDCKDNVSVFFQCTQGSFDDVAKWPMGGNIDLCVIYVDEEYWNLKLSGESLLSN-----AFKNPKLNTAGQRRGWLKVISQN--RLVSYVDNDCLCLKIKVNYK 1235
CGHRFCK C + KS+ + CP D +E LF D +REIL ++KC N GC +ELR+L+ H CEF ++ C C+ Q+ + H L+DC R SC C +F ++ H +C + C+YC I I R QM H C P PC F+ GC ++ H E TQ H LA A++ L I + ++ QL +R DH+ L +K++ Q +I +D+ +I+ + NF + E + +H YT + +K+ + ++ + T Q C + +S+F QG +D WP G I L ++ D+ ++ + E ++ AF+ P + + G++ + R +++ +D L ++ +V+ +
Sbjct: 85 CGHRFCKAC---IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL--DQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTR 502 The following BLAST results are available for this feature:
BLAST of TCONS_00052611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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