TCONS_00052608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052608
Unique NameTCONS_00052608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=transcript|length=1664bp
AAGTATGGGTTGTTGCTTTCTTGTGATTTTAAAACTAATCAGAATACAAG
GTCCCTCTTTGGGATTAAACGTTTGCCAATACTGTCAATCAAATATGTAA
AAAAGGATACTGTTTTCATTCCCAGGTTGAAAGACTAACAACATTAatgt
gtttctttttttttgttccaagtaaatattttgcttttgcAGCTTTATAT
AATTGAAGGCTGTGATTCtgagtttttaagattttattattttcacaGTG
ACAATGGTGAGCTCATTTGTCCAGAAGATAGAAGTGAGATGAAGCTATTT
CAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGTAC
AAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAA
CTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTTTA
TGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGA
ATGTGATTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATATGC
ACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGC
TGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGATCA
CCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAA
TAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCA
AAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAACA
GAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAATG
AGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAATT
CACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGC
atcgttttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGCAA
GATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAACT
TTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAATC
GATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCG
AATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATAAC
GACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAATA
TCTCAATGGTGATAACCTCACTATACGTATTCagataaaatcttgagaaa
atcttGAATCTCGAAAAACCCTTAATTTGCACTTATCTTttgtaatttca
aaataaaaatttctttaaaagagattttcaaataacTTTGATAGCCcggc
taaaaaataaaattggataCAAACTAAATTTTTTGACCTAGAAAAGGAga
acaattttcataaaaaagtagcaactttttttaattaaatttgattattt
ctttatggacatgttttttaattgtttcgttttcAGGGGTCTTGGGAAAT
CATCATTCATTTCTAATATAATGAATGANaatttgattatttctttatgg
acatgttttttaattgtttcgttttcAGGGGTCTTGGGAAATCATCATTC
ATTTCTAATATAAT
Run BLAST on NCBI

protein sequence of TCONS_00052608-protein

>TCONS_00052608-protein ID=TCONS_00052608-protein|Name=TCONS_00052608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MKLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYEETQC
VITLCSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDEEEHIFECEE
FLLCCDFCTESDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLV
NHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCA
LNEIHTWELQNFKQNWKADKASFSKCFYSPQGYKINARLGPKKDDQSVSI
WFTTLEGPFDDTLEWPMNVESISCCVVDSEEKVYEIFELESEFLKDVALK
PPHNDCVGWEVFIPSDKLSKYLNGDNLTIRIQIKS
Run BLAST on NCBI

transcript from alignment at scaffold_218:659757..663504+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_218:659757..663504+ (Clytia hemisphaerica)
AAGTATGGGTTGTTGCTTTCTTGTGATTTTAAAACTAATCAGAATACAAG
GTCCCTCTTTGGGATTAAACGTTTGCCAATACTGTCAATCAAATATGTAA
AAAAGGATACTGTTTTCATTCCCAGGTTGAAAGACTAACAACATTAatgt
gtttctttttttttgttccaagtaaatattttgcttttgcAGCTTTATAT
AATTGAAGGCTGTGATTCtgagtttttaagattttattattttcacaGTG
ACAATGGTGAGCTCATTTGTCCAGAAGATAGAAGTGAGATGAAGGTAATT
CATCTGATTAATTCTTTTCTTGAgataatttcttcaaaaatatttaaaac
atctCCAAAACACTTTAGACCAATTTCTAGTTTAATTGGCTGCCATTTTG
ACCAATACCTTAATTCCATTAACTTTTGCGCCTTTTATTTTTGTGCACCT
TTAAAATANGACCAATTTCTAGTTTAATTGGCTGCCATTTTGACCAATAC
CTTAATTCCATTAACTTTTGCGCCTTTTATTTTTGTGCACCTTTAAAATA
TAAGATATTCCTTTAAAATATACCTTTAAGATGTTCCTGAACCCTCTAAT
TTTTGCCCATCTTGTTATTTCTGAGATATGTTATAAAGTGAtgaattctc
aacttcagttgagctagaatctgagaatgtctgtgtgttTAAACTCACTC
TACAAATGCAAAATCTCCATTGCTGAGGATATTAATGTTACAGTAAGCTT
TTTAACACAGGGCTGGTAAATGGGTGTTTTTCTTGTAGCCAATGTACATG
TTTTATCAGCTTTTATAAGCacgatttatttttatttttaactaGTCCAC
ACAACAGACTGTTGCGAACTTTAACCAGATTTGAAACTCTGAAAGAGGGA
TATTTTGATGTAGCTTAATTTATAGTATattatacttgatcaattttaTG
TTCATCACTTTTAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTA
GGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAA
TGAGTTGCGCCAGCTTGAAGTAATTCTCAATATCAGCACTTTCATTACAT
TCTGAAAAACTTTTCCTGAACATTGAATTATCAGGAATAATTGCTTTAaa
tggattaaattttgcattGACTTATTTTCGCGACTTTCATAAATTTAGTC
CTCGTCAAAGATTTGAAATCAGAATTTTTACCAAAACTcctaggaaaatg
aatgaaaataggTCAAATAGGTCAAATAGAGGCTGATTCGCAAATTTTAA
TccatgtgaaaattttagatctTAGATTCGGGTAAGTTTGATTAGGGGCT
CAAAAATGAATAATTTAGTAATGAATAATAGTTTTGCTTAAATGAATAAT
TTGATtcattggaaaattggaaaacatttatttgtttttttggattttgc
ttCTTCAGACATTAAAAATTGAAGTTTTATACAAACTATAACTAATAAAT
ATACTTTTGTTTCTTAGACTCACCAATCAGAATGTGGTTACGAGGAAACA
CAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGA
GCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATATT
GCACAGAAGAATATATGCACTACGATGAGGAAGTTAGCATTCTTGTTCTT
TTCATTTATTGACTTTTACATGGGACTTTTGGGGAAAAGGAGACAACTTC
ACCTAACTGGACATGCAGGAGAGCTCATTATGAAATAAATAATTCCGcaa
taaatatgatttttttaaaagacaTTTCATTTAAGGAATTTTTCACCTAT
TTTAGGGATGGGTCTGTAGGGGTTCAAAATACTGTTTTcccatcaaaatt
tttgctgaatctcGGAATCctgaaaattgagaaaaacgATAACACCGTCA
AAATCGTTGAAATACCGTTTTCAGGTCTCTTCTtagtcaaatcccgtaat
accgtactaaataATAAATAGGGCCAAATCTCGTCACACCGTAAATGTAC
AAACCCCCCCATTTTAGGCATCCAAATTCAAGGCACTAAAGCTTTCTTAA
AATGAGATAACATTTTGAGGTTTTAGATTATATTCCTGACCCCAAAATCC
TGCGGCTGTACCCCTCTACTTTCAATCAGGAATTTAAAAGTGTTTTAAAA
GTGTTTATAATAATATAAGTCTTCTCCCTCATTTAATTATAGattgattt
cctttttttttaactttaggaGCACATTTTTGAGTGCGAAGAATTTCTAT
TGTGCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGGTTTTA
ATCAAACATTTATTGAATTTTTCTTAATTTTTCTTTTTTCTTTATATATT
TAGAGATAAACATAATCTAACTTGCTCTAAAACACAGCACTTAGAAGAAA
CATTCGAGCCATCTCTTCCCTGGATTTTGCTAAATTCGACATAATTTCCA
TATTCTACTTATTACTGTTCATTTTAGTTGAATGATCACCTTTCAAATTA
CTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTG
AAAAGGTAAAGAACCACTTTTTATGTATCCCAATATATCGAGCTTCTGTT
AAATTAAATACAATGTCAACCCCTCTTCTTGGGACAAATCATAGAGTGAA
AGGATGAGAAACTTTAGAAATGACATTTTGGACTCTAACATTTTGAGCTC
GATTCTCTGATCAACATGAGGTTTGTATAATTGTAATATCCCTCTCTTTA
GCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAAC
ATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTTCA
GCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGACA
TCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATTAC
AGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaatgt
ttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAA
GGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTG
ATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTT
GTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATT
TCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTGGG
AAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATAAC
CTCACTATACGTATTCagataaaatcttgagaaaatcttGAATCTCGAAA
AACCCTTAATTTGCACTTATCTTttgtaatttcaaaataaaaatttcttt
aaaagagattttcaaataacTTTGATAGCCcggctaaaaaataaaattgg
ataCAAACTAAATTTTTTGACCTAGAAAAGGAgaacaattttcataaaaa
agtagcaactttttttaattaaatttgattatttctttatggacatgttt
tttaattgtttcgttttcAGGGGTCTTGGGAAATCATCATTCATTTCTAA
TATAATGAATGANaatttgattatttctttatggacatgttttttaattg
tttcgttttcAGGGGTCTTGGGAAATCATCATTCATTTCTAATATAAT

Coding sequence (CDS) from alignment at scaffold_218:659757..663504+

>TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_218:659757..663504+ (Clytia hemisphaerica)
ATGAAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCAT
GGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGC
GCCAGCTTGAAACTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGT
GTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACA
TCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATATTGCACAG
AAGAATATATGCACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAA
TTTCTATTGTGCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAA
GTTGAATGATCACCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTC
CATTTGAAACAATAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTC
AATCATAAGTCAAAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCA
AATAAAGGAACAGAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTG
GACTGGAAAATGAGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCT
TTAAACGAAATTCACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAA
AGCAGACAAGGCatcgttttcaaaatgtttctaTTCTCCACAAGGCTACA
AGATCAACGCAAGATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATT
TGGTTTACAACTTTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAAT
GAATGTAGAATCGATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTT
ACGAAATTTTCGAATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAA
CCACCACATAACGACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAA
GCTATCTAAATATCTCAATGGTGATAACCTCACTATACGTATTCagataa
aatcttgaATGAAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTA
GGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAA
TGAGTTGCGCCAGCTTGAAACTCACCAATCAGAATGTGGTTACGAGGAAA
CACAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTA
GAGCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATA
TTGCACAGAAGAATATATGCACTACGATGAGGAAgaGCACATTTTTGAGT
GCGAAGAATTTCTATTGTGCTGCGACTTTTGCACTGAATCCGATATTCCG
AGGAAAAAGTTGAATGATCACCTTTCAAATTACTGCACCAAAGTACCACA
CTCTTGTCCATTTGAAACAATAGGCTGTCGTGAAAAGCTGATGTTAGAAG
ATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAACATTTGATGTTAGCT
TTAGACCAAATAAAGGAACAGAAAATTGAACTTTCAGCAAAAGATCAGAG
AATTACTGGACTGGAAAATGAGGTGAGATCTCGACATCAGCAGCAAAAAT
TATGTGCTTTAAACGAAATTCACACCTGGGAATTACAGAACTTCAAGCAA
AATTGGAAAGCAGACAAGGCatcgttttcaaaatgtttctaTTCTCCACA
AGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAAGGATGACCAGTCTG
TTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTGATGACACTTTAGAA
TGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTTGTTGATAGCGAGGA
AAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATTTCTCAAAGATGTTG
CTTTGAAACCACCACATAACGACTGCGTGGGGTGGGAAGTCTTTATACCA
AGTGACAAGCTATCTAAATATCTCAATGGTGATAACCTCACTATACGTAT
TCagataaaatcttgaATGAAGCTATTTCAAGATAAAGGACGGGAGAGGG
AAATATTAGGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAA
TGGCAAAATGAGTTGCGCCAGCTTGAAACTCACCAATCAGAATGTGGTTA
CGAGGAAACACAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAA
GATTGCTAGAGCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACT
TGTTTATATTGCACAGAAGAATATATGCACTACGATGAGGAAgaGCACAT
TTTTGAGTGCGAAGAATTTCTATTGTGCTGCGACTTTTGCACTGAATCCG
ATATTCCGAGGAAAAAGTTGAATGATCACCTTTCAAATTACTGCACCAAA
GTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTGAAAAGCTGAT
GTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAACATTTGA
TGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTTCAGCAAAA
GATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGACATCAGCA
GCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATTACAGAACT
TCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaatgtttctaT
TCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAAGGATGA
CCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTGATGACA
CTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTTGTTGAT
AGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATTTCTCAA
AGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTGGGAAGTCT
TTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATAACCTCACT
ATACGTATTCagataaaatcttgaATGAAGCTATTTCAAGATAAAGGACG
GGAGAGGGAAATATTAGGAATCATGGTGAAATGTACAAACAATCAAAGTG
GCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAACTCACCAATCAGAA
TGTGGTTACGAGGAAACACAGTGTGTGATCACTTTATGCTCAAAAAGAGT
TCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGAATGTGATTACAGAT
TTGTCACTTGTTTATATTGCACAGAAGAATATATGCACTACGATGAGGAA
gaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGCTGCGACTTTTGCAC
TGAATCCGATATTCCGAGGAAAAAGTTGAATGATCACCTTTCAAATTACT
GCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTGAA
AAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAA
ACATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTT
CAGCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGA
CATCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATT
ACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaat
gtttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAG
AAGGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTT
TGATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTG
TTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAA
TTTCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTG
GGAAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATA
ACCTCACTATACGTATTCagataaaatcttgaATGAAGCTATTTCAAGAT
AAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGTACAAACAA
TCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAACTCACC
AATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTTTATGCTCA
AAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGAATGTGA
TTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATATGCACTACG
ATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGCTGCGAC
TTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGATCACCTTTC
AAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCT
GTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCG
ATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAAT
TGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGA
GATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACC
TGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgtt
ttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAG
GTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAG
GGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTC
TTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGG
AGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGC
GTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAA
TGGTGATAACCTCACTATACGTATTCagataaaatcttgaATGAAGCTAT
TTCAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGT
ACAAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGA
AACTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTT
TATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAA
GAATGTGATTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATAT
GCACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGT
GCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGAT
CACCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAAC
AATAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGT
CAAAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAA
CAGAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAA
TGAGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAA
TTCACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAG
GCatcgttttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGC
AAGATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAA
CTTTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAA
TCGATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTT
CGAATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATA
ACGACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAA
TATCTCAATGGTGATAACCTCACTATACGTATTCagataaaatcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033256XLOC_033256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052608-proteinTCONS_00052608-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052608-exon-scaffold_218-1491911889:659757..660050TCONS_00052608-exon-scaffold_218-1491911889:659757..660050Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:659757..660050TCONS_00052608-exon-scaffold_218-1510915933:659757..660050Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:659757..660050TCONS_00052608-exon-scaffold_218-1575043694:659757..660050Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1491911889:660721..660825TCONS_00052608-exon-scaffold_218-1491911889:660721..660825Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:660721..660825TCONS_00052608-exon-scaffold_218-1510915933:660721..660825Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:660721..660825TCONS_00052608-exon-scaffold_218-1575043694:660721..660825Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1491911889:661274..661438TCONS_00052608-exon-scaffold_218-1491911889:661274..661438Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:661274..661438TCONS_00052608-exon-scaffold_218-1510915933:661274..661438Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:661274..661438TCONS_00052608-exon-scaffold_218-1575043694:661274..661438Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1491911889:662026..662100TCONS_00052608-exon-scaffold_218-1491911889:662026..662100Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:662026..662100TCONS_00052608-exon-scaffold_218-1510915933:662026..662100Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:662026..662100TCONS_00052608-exon-scaffold_218-1575043694:662026..662100Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1491911889:662284..662361TCONS_00052608-exon-scaffold_218-1491911889:662284..662361Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:662284..662361TCONS_00052608-exon-scaffold_218-1510915933:662284..662361Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:662284..662361TCONS_00052608-exon-scaffold_218-1575043694:662284..662361Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1491911889:662558..663504TCONS_00052608-exon-scaffold_218-1491911889:662558..663504Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1510915933:662558..663504TCONS_00052608-exon-scaffold_218-1510915933:662558..663504Clytia hemisphaericaexon
TCONS_00052608-exon-scaffold_218-1575043694:662558..663504TCONS_00052608-exon-scaffold_218-1575043694:662558..663504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:659757..663504 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.3427	9.35451	4.1939	3.64369	2.35474	1.66298	4.04402	3.287	3.58852	2.46877	2.80629	3.8923	3.57936	4.22821	3.286	3.06123	2.4882	2.63724	1.07999	1.28899	1.67896	1.46954	10.5073	8.44293	7.43492	7.08647	1.10732	0.922337	5.07262	5.90431
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00052608 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.648e-20
Identity = 83/361 (22.99%), Postives = 142/361 (39.34%), Query Frame = 1 
Query:  211 CDSEFLRFYYFHSDNGELICPEDRSEM---KLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYE----ETQCVITL-------------------------------------------------CSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDXXXXXXXXXXXXXXXXXXX--XSDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLVNHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCALNEIHTWELQNFKQNWKADKAS-----FSKCFYSPQ-GYK--INARLGPKKDDQS--VSIWFTTLEGPFDDTLEWPM 1089
            C  EFL         G   CPED+  +   K++ D   E ++LG+ ++C +++ GC+W   LR L+ H + C +       +C + L                                                 C  R+ RRLL QH + EC  R   C YCT+E++ +D  +        L            + R+ L  HL + C      CPF+  GC+ +     +  H  ++++ HL +    +  Q+ EL            E+R R  ++     + +  W++ ++ +  +  KA      FS  FY+ + GYK  ++A L      +   +S++   L G FD+ LEWP 
Sbjct:   42 CLQEFL-------SEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQEL-----------QELR-RELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPF 382
The following BLAST results are available for this feature:
BLAST of TCONS_00052608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF43.648e-2022.99TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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