|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=transcript|length=1664bp AAGTATGGGTTGTTGCTTTCTTGTGATTTTAAAACTAATCAGAATACAAG GTCCCTCTTTGGGATTAAACGTTTGCCAATACTGTCAATCAAATATGTAA AAAAGGATACTGTTTTCATTCCCAGGTTGAAAGACTAACAACATTAatgt gtttctttttttttgttccaagtaaatattttgcttttgcAGCTTTATAT AATTGAAGGCTGTGATTCtgagtttttaagattttattattttcacaGTG ACAATGGTGAGCTCATTTGTCCAGAAGATAGAAGTGAGATGAAGCTATTT CAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGTAC AAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAA CTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTTTA TGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGA ATGTGATTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATATGC ACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGC TGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGATCA CCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAA TAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCA AAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAACA GAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAATG AGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAATT CACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGC atcgttttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGCAA GATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAACT TTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAATC GATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCG AATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATAAC GACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAATA TCTCAATGGTGATAACCTCACTATACGTATTCagataaaatcttgagaaa atcttGAATCTCGAAAAACCCTTAATTTGCACTTATCTTttgtaatttca aaataaaaatttctttaaaagagattttcaaataacTTTGATAGCCcggc taaaaaataaaattggataCAAACTAAATTTTTTGACCTAGAAAAGGAga acaattttcataaaaaagtagcaactttttttaattaaatttgattattt ctttatggacatgttttttaattgtttcgttttcAGGGGTCTTGGGAAAT CATCATTCATTTCTAATATAATGAATGANaatttgattatttctttatgg acatgttttttaattgtttcgttttcAGGGGTCTTGGGAAATCATCATTC ATTTCTAATATAAT Run BLAST on NCBI protein sequence of TCONS_00052608-protein >TCONS_00052608-protein ID=TCONS_00052608-protein|Name=TCONS_00052608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MKLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYEETQC VITLCSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDEEEHIFECEE FLLCCDFCTESDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLV NHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCA LNEIHTWELQNFKQNWKADKASFSKCFYSPQGYKINARLGPKKDDQSVSI WFTTLEGPFDDTLEWPMNVESISCCVVDSEEKVYEIFELESEFLKDVALK PPHNDCVGWEVFIPSDKLSKYLNGDNLTIRIQIKS Run BLAST on NCBI transcript from alignment at scaffold_218:659757..663504+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_218:659757..663504+ (Clytia hemisphaerica) AAGTATGGGTTGTTGCTTTCTTGTGATTTTAAAACTAATCAGAATACAAG
GTCCCTCTTTGGGATTAAACGTTTGCCAATACTGTCAATCAAATATGTAA
AAAAGGATACTGTTTTCATTCCCAGGTTGAAAGACTAACAACATTAatgt
gtttctttttttttgttccaagtaaatattttgcttttgcAGCTTTATAT
AATTGAAGGCTGTGATTCtgagtttttaagattttattattttcacaGTG
ACAATGGTGAGCTCATTTGTCCAGAAGATAGAAGTGAGATGAAGGTAATT
CATCTGATTAATTCTTTTCTTGAgataatttcttcaaaaatatttaaaac
atctCCAAAACACTTTAGACCAATTTCTAGTTTAATTGGCTGCCATTTTG
ACCAATACCTTAATTCCATTAACTTTTGCGCCTTTTATTTTTGTGCACCT
TTAAAATANGACCAATTTCTAGTTTAATTGGCTGCCATTTTGACCAATAC
CTTAATTCCATTAACTTTTGCGCCTTTTATTTTTGTGCACCTTTAAAATA
TAAGATATTCCTTTAAAATATACCTTTAAGATGTTCCTGAACCCTCTAAT
TTTTGCCCATCTTGTTATTTCTGAGATATGTTATAAAGTGAtgaattctc
aacttcagttgagctagaatctgagaatgtctgtgtgttTAAACTCACTC
TACAAATGCAAAATCTCCATTGCTGAGGATATTAATGTTACAGTAAGCTT
TTTAACACAGGGCTGGTAAATGGGTGTTTTTCTTGTAGCCAATGTACATG
TTTTATCAGCTTTTATAAGCacgatttatttttatttttaactaGTCCAC
ACAACAGACTGTTGCGAACTTTAACCAGATTTGAAACTCTGAAAGAGGGA
TATTTTGATGTAGCTTAATTTATAGTATattatacttgatcaattttaTG
TTCATCACTTTTAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTA
GGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAA
TGAGTTGCGCCAGCTTGAAGTAATTCTCAATATCAGCACTTTCATTACAT
TCTGAAAAACTTTTCCTGAACATTGAATTATCAGGAATAATTGCTTTAaa
tggattaaattttgcattGACTTATTTTCGCGACTTTCATAAATTTAGTC
CTCGTCAAAGATTTGAAATCAGAATTTTTACCAAAACTcctaggaaaatg
aatgaaaataggTCAAATAGGTCAAATAGAGGCTGATTCGCAAATTTTAA
TccatgtgaaaattttagatctTAGATTCGGGTAAGTTTGATTAGGGGCT
CAAAAATGAATAATTTAGTAATGAATAATAGTTTTGCTTAAATGAATAAT
TTGATtcattggaaaattggaaaacatttatttgtttttttggattttgc
ttCTTCAGACATTAAAAATTGAAGTTTTATACAAACTATAACTAATAAAT
ATACTTTTGTTTCTTAGACTCACCAATCAGAATGTGGTTACGAGGAAACA
CAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGA
GCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATATT
GCACAGAAGAATATATGCACTACGATGAGGAAGTTAGCATTCTTGTTCTT
TTCATTTATTGACTTTTACATGGGACTTTTGGGGAAAAGGAGACAACTTC
ACCTAACTGGACATGCAGGAGAGCTCATTATGAAATAAATAATTCCGcaa
taaatatgatttttttaaaagacaTTTCATTTAAGGAATTTTTCACCTAT
TTTAGGGATGGGTCTGTAGGGGTTCAAAATACTGTTTTcccatcaaaatt
tttgctgaatctcGGAATCctgaaaattgagaaaaacgATAACACCGTCA
AAATCGTTGAAATACCGTTTTCAGGTCTCTTCTtagtcaaatcccgtaat
accgtactaaataATAAATAGGGCCAAATCTCGTCACACCGTAAATGTAC
AAACCCCCCCATTTTAGGCATCCAAATTCAAGGCACTAAAGCTTTCTTAA
AATGAGATAACATTTTGAGGTTTTAGATTATATTCCTGACCCCAAAATCC
TGCGGCTGTACCCCTCTACTTTCAATCAGGAATTTAAAAGTGTTTTAAAA
GTGTTTATAATAATATAAGTCTTCTCCCTCATTTAATTATAGattgattt
cctttttttttaactttaggaGCACATTTTTGAGTGCGAAGAATTTCTAT
TGTGCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGGTTTTA
ATCAAACATTTATTGAATTTTTCTTAATTTTTCTTTTTTCTTTATATATT
TAGAGATAAACATAATCTAACTTGCTCTAAAACACAGCACTTAGAAGAAA
CATTCGAGCCATCTCTTCCCTGGATTTTGCTAAATTCGACATAATTTCCA
TATTCTACTTATTACTGTTCATTTTAGTTGAATGATCACCTTTCAAATTA
CTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTG
AAAAGGTAAAGAACCACTTTTTATGTATCCCAATATATCGAGCTTCTGTT
AAATTAAATACAATGTCAACCCCTCTTCTTGGGACAAATCATAGAGTGAA
AGGATGAGAAACTTTAGAAATGACATTTTGGACTCTAACATTTTGAGCTC
GATTCTCTGATCAACATGAGGTTTGTATAATTGTAATATCCCTCTCTTTA
GCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAAC
ATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTTCA
GCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGACA
TCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATTAC
AGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaatgt
ttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAA
GGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTG
ATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTT
GTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATT
TCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTGGG
AAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATAAC
CTCACTATACGTATTCagataaaatcttgagaaaatcttGAATCTCGAAA
AACCCTTAATTTGCACTTATCTTttgtaatttcaaaataaaaatttcttt
aaaagagattttcaaataacTTTGATAGCCcggctaaaaaataaaattgg
ataCAAACTAAATTTTTTGACCTAGAAAAGGAgaacaattttcataaaaa
agtagcaactttttttaattaaatttgattatttctttatggacatgttt
tttaattgtttcgttttcAGGGGTCTTGGGAAATCATCATTCATTTCTAA
TATAATGAATGANaatttgattatttctttatggacatgttttttaattg
tttcgttttcAGGGGTCTTGGGAAATCATCATTCATTTCTAATATAAT Coding sequence (CDS) from alignment at scaffold_218:659757..663504+ >TCONS_00052608 ID=TCONS_00052608|Name=TCONS_00052608|organism=Clytia hemisphaerica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_218:659757..663504+ (Clytia hemisphaerica) ATGAAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCAT GGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGC GCCAGCTTGAAACTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGT GTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACA TCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATATTGCACAG AAGAATATATGCACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAA TTTCTATTGTGCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAA GTTGAATGATCACCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTC CATTTGAAACAATAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTC AATCATAAGTCAAAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCA AATAAAGGAACAGAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTG GACTGGAAAATGAGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCT TTAAACGAAATTCACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAA AGCAGACAAGGCatcgttttcaaaatgtttctaTTCTCCACAAGGCTACA AGATCAACGCAAGATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATT TGGTTTACAACTTTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAAT GAATGTAGAATCGATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTT ACGAAATTTTCGAATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAA CCACCACATAACGACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAA GCTATCTAAATATCTCAATGGTGATAACCTCACTATACGTATTCagataa aatcttgaATGAAGCTATTTCAAGATAAAGGACGGGAGAGGGAAATATTA GGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAATGGCAAAA TGAGTTGCGCCAGCTTGAAACTCACCAATCAGAATGTGGTTACGAGGAAA CACAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAAGATTGCTA GAGCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACTTGTTTATA TTGCACAGAAGAATATATGCACTACGATGAGGAAgaGCACATTTTTGAGT GCGAAGAATTTCTATTGTGCTGCGACTTTTGCACTGAATCCGATATTCCG AGGAAAAAGTTGAATGATCACCTTTCAAATTACTGCACCAAAGTACCACA CTCTTGTCCATTTGAAACAATAGGCTGTCGTGAAAAGCTGATGTTAGAAG ATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAACATTTGATGTTAGCT TTAGACCAAATAAAGGAACAGAAAATTGAACTTTCAGCAAAAGATCAGAG AATTACTGGACTGGAAAATGAGGTGAGATCTCGACATCAGCAGCAAAAAT TATGTGCTTTAAACGAAATTCACACCTGGGAATTACAGAACTTCAAGCAA AATTGGAAAGCAGACAAGGCatcgttttcaaaatgtttctaTTCTCCACA AGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAAGGATGACCAGTCTG TTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTGATGACACTTTAGAA TGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTTGTTGATAGCGAGGA AAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATTTCTCAAAGATGTTG CTTTGAAACCACCACATAACGACTGCGTGGGGTGGGAAGTCTTTATACCA AGTGACAAGCTATCTAAATATCTCAATGGTGATAACCTCACTATACGTAT TCagataaaatcttgaATGAAGCTATTTCAAGATAAAGGACGGGAGAGGG AAATATTAGGAATCATGGTGAAATGTACAAACAATCAAAGTGGCTGCAAA TGGCAAAATGAGTTGCGCCAGCTTGAAACTCACCAATCAGAATGTGGTTA CGAGGAAACACAGTGTGTGATCACTTTATGCTCAAAAAGAGTTCAAAGAA GATTGCTAGAGCAACATCATTCTGAAGAATGTGATTACAGATTTGTCACT TGTTTATATTGCACAGAAGAATATATGCACTACGATGAGGAAgaGCACAT TTTTGAGTGCGAAGAATTTCTATTGTGCTGCGACTTTTGCACTGAATCCG ATATTCCGAGGAAAAAGTTGAATGATCACCTTTCAAATTACTGCACCAAA GTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTGAAAAGCTGAT GTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAAACATTTGA TGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTTCAGCAAAA GATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGACATCAGCA GCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATTACAGAACT TCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaatgtttctaT TCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAGAAGGATGA CCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTTTGATGACA CTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTGTTGTTGAT AGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAATTTCTCAA AGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTGGGAAGTCT TTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATAACCTCACT ATACGTATTCagataaaatcttgaATGAAGCTATTTCAAGATAAAGGACG GGAGAGGGAAATATTAGGAATCATGGTGAAATGTACAAACAATCAAAGTG GCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAACTCACCAATCAGAA TGTGGTTACGAGGAAACACAGTGTGTGATCACTTTATGCTCAAAAAGAGT TCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGAATGTGATTACAGAT TTGTCACTTGTTTATATTGCACAGAAGAATATATGCACTACGATGAGGAA gaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGCTGCGACTTTTGCAC TGAATCCGATATTCCGAGGAAAAAGTTGAATGATCACCTTTCAAATTACT GCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCTGTCGTGAA AAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCGATTGAAAA ACATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAATTGAACTTT CAGCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGAGATCTCGA CATCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACCTGGGAATT ACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgttttcaaaat gtttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAGGTCCAAAG AAGGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAGGGGCCCTT TGATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTCTTGTTGTG TTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGGAGTCAGAA TTTCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGCGTGGGGTG GGAAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAATGGTGATA ACCTCACTATACGTATTCagataaaatcttgaATGAAGCTATTTCAAGAT AAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGTACAAACAA TCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGAAACTCACC AATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTTTATGCTCA AAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAAGAATGTGA TTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATATGCACTACG ATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGTGCTGCGAC TTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGATCACCTTTC AAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAACAATAGGCT GTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGTCAAAGGCG ATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAACAGAAAAT TGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAATGAGGTGA GATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAATTCACACC TGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAGGCatcgtt ttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGCAAGATTAG GTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAACTTTAGAG GGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAATCGATTTC TTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTTCGAATTGG AGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATAACGACTGC GTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAATATCTCAA TGGTGATAACCTCACTATACGTATTCagataaaatcttgaATGAAGCTAT TTCAAGATAAAGGACGGGAGAGGGAAATATTAGGAATCATGGTGAAATGT ACAAACAATCAAAGTGGCTGCAAATGGCAAAATGAGTTGCGCCAGCTTGA AACTCACCAATCAGAATGTGGTTACGAGGAAACACAGTGTGTGATCACTT TATGCTCAAAAAGAGTTCAAAGAAGATTGCTAGAGCAACATCATTCTGAA GAATGTGATTACAGATTTGTCACTTGTTTATATTGCACAGAAGAATATAT GCACTACGATGAGGAAgaGCACATTTTTGAGTGCGAAGAATTTCTATTGT GCTGCGACTTTTGCACTGAATCCGATATTCCGAGGAAAAAGTTGAATGAT CACCTTTCAAATTACTGCACCAAAGTACCACACTCTTGTCCATTTGAAAC AATAGGCTGTCGTGAAAAGCTGATGTTAGAAGATTTGGTCAATCATAAGT CAAAGGCGATTGAAAAACATTTGATGTTAGCTTTAGACCAAATAAAGGAA CAGAAAATTGAACTTTCAGCAAAAGATCAGAGAATTACTGGACTGGAAAA TGAGGTGAGATCTCGACATCAGCAGCAAAAATTATGTGCTTTAAACGAAA TTCACACCTGGGAATTACAGAACTTCAAGCAAAATTGGAAAGCAGACAAG GCatcgttttcaaaatgtttctaTTCTCCACAAGGCTACAAGATCAACGC AAGATTAGGTCCAAAGAAGGATGACCAGTCTGTTAGCATTTGGTTTACAA CTTTAGAGGGGCCCTTTGATGACACTTTAGAATGGCCAATGAATGTAGAA TCGATTTCTTGTTGTGTTGTTGATAGCGAGGAAAAAGTTTACGAAATTTT CGAATTGGAGTCAGAATTTCTCAAAGATGTTGCTTTGAAACCACCACATA ACGACTGCGTGGGGTGGGAAGTCTTTATACCAAGTGACAAGCTATCTAAA TATCTCAATGGTGATAACCTCACTATACGTATTCagataaaatcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052608-exon-scaffold_218-1491911889:659757..660050 | TCONS_00052608-exon-scaffold_218-1491911889:659757..660050 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:659757..660050 | TCONS_00052608-exon-scaffold_218-1510915933:659757..660050 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:659757..660050 | TCONS_00052608-exon-scaffold_218-1575043694:659757..660050 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1491911889:660721..660825 | TCONS_00052608-exon-scaffold_218-1491911889:660721..660825 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:660721..660825 | TCONS_00052608-exon-scaffold_218-1510915933:660721..660825 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:660721..660825 | TCONS_00052608-exon-scaffold_218-1575043694:660721..660825 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1491911889:661274..661438 | TCONS_00052608-exon-scaffold_218-1491911889:661274..661438 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:661274..661438 | TCONS_00052608-exon-scaffold_218-1510915933:661274..661438 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:661274..661438 | TCONS_00052608-exon-scaffold_218-1575043694:661274..661438 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1491911889:662026..662100 | TCONS_00052608-exon-scaffold_218-1491911889:662026..662100 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:662026..662100 | TCONS_00052608-exon-scaffold_218-1510915933:662026..662100 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:662026..662100 | TCONS_00052608-exon-scaffold_218-1575043694:662026..662100 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1491911889:662284..662361 | TCONS_00052608-exon-scaffold_218-1491911889:662284..662361 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:662284..662361 | TCONS_00052608-exon-scaffold_218-1510915933:662284..662361 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:662284..662361 | TCONS_00052608-exon-scaffold_218-1575043694:662284..662361 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1491911889:662558..663504 | TCONS_00052608-exon-scaffold_218-1491911889:662558..663504 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1510915933:662558..663504 | TCONS_00052608-exon-scaffold_218-1510915933:662558..663504 | Clytia hemisphaerica | exon |
TCONS_00052608-exon-scaffold_218-1575043694:662558..663504 | TCONS_00052608-exon-scaffold_218-1575043694:662558..663504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_218 | supercontig | scaffold_218:659757..663504 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00052608 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.648e-20 Identity = 83/361 (22.99%), Postives = 142/361 (39.34%), Query Frame = 1
Query: 211 CDSEFLRFYYFHSDNGELICPEDRSEM---KLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYE----ETQCVITL-------------------------------------------------CSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDXXXXXXXXXXXXXXXXXXX--XSDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLVNHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCALNEIHTWELQNFKQNWKADKAS-----FSKCFYSPQ-GYK--INARLGPKKDDQS--VSIWFTTLEGPFDDTLEWPM 1089
C EFL G CPED+ + K++ D E ++LG+ ++C +++ GC+W LR L+ H + C + +C + L C R+ RRLL QH + EC R C YCT+E++ +D + L + R+ L HL + C CPF+ GC+ + + H ++++ HL + + Q+ EL E+R R ++ + + W++ ++ + + KA FS FY+ + GYK ++A L + +S++ L G FD+ LEWP
Sbjct: 42 CLQEFL-------SEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQEL-----------QELR-RELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPF 382
The following BLAST results are available for this feature:
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