TCONS_00052547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052547
Unique NameTCONS_00052547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052547 ID=TCONS_00052547|Name=TCONS_00052547|organism=Clytia hemisphaerica|type=transcript|length=309bp
AAGGAAGTATCCGAGAGTTTGGATGAAATTGAGTTAGACGAGGATGCGGA
GATTGTGAGTTTCGATGTTGTCTCGTTATACACCAACGTGCCCGTAGATG
ACGCCATCCAAGTTTGTTCGGATCTATTGTATGATGGTGATTACCCAAAA
CCTCCAGTAgataaacaaacttttattgaaCTTTTAACGATCTGTAGTAA
GGACGTAATAATGTTGACGGATGATGGCTTCTACCGCCAAACCGACGGCC
TCGCTATGGGAAGCCCTCCAGCTCCAATGTTAGCAAATGGCTGGATGAGC
ACCTTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00052547-protein

>TCONS_00052547-protein ID=TCONS_00052547-protein|Name=TCONS_00052547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
KEVSESLDEIELDEDAEIVSFDVVSLYTNVPVDDAIQVCSDLLYDGDYPK
PPVDKQTFIELLTICSKDVIMLTDDGFYRQTDGLAMGSPPAPMLANGWMS
TFE
Run BLAST on NCBI

transcript from alignment at scaffold_217:233470..233778

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052547 ID=TCONS_00052547|Name=TCONS_00052547|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at scaffold_217:233470..233778 (Clytia hemisphaerica)
TTCGAAGGTGCTCATCCAGCCATTTGCTAACATTGGAGCTGGAGGGCTTC
CCATAGCGAGGCCGTCGGTTTGGCGGTAGAAGCCATCATCCGTCAACATT
ATTACGTCCTTACTACAGATCGTTAAAAGttcaataaaagtttgtttatc
TACTGGAGGTTTTGGGTAATCACCATCATACAATAGATCCGAACAAACTT
GGATGGCGTCATCTACGGGCACGTTGGTGTATAACGAGACAACATCGAAA
CTCACAATCTCCGCATCCTCGTCTAACTCAATTTCATCCAAACTCTCGGA
TACTTCCTT

Coding sequence (CDS) from alignment at scaffold_217:233470..233778

>TCONS_00052547 ID=TCONS_00052547|Name=TCONS_00052547|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_217:233470..233778 (Clytia hemisphaerica)
TTCGAAGGTGCTCATCCAGCCATTTGCTAACATTGGAGCTGGAGGGCTTC
CCATAGCGAGGCCGTCGGTTTGGCGGTAGAAGCCATCATCCGTCAACATT
ATTACGTCCTTACTACAGATCGTTAAAAGttcaataaaagtttgtttatc
TACTGGAGGTTTTGGGTAATCACCATCATACAATAGATCCGAACAAACTT
GGATGGCGTCATCTACGGGCACGTTGGTGTATAACGAGACAACATCGAAA
CTCACAATCTCCGCATCCTCGTCTAACTCAATTTCATCCAAACTCTCGGA
TACTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033231XLOC_033231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052547-exon-scaffold_217-1491911889:233470..233778TCONS_00052547-exon-scaffold_217-1491911889:233470..233778Clytia hemisphaericaexon
TCONS_00052547-exon-scaffold_217-1510915933:233470..233778TCONS_00052547-exon-scaffold_217-1510915933:233470..233778Clytia hemisphaericaexon
TCONS_00052547-exon-scaffold_217-1575043694:233470..233778TCONS_00052547-exon-scaffold_217-1575043694:233470..233778Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052547-proteinTCONS_00052547-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:233470..233778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77302	2.42056	1.2045	0.392806	1.91281	2.2673	0.911799	1.28042	0	0.370134	2.87409	0.236164	0	0.244918	0.805423	1.08043	0	1.09139	0	0.788906	1.71426	2.00677	0	0	0	0.339786	0	0.51892	1.18075	0.801997
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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