TCONS_00052539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052539
Unique NameTCONS_00052539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052539 ID=TCONS_00052539|Name=TCONS_00052539|organism=Clytia hemisphaerica|type=transcript|length=472bp
GAGGATTTTGAACATTGACTCTCTGTTAACACTATCAAACGCCTTTTTAA
AGTCGATGAATGTTAATACAGCTTCAACTTTATGGTTGCTGACTTCTTCT
ACAAGGCGCCGAAGGGCAAGAACTTGTGATGATGTCGAACGGGACGGacg
aaaaccattttgattgaaaCGAAGCTTTTGATCAATCTCAGGGCGAATTC
TGTTTAATATTAGTCTGTTGTAGAGTTTGGCAGCAACTTGAGTTAAACTA
ATACCGCGATAGTTGTCAACTTTGGTTAAATCGCCCTTTTTGGGCACAGG
TACAATACAGGATAGGCCCCATTCATCTGGGCGCTCACCGTTTAGAGTTG
CATTGCAGAAGTGTAGAAGAACGGTACTGAGAGAATCAAGTTTCCAGAAT
TCCAGAGGTAAACCATCAAGTCCAGCAGCTTTTCCGTTTTTCATCTGTTT
AAGTGCCTTGTTGACTTCCTCN
Run BLAST on NCBI

protein sequence of TCONS_00052539-protein

>TCONS_00052539-protein ID=TCONS_00052539-protein|Name=TCONS_00052539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
EEVNKALKQMKNGKAAGLDGLPLEFWKLDSLSTVLLHFCNATLNGERPDE
WGLSCIVPVPKKGDLTKVDNYRGISLTQVAAKLYNRLILNRIRPEIDQKL
RFNQNGFRPSRSTSSQVLALRRLVEEVSNHKVEAVLTFIDFKKAFDSVNR
ESMFKIL
Run BLAST on NCBI

transcript from alignment at scaffold_217:21436..21907

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052539 ID=TCONS_00052539|Name=TCONS_00052539|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at scaffold_217:21436..21907 (Clytia hemisphaerica)
NGAGGAAGTCAACAAGGCACTTAAACAGATGAAAAACGGAAAAGCTGCTG
GACTTGATGGTTTACCTCTGGAATTCTGGAAACTTGATTCTCTCAGTACC
GTTCTTCTACACTTCTGCAATGCAACTCTAAACGGTGAGCGCCCAGATGA
ATGGGGCCTATCCTGTATTGTACCTGTGCCCAAAAAGGGCGATTTAACCA
AAGTTGACAACTATCGCGGTATTAGTTTAACTCAAGTTGCTGCCAAACTC
TACAACAGACTAATATTAAACAGAATTCGCCCTGAGATTGATCAAAAGCT
TCGtttcaatcaaaatggttttcgtCCGTCCCGTTCGACATCATCACAAG
TTCTTGCCCTTCGGCGCCTTGTAGAAGAAGTCAGCAACCATAAAGTTGAA
GCTGTATTAACATTCATCGACTTTAAAAAGGCGTTTGATAGTGTTAACAG
AGAGTCAATGTTCAAAATCCTC

Coding sequence (CDS) from alignment at scaffold_217:21436..21907

>TCONS_00052539 ID=TCONS_00052539|Name=TCONS_00052539|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_217:21436..21907 (Clytia hemisphaerica)
GAGGAAGTCAACAAGGCACTTAAACAGATGAAAAACGGAAAAGCTGCTGG
ACTTGATGGTTTACCTCTGGAATTCTGGAAACTTGATTCTCTCAGTACCG
TTCTTCTACACTTCTGCAATGCAACTCTAAACGGTGAGCGCCCAGATGAA
TGGGGCCTATCCTGTATTGTACCTGTGCCCAAAAAGGGCGATTTAACCAA
AGTTGACAACTATCGCGGTATTAGTTTAACTCAAGTTGCTGCCAAACTCT
ACAACAGACTAATATTAAACAGAATTCGCCCTGAGATTGATCAAAAGCTT
CGtttcaatcaaaatggttttcgtCCGTCCCGTTCGACATCATCACAAGT
TCTTGCCCTTCGGCGCCTTGTAGAAGAAGTCAGCAACCATAAAGTTGAAG
CTGTATTAACATTCATCGACTTTAAAAAGGCGTTTGATAGTGTTAACAGA
GAGTCAATGTTCAAAATCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033223XLOC_033223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052539-exon-scaffold_217-1491911889:21436..21907TCONS_00052539-exon-scaffold_217-1491911889:21436..21907Clytia hemisphaericaexon
TCONS_00052539-exon-scaffold_217-1510915933:21436..21907TCONS_00052539-exon-scaffold_217-1510915933:21436..21907Clytia hemisphaericaexon
TCONS_00052539-exon-scaffold_217-1575043694:21436..21907TCONS_00052539-exon-scaffold_217-1575043694:21436..21907Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052539-proteinTCONS_00052539-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:21436..21907 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48287	1.18477	1.61722	2.2353	0.181915	0.809509	0.445228	0.372679	0.113675	1.22808	0.273336	0.17968	0.0897153	0.279511	0.0938166	0.41101	0.758744	0.158668	0	0.273565	0.566758	0.381702	0.155932	0	0.834124	1.42424	0.138354	0.34376	0.299449	0.152546
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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