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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052532 ID=TCONS_00052532|Name=TCONS_00052532|organism=Clytia hemisphaerica|type=transcript|length=2371bp
CAAAGCAAAACCAAAATGGTagccaaaattttttcaaaacaaaaaattga
tgtttttgcgAAAATTTATAACATAAGAAGCTCGAACAAGTAGGCAAGAA
AGCTCCTGCCTTTCAAACTCAACACTGAAGCAGTGTACCTTAGTAAGTTA
GTGCTACTATGGCAAAATTAAACCAACTTTATCCTCAAAAGAAGAATATA
TTCCAAGGTGGAAAGCTCAAAGAAGatggCAAAAGCTCAGAACAGTCAGC
TACATTCTTGAAAGATCTTGAGACATTGAAGAAGTTTGATTTGGATTCGA
AGTTCGGGCCATGCATAGGTATAACACGATTAGAGCGGTGGCAAAGAGCT
CACACTCACAATCTCAATCCACCTCACAGTATTCCGAAAATTTTAAAGAG
TTATGATGAAAATAATAACGAAATCCAAGAAAGCTTATGGAATGATTACG
AGTTATCATGATCAATAGGATTGCAGATAAGTTACAACTCGAATGGCATC
attcatcaaaacaataaaCCATCACActtttataatttatttgtaaataG
AAGAATTATTCTAtcgattttatttttactaaaattgtatttataatttt
gttttgtaCTAACAATTTCTATAATTCTAATTAAAAGATCCTCTAGATAT
TGAAATGTCACAAAGTCAATtcttaataaaaacaaaattgaaacgACATC
ACACAATGTCTATAGACCTTCAAAGTGTTGCAAGGATTGAAAAAACTTCC
TCGCATCATCATGTAAACATAACATAACACGTGATCAATAATAATTCTGC
AGCCCTTTTTATCGTTAACCACATTCCAAAATGTGTTTATTCCGAATCAC
TCTCACATTTAGCTGTTCTTTTCAGGAAACTCTTCATTTGTTATTGTAGT
GTACTTTTTCTTTCTACATCGAAATCCAATCACTGATTCCATAAAAGCCT
CCTCAAATAGCTTTGATAAATGGATTCTGTAAACCGTTGATTGGTTaagg
ttttctggtaaaactaaaGAATCCTGAAGCATACGATTTTGGTGAAGTGA
AGTAATGTTAGTTTCTTTTAGATTTCGGAGGCGAGTCTACATGGTATAAA
ACACTCACCATTAAAACCAATAGAGTCAGTAAAATAATTGTTAGCCAATT
ACAATCAAAAAGTCTACAAAGTACGACCGCCCAGCATAGATATCCAAGAA
AATAAAACGAGCCCATAAAACGCAACGTGATACGTGGCTTCACTTGATTG
TCGACGTCTGCCGCAGCTGTCGTTGTTTGACTGCGCGACGTCGTAGGCAT
TTTGATCGCTGATTCAGCATAATGTTCTTGTTTTAACCCTTTCTGTGAAA
TTTTACGTAAAGAGCGTCCGATAATGTCTGGACGGTTGTATAGCTCATGC
AATCGTTCGCCGtgctgaaaaagtgaaaataattcatatttattgatata
aaaattataattaaaaaaattgagaggCCGGggcaaatgaatccaacatt
tgatccaacatttgatccaacattattgttggatcaaatgttgggttcat
ttgcgcaagtcataaaattgcaactttttaagaaaattgttggaaatcat
gttggatgaagtttgatcgccgtcaaacttttcatccagcaaatgacttt
tcatgcaacttttcgaattttcCCACGGGACTTCTCGTCCAACATTTCGT
CCAACAATAAATTTGAAATGTTGGATTGAATGTTAGCgagtacctcacca
aaaaccgggatttttcatcccgtttcttacagccaattcgattgacttca
aaatatgccttttttgccctgattgccaattattttgcattcgattgaca
aaaatttggcaaatgtggcaaaatttgagtgccataaatgccaaataaaa
aagatgtggtgaatgtggcattcttggcatttttggaacttacctccgTA
TGTCTCCgtacaaaacactgttcccacgagacctgtgttcttttcgctcc
aattttgccacttttgccaaagattttgaaaaatagaagaccttccaatg
ctaaagcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCAcgagacctgtgttcttttcactccaattttgccacttt
tgccaaagattttgaaaaatagaagaccttccaatgctaaagcaaaacaa
tgccgatcggtaatttgattggttaaaaacgccgacagaaaactgctgac
taagcatcacaaaacggaaatcataatggcggcgtagcgatgtacaaatt
tgccatgaaactgtgatcttttgacattaaaattgtagatttggcaaagt
tggtgagtatggcaaatttgg Run BLAST on NCBI transcript from alignment at scaffold_217:137751..142781- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052532 ID=TCONS_00052532|Name=TCONS_00052532|organism=Clytia hemisphaerica|type=transcript|length=5031bp|location=Sequence derived from alignment at scaffold_217:137751..142781- (Clytia hemisphaerica)
CAAAGCAAAACCAAAATGGTAGCCAAAATTTTTTCAAAACAAAAAATTGA
TGTTTTTGCGAAAATTTATAACATAAGAAGCTCGAACAAGTAGGCAAGAA
AGCTCCTGCCTTTCAAACTCAACACTGAAGCAGTGTACCTTAGTAAGTTA
GTGCTACTATGGCAAAATTAAACCAACTTTATCCTCAAAAGAAGAATATA
TTCCAAGGTGGAAAGCTCAAAGAAGGTAAGCATAAGCTTAGCAGAAAACG
AAAGTGAATTTTACTATTTTTTTTTTTTGTACGTTCTCGACAATGAAGCT
AGATTAGTTCCAATTGGCCACGGACTATATTGACTCTTTAACCATTTTCT
TTTCTTTTTAGATGGCAAAAGCTCAGAACAGTCAGCTACATTCTTGAAAG
ATCTTGAGACATTGAAGAAGTTTGATTTGGATTCGAAGTTCGGGCCATGC
ATAGGTAACCTACCCGAGGCGGGATACTTGGGCAATAAGGGGTACGGGTG
TAAGGGGTTGTGCCGCTGGTCATGGTACCTTTTTCACCTCCATGAGCCAT
GAGTCCCAGGTAGGGTTGCAGGTGCATCGTTCCAACAGGGGTGCGGTGCA
GCTTATAATAATCCGTAAAAATCCTACGTGAAAAAGGTAAAACTTTAGAA
CTGCTTCAAACACCAGCCAAACATGGCAGTAGAAACAATGTGAGCGTTAG
AAGTGTATTGGTTAGAGGGCTAGAACGGCGGAAACTCATAAATAATCTCA
TAACTTTAATCTCTTAGTCTTAAGTCTTACACTTTCCAAGCTTGGGCACA
CTTATGGCCCCCCTTTTCTTTTTAGCCCTTTGACTTTTCGAATGATTTTA
ATATTTATTGATATATATGAATAAAATCATTTTTAAACAATCTTGTATTT
TATATGTAGCGAAAATGGGCCTTCGGGCCTCTAATGTTACTTGAATATAT
AGATAGATAGATAGAAACGAGGTCAATTCAATATTTGCATGTGACAGAAT
TTTGTTTTTGTTTTCCTAGGTATAACACGATTAGAGCGGTGGCAAAGAGC
TCACACTCACAATCTCAATCCACCTCACAGTATTCCGAAAATTTTAAAGA
GTTATGATGAAAATAATAACGAAATCCAAGAAAGGTATTATTGGCTCCAT
GAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAAACGTTTAGAAACCAAAATTTCATGCTCTTGAAATATTCTTTCAT
ATTCAAGACTTCGTGAGCATAAAAAGACATCTATCTCATCAAAAAATTGA
GTAATCTGGCTAAGAACATTGATGTATGCCTATTAATAGTGATTCTTATT
AGATAAAGATGCGTTTTTTGAGCTGAAAAGTTTTTTTACAAAAATCTGCT
TGACCCATCTTTTACCTATTTTCATGCAAAAAATCAGAAAAAAAGAACAA
TCCAATATTTCACAATGTCCAAAAAACCCTTTTTTTATCCGTTTTTTGGC
CCAAATTTGCCCAAAAACATTTTTTTTCGAAAATTGGGCTCCGTCACATT
CGAGGGTTTATAGTTATGCATCTTTGTGCAAAAATCGTTAAGAATGAAAG
AACCAATCTCGAGAAAAGCTAATACCTAAGCAATTGATAATGCGCTTATA
AAAAAATATCAAATTCGGCCAGTTTTTCTATAAAAACACGCCAAGCAACC
AAAATTTCATGTCTAAACACACTTATGCTCCAAAAGTAAGCCCTCGTGAG
CAAAAAAAACATCTATCTCATAAAAAAATTGAGTAATTTGAGTAAGAACA
TTGATGTATGCTTATTAATAGTGATTCTTATAGATAAACATGCGTTTTTT
AAGCCAAATAAATTTTTTTGAAAAAATCTGCTTTAGCCATCTTTTACCTA
TGATGGTACCCTACTTTCATGCAAAAAATCAGAAAAAATTAATGATCCAA
TTTTTCACAAAGTCCAAAAAACCCGTTTTTTAGCCGTTTTTTGGCCCAAA
TTTGCCCNTTTTCGAAAATCGGGCTCCGTCACATTTTGGCCACCACCGTT
TTGCACCTTTGTACCAAAAATCAAATGATTCCTATGATTCAATCTCGAGA
AAAGCTGGCAACGAACGGACGGACGAACGGACAGAGGTGAATTTATAGGA
CCTCCACCCCACCGGGGTAGGTCCAAAAGGTCAAACTTTAGAACTGCTTC
AAACACCAGCCAAACATGACAGTAGAAACAATGTGAGCGTTAGAAGTGTA
TTGGTTAGAGGGCTAGAACGGCGGAAACTCATAAATAATCTCATAACTTT
AATCTCTTAGTCTTAAGTCTTACACTTTCCAAGCTTGGGCACACTTATGG
CCCCCCTTTTCTTTTTAGCCCTTTGATTTTTAGAATGATTTTAATATTTA
TTGATATTTATGAATAAAATTATTTTTAAACAATCTTGTATTTTATATGT
AGCGAAAATGGGCCTTCGGGCCTCTAATGTTACTTAAATATATAGATAGA
TAGATAGAAACGAGGTCAATTCAATATTTGCATGTGACAGAATTTTGTTT
TTGTTTTCCTAGGTATAACACGATTAGAGCGGTGGCAAAGAGCTCACACT
CACAATCTCAATCCACCTCACAGTATTCCGAAAATTTTAAAGAGTTATGA
TGAAAATAATAACGAAATCCAAGAAAGGTATTATTGGCTCCATGAATTTG
TGTTTACATTTAAAATGTTCGTTTACGGTATGATTGTGTAAAATGATTAT
CTTTTCGATTGGAAAGAAGTTTAATAGCATACCGTCGCGAATCTAAAAAT
AGACATTGATTTTTATGTTTGACTGAAATTCAATCCCATCACCCTTTGCG
TTTATTACGATTGCACGCAAATTACACTCAATTACAAAGAAAAAGTAATA
ACTTTCACGACTTTTGAATTAAGACGAAAAGGATTGTGGGATTGAATTTC
GGTCAAATGAGAGAAGTAATAATCATGACGTTTGCCCGACGAAGCGCTAT
TGAAGTAGTTTAGCAGTAAAAAAATAGTTATGCAGTGTACGTAGTGAGTT
TAAGCCCTCTGTGAAGCATTTACTATCTTCCTTTTCCCTGTAGCTTATGG
AATGATTACGAGTTATCATGATCAATAGGATTGCAGATAAGTTACAACTC
GAATGGCATCATTCATCAAAACAATAAACCATCACACTTTTATAATTTAT
TTGTAAATAGAAGAATTATTCTATCGATTTTATTTTTACTAAAATTGTAT
TTATAATTTTGTTTTGTACTAACAATTTCTATAATTCTAATTAAAAGATC
CTCTAGATATTGAAATGTCACAAAGTCAATTCTTAATAAAAACAAAATTG
AAACGACATCACACAATGTCTATAGACCTTCAAAGTGTTGCAAGGATTGA
AAAAACTTCCTCGCATCATCATGTAAACATAACATAACACGTGATCAATA
ATAATTCTGCAGCCCTTTTTATCGTTAACCACATTCCAAAATGTGTTTAT
TCCGAATCACTCTCACATTTAGCTGTTCTTTTCAGGAAACTCTTCATTTG
TTATTGTAGTGTACTTTTTCTTTCTACATCGAAATCCAATCACTGATTCC
ATAAAAGCCTCCTCAAATAGCTTTGATAAATGGATTCTGTAAACCGTTGA
TTGGTTAAGGTTTTCTGGTAAAACTAAAGAATCCTGAAGCATACGATTTT
GGTGAAGTGAAGTAATGTTAGTTTCTTTTAGATTTCGGAGGCGAGTCTAC
ATGGTATAAAACACTCACCATTAAAACCAATAGAGTCAGTAAAATAATTG
TTAGCCAATTACAATCAAAAAGTCTACAAAGTACGACCGCCCAGCATAGA
TATCCAAGAAAATAAAACGAGCCCATAAAACGCAACGTGATACGTGGCTT
CACTTGATTGTCGACGTCTGCCGCAGCTGTCGTTGTTTGACTGCGCGACG
TCGTAGGCATTTTGATCGCTGATTCAGCATAATGTTCTTGTTTTAACCCT
TTCTGTGAAATTTTACGTAAAGAGCGTCCGATAATGTCTGGACGGTTGTA
TAGCTCATGCAATCGTTCGCCGTGCTGAAAAAGTGAAAATAATTCATATT
TATTGATATAAAAATTATAATTAAAAAAATTGAGAGGCCGGGGCAAATGA
ATCCAACATTTGATCCAACATTTGATCCAACATTATTGTTGGATCAAATG
TTGGGTTCATTTGCGCAAGTCATAAAATTGCAACTTTTTAAGAAAATTGT
TGGAAATCATGTTGGATGAAGTTTGATCGCCGTCAAACTTTTCATCCAGC
AAATGACTTTTCATGCAACTTTTCGAATTTTCCCACGGGACTTCTCGTCC
AACATTTCGTCCAACAATAAATTTGAAATGTTGGATTGAATGTTAGCGAG
TACCTCACCAAAAACCGGGATTTTTCATCCCGTTTCTTACAGCCAATTCG
ATTGACTTCAAAATATGCCTTTTTTGCCCTGATTGCCAATTATTTTGCAT
TCGATTGACAAAAATTTGGCAAATGTGGCAAAATTTGAGTGCCATAAATG
CCAAATAAAAAAGATGTGGTGAATGTGGCATTCTTGGCATTTTTGGAACT
TACCTCCGTATGTCTCCGTACAAAACACTGTTCCCACGAGACCTGTGTTC
TTTTCGCTCCAATTTTGCCACTTTTGCCAAAGATTTTGAAAAATAGAAGA
CCTTCCAATGCTAAAGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCACGAGACCTGTGTTCTTTTCACTCCAATT
TTGCCACTTTTGCCAAAGATTTTGAAAAATAGAAGACCTTCCAATGCTAA
AGCAAAACAATGCCGATCGGTAATTTGATTGGTTAAAAACGCCGACAGAA
AACTGCTGACTAAGCATCACAAAACGGAAATCATAATGGCGGCGTAGCGA
TGTACAAATTTGCCATGAAACTGTGATCTTTTGACATTAAAATTGTAGAT
TTGGCAAAGTTGGTGAGTATGGCAAATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052532-exon-scaffold_217-1575043694:142557..142781 | TCONS_00052532-exon-scaffold_217-1575043694:142557..142781 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1575043694:142328..142420 | TCONS_00052532-exon-scaffold_217-1575043694:142328..142420 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1575043694:140105..140219 | TCONS_00052532-exon-scaffold_217-1575043694:140105..140219 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1575043694:137751..139688 | TCONS_00052532-exon-scaffold_217-1575043694:137751..139688 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1510915933:142557..142781 | TCONS_00052532-exon-scaffold_217-1510915933:142557..142781 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1510915933:142328..142420 | TCONS_00052532-exon-scaffold_217-1510915933:142328..142420 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1510915933:140105..140219 | TCONS_00052532-exon-scaffold_217-1510915933:140105..140219 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1510915933:137751..139688 | TCONS_00052532-exon-scaffold_217-1510915933:137751..139688 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1491911889:142557..142781 | TCONS_00052532-exon-scaffold_217-1491911889:142557..142781 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1491911889:142328..142420 | TCONS_00052532-exon-scaffold_217-1491911889:142328..142420 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1491911889:140105..140219 | TCONS_00052532-exon-scaffold_217-1491911889:140105..140219 | Clytia hemisphaerica | exon |
| TCONS_00052532-exon-scaffold_217-1491911889:137751..139688 | TCONS_00052532-exon-scaffold_217-1491911889:137751..139688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:137751..142781 - |
Blast
The following BLAST results are available for this feature:
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