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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052527 ID=TCONS_00052527|Name=TCONS_00052527|organism=Clytia hemisphaerica|type=transcript|length=1579bp
CTAACATGCATAGCCCTCAAATgactgaccaatcaaagcagcaaaatttc
aaaacaaatgaactacgcagcttcgctcgcagctctactctaccattttt
gttttgatttaactttgtattttagggaccagacaggtcattcatttgag
ggctatgcatgttagcctccactgatgcaagttacccgacttcacggtat
agtTTCAAGGTTAAAAGATCCAGCGGGCatggttttagagtgcaattttt
aaacatggaagtTCGAATTGAGacgaaatcaaaataaatttcccagtggg
gctgaaattacaggttttttttcccaccggggacgacatttttgccaaat
tttctagtagggctggggtcccagtgggtctgtgacacaggggtgtaaaa
acGGTGAGCTCACTTGGTATTTTAATTCGTTATTCCAGATGATCTTACAT
TTCAGACTTTTTAGTACAAAATGAAAGACGAAGCAGCCACAAATAACAAA
TGTCAAGCTTGGACGAAACTTATTTTCAACCTGATCATTTTTATTCTTCT
CATCATTTCAATGACAACAAAACCATGGGGTGTTTTAAAGATCGAATCAA
GTGATAAAGAAATCGGTAATTTCGGATTATGGCGAGCATGTAAAATGGGG
AAATCGGATACGGGAAAAGTATGTGACGATATATCAGATGGTAATTTCAC
AGTATTTGCTTACAAGTCCAACCCGTCTGACATCGACGTTAAATTCGGCA
ACACAATCGAAAAATTGTGCATTGAATTCCGAAATGAAACCGTTTTGAAA
AATGGTACAAACACGACAGAGTTACAACCTTACAATAAATGTATTACTGA
AAGATTCTATCAAAAGGTTGAAGTGGAGAGACTTCGTGTATTCATTATTC
TTGCCACCGTCGTCTCATTTCTTGTAACCTTTGGCCACATCTTTGGTATG
TACAAAGGTCAATCAAATGATTTTGTACCTGCGGTGGCATCATTGTTGAT
TCCATTATGGCTCATTATCGGGCTTTCCGTATTCCTTGGATTTTACGGTG
GTGACCATTTCCAGCTTGTAATGCTTGAATATGGATGGTCCATGATTTTA
GCCTGGATCTGTGCTGTTTTGAGCTTATTAAACACGTTATATATGATGTA
CACAGCTTTTACGTCCGAGATATAAAGGAAGATCAATCTTATTCTTATAA
TCATTACAGGCTATAACTATAGCTTTCGGTATTATTTTCTGTTACATAAA
TTGCAACTTTATGTTGGTAAATATTGGTGACAGGAGGTGGAAtgtgaaaa
acgttttttagcatttaaaggacaacaatcaatcaatataaaattgaatt
ttttaacaTATCATTTGTAGAAATAGCAAAGCTGTACTTATTCTtagatt
tcaatgaatgtaataccTTTCCTCTACAATAAAAGtcataatattaatat
ttttttcaaatatgctttgctaaattttaaaaaccacaTGATTTTAAGTG
CTCTAAATTACTTCTGGAATGTAGAGTTTCAATGTTCCAATAAGGttaag
aatatagcctggaaaccACTAAGTCCCCC Run BLAST on NCBI transcript from alignment at scaffold_217:37789..39367- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052527 ID=TCONS_00052527|Name=TCONS_00052527|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at scaffold_217:37789..39367- (Clytia hemisphaerica)
CTAACATGCATAGCCCTCAAATGACTGACCAATCAAAGCAGCAAAATTTC
AAAACAAATGAACTACGCAGCTTCGCTCGCAGCTCTACTCTACCATTTTT
GTTTTGATTTAACTTTGTATTTTAGGGACCAGACAGGTCATTCATTTGAG
GGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCGACTTCACGGTAT
AGTTTCAAGGTTAAAAGATCCAGCGGGCATGGTTTTAGAGTGCAATTTTT
AAACATGGAAGTTCGAATTGAGACGAAATCAAAATAAATTTCCCAGTGGG
GCTGAAATTACAGGTTTTTTTTCCCACCGGGGACGACATTTTTGCCAAAT
TTTCTAGTAGGGCTGGGGTCCCAGTGGGTCTGTGACACAGGGGTGTAAAA
ACGGTGAGCTCACTTGGTATTTTAATTCGTTATTCCAGATGATCTTACAT
TTCAGACTTTTTAGTACAAAATGAAAGACGAAGCAGCCACAAATAACAAA
TGTCAAGCTTGGACGAAACTTATTTTCAACCTGATCATTTTTATTCTTCT
CATCATTTCAATGACAACAAAACCATGGGGTGTTTTAAAGATCGAATCAA
GTGATAAAGAAATCGGTAATTTCGGATTATGGCGAGCATGTAAAATGGGG
AAATCGGATACGGGAAAAGTATGTGACGATATATCAGATGGTAATTTCAC
AGTATTTGCTTACAAGTCCAACCCGTCTGACATCGACGTTAAATTCGGCA
ACACAATCGAAAAATTGTGCATTGAATTCCGAAATGAAACCGTTTTGAAA
AATGGTACAAACACGACAGAGTTACAACCTTACAATAAATGTATTACTGA
AAGATTCTATCAAAAGGTTGAAGTGGAGAGACTTCGTGTATTCATTATTC
TTGCCACCGTCGTCTCATTTCTTGTAACCTTTGGCCACATCTTTGGTATG
TACAAAGGTCAATCAAATGATTTTGTACCTGCGGTGGCATCATTGTTGAT
TCCATTATGGCTCATTATCGGGCTTTCCGTATTCCTTGGATTTTACGGTG
GTGACCATTTCCAGCTTGTAATGCTTGAATATGGATGGTCCATGATTTTA
GCCTGGATCTGTGCTGTTTTGAGCTTATTAAACACGTTATATATGATGTA
CACAGCTTTTACGTCCGAGATATAAAGGAAGATCAATCTTATTCTTATAA
TCATTACAGGCTATAACTATAGCTTTCGGTATTATTTTCTGTTACATAAA
TTGCAACTTTATGTTGGTAAATATTGGTGACAGGAGGTGGAATGTGAAAA
ACGTTTTTTAGCATTTAAAGGACAACAATCAATCAATATAAAATTGAATT
TTTTAACATATCATTTGTAGAAATAGCAAAGCTGTACTTATTCTTAGATT
TCAATGAATGTAATACCTTTCCTCTACAATAAAAGTCATAATATTAATAT
TTTTTTCAAATATGCTTTGCTAAATTTTAAAAACCACATGATTTTAAGTG
CTCTAAATTACTTCTGGAATGTAGAGTTTCAATGTTCCAATAAGGTTAAG
AATATAGCCTGGAAACCACTAAGTCCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052527-exon-scaffold_217-1575043694:37789..39367 | TCONS_00052527-exon-scaffold_217-1575043694:37789..39367 | Clytia hemisphaerica | exon |
| TCONS_00052527-exon-scaffold_217-1510915933:37789..39367 | TCONS_00052527-exon-scaffold_217-1510915933:37789..39367 | Clytia hemisphaerica | exon |
| TCONS_00052527-exon-scaffold_217-1491911889:37789..39367 | TCONS_00052527-exon-scaffold_217-1491911889:37789..39367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:37789..39367 - |
Blast
The following BLAST results are available for this feature:
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