|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052524 ID=TCONS_00052524|Name=TCONS_00052524|organism=Clytia hemisphaerica|type=transcript|length=205bp
TTCTTGATGTTGGAGCGTATCTTTATAAATTGCAGTTGAACCCTTCATTA
AAAGAACTAGTCCTTGCAAATGAATCacaattgaagaaaaatatGTCGAA
CGTACATACTGAGttgtTTCCGAAAATCAAAGTGGATTATGACTTCATCG
AAGTGAAGAACAACACATACTTGAAACTTTCAAGTAGAGCATTTGTCGAT
TGTCC Run BLAST on NCBI transcript from alignment at scaffold_217:278939..281415+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052524 ID=TCONS_00052524|Name=TCONS_00052524|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at scaffold_217:278939..281415+ (Clytia hemisphaerica)
TTCTTGATGTTGGAGCGTATCTTTATAAATTGCAGTTGAACCCTTCATTA
AAAGAACTAGTCCTTGCAAATGAATCacaattgaagaaaaatatGTCGAA
CGTACATACTGAGGTAAGTGTTTAGACTTGTACGTCGTAGGACTGTGTGG
TACATCATTAAACCTTACAAAAGACCGTAAACATTAGGaactttttattg
aaagaattttttaaagtttcattttCTGAAGTGCCTCTAAGAAATACAAA
TGGCAAAGAAATATGGTACTTTGAAAGGTTTGTGCAAAACGAGGAAGGCC
GCTTAGTAGGCCAATAGCCCGTATGATAGCCCGtcgtttttatgagactt
tgtattGAAANactcaaaagaccgttagaccgtaaatattgcaaaaggaa
tctgagaaattcgaacgagaactttatatatttgcaatatttttctgaaa
tctaagaaggccgcctagtaggccaatAGCCCGTATGATAGCCCGtcgtt
tttatgagactttgtattGAAAAGACCATTAGGCCGTCGATTTTGCAAAA
TGGTTCTGAAAAATTCCAAcgagaactttatatatttgcaatatttttct
gaaatctaagaaggccgcctagtaggccattagaccgtatgataggccgt
catttttatgagactttgtactcaaaagaccgttagaccgtcaatattAT
AAAGGGAATCTGAGAAATGGAACaagaactttatatatttgcaatatttt
tctgaaatcgaagcaggccgcctagtaggccatcggaccgtatgataggc
cgtcatttttatgagaatttgtactcaaaagaccgttagaccatcaatat
tgcaaaaggaatctgagaaattcgaacgagaactttatatatttgcaata
tttttctgaaatcgaagaaggccgcctagtaggccattagaccgtatgat
aggccgtcatttttatgagactttgtactcaaaagaccgttaggcCGTCA
atattacaaaaggaatctgagaaattcgaacgagaactttatatatttAN
atatttgcaatatttttctgaaatcgaagaaggccgcctagtaggccatt
agaccgtatgataggccgtcatttttatgagactttgtactcaaaagacc
gttaggccgtaaatattgcaaaaggaatctgagatattcgaacgaaaact
ttatatatttgcaatatttttctgaaatcgaagaaggccgcctagtaggc
cattagaccgtatgataggccgtcatTTTTATGAGACTTTGTACTCAAAA
GACCGTTAGACCGTAAATATTGCAaaaggaatctgagaaatttgaacgaa
aactttatatatttgcaatatttttctgaaatcgaagaaggccgcctaat
aggccattagaccgtatgataggccgtcatttttatgagactttgtactc
aaaagaccgttggACCGTCAATATTGCAaaaggaatctgagaaatttgaa
cgaaaactttatatatttgcaatatttttctgaaatcgaagaaggccgcc
tagtaggccattagtccgtatgataggccgttaTTTTTATGAGACtattc
aaaagaccgttagaccgtcaatattATAAAGgaaatctgagaaattcgaa
cgacaactttatatatttgcaatatttttctgaaatcgaagtaggccgcc
tagtaggccattagaccgtatgataggccgtcatttttatgagactttgt
actcaaaaaagaccgttagaccgtcaatattacaaggggaatctgagaaa
ttcgaacgaaaaatttatatatttgcaatatttttctaaaatcgaagaaa
gccgcctagtaggccattagaccgtatgataggccgtcatttttatgagc
ctttgtactcaaaagaccgttagaccgtcaatattacaaggggaatctga
gaaattcgaacgagaactttttatatttgcaatatttttctgaaatcgaa
gaaggccgcctagtaggccattagaccgtatgataggccgtcatttttat
gagactttgtactcaaaagacNgataggccgtcatttttatgagactttg
tactcaaaagaccgttaggcCATCGATTTTGCAAAGTGGTTCTGAGAAAT
TACAAACGAGAACTTtataattttgaaagatttttctgCAATCGAAGGAG
GCCGcttagtaggccattagaccatATGATAGACCGTCGTTTTTAAGAGA
CCTTGTATGCAGGAGACCTTTGGACCGTCAAAATTACAAAGTGAGTCCGA
GAAATCAAAATGAGAACTTTAAGATTTTTCTAATTCAAGAAGATCTTAGT
ATGCCACAATGATCTTGattatgttttattttcagttgtTTCCGAAAATC
AAAGTGGATTATGACTTCATCGAAGTGAAGAACAACACATACTTGAAACT
TTCAAGTAGAGCATTTGTCGATTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052524-exon-scaffold_217-1491911889:278939..279051 | TCONS_00052524-exon-scaffold_217-1491911889:278939..279051 | Clytia hemisphaerica | exon |
| TCONS_00052524-exon-scaffold_217-1510915933:278939..279051 | TCONS_00052524-exon-scaffold_217-1510915933:278939..279051 | Clytia hemisphaerica | exon |
| TCONS_00052524-exon-scaffold_217-1575043694:278939..279051 | TCONS_00052524-exon-scaffold_217-1575043694:278939..279051 | Clytia hemisphaerica | exon |
| TCONS_00052524-exon-scaffold_217-1491911889:281324..281415 | TCONS_00052524-exon-scaffold_217-1491911889:281324..281415 | Clytia hemisphaerica | exon |
| TCONS_00052524-exon-scaffold_217-1510915933:281324..281415 | TCONS_00052524-exon-scaffold_217-1510915933:281324..281415 | Clytia hemisphaerica | exon |
| TCONS_00052524-exon-scaffold_217-1575043694:281324..281415 | TCONS_00052524-exon-scaffold_217-1575043694:281324..281415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:278939..281415 + |
Blast
The following BLAST results are available for this feature:
|
