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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052490 ID=TCONS_00052490|Name=TCONS_00052490|organism=Clytia hemisphaerica|type=transcript|length=1699bpRun BLAST on NCBI protein sequence of TCONS_00052490-protein >TCONS_00052490-protein ID=TCONS_00052490-protein|Name=TCONS_00052490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MSCFTCTSKFSWRKREHGCPNCGKAFCKDCLNYTASVKRLGGKQTNVCVDRun BLAST on NCBI transcript from alignment at scaffold_215:54669..67754- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052490 ID=TCONS_00052490|Name=TCONS_00052490|organism=Clytia hemisphaerica|type=transcript|length=13086bp|location=Sequence derived from alignment at scaffold_215:54669..67754- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_215:54669..67754- >TCONS_00052490 ID=TCONS_00052490|Name=TCONS_00052490|organism=Clytia hemisphaerica|type=CDS|length=10650bp|location=Sequence derived from alignment at scaffold_215:54669..67754- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052490 vs. Swiss-Prot (Human)
Match: ANCHR (Abscission/NoCut checkpoint regulator OS=Homo sapiens GN=ZFYVE19 PE=1 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 3.506e-36 Identity = 124/429 (28.90%), Postives = 188/429 (43.82%), Query Frame = 1
Query: 106 CFTCTSKFSWRKREHGCPNCGKAFCKDCLNYTASVKRLGGKQTNVCVDCHKKLNVKTVQQKPGQASASTTGYSQANVSS-DDPNVYLGPSMKDVADKKSKQQKKHGLSKDISENDK--------------------DAAIXXXXXXXXXXXXHSKPVTDSDLHQRFNNLAGRQAASSSANKGNILQPQP------RLTEEEQMLQLMKETQDEVKLDDRFD---------------------------------------ESQVGTREKLSKD--IQNMEDRFYKLKDQDPDXXXXXXXXXXXXQYNDSSEDEDEAMKKILRKALAESLLDDKVREAGHGDVIAKAKISSNKPTTSLGGAPVEEDD---------DELPWCCICNNDATIRCHDCDNDLYCKRCFREGHDDFDMKNHRKSTYQKPKKKQ 1161
C+ C KF+ K+E+GC NCG+AFC CL+++A+V R G Q VC CH+ L T S AN S P Y K VA ++KQ+ S+ ++ D+ A I+ RL LK++++ S P T ++ R L GR S + PQP T+ +Q L+ + EV +D+ + E+ + RE+ ++ I + R L+ QDP+ V + RL + ++ E A++++L++ E+ LD EA ++ A+ +++P T GA E D +ELPWCCICN DAT+RC CD DL+C RCFREGHD F++K H+ S Y P+ Q
Sbjct: 80 CYGCAVKFTLFKKEYGCKNCGRAFCSGCLSFSAAVPRTGNTQQKVCKQCHEVL----------------TRGSSANASKWSPPQNY----KKRVAALEAKQKPSTSQSQGLTRQDQMIAERLARLRQENKPKLVPSQAEIEARLAALKDERQGSIPSTQ-EMEARLAALQGRVLPSQT--------PQPAHHTPDTRTQAQQTQDLLTQLAAEVAIDESWKGGGPAASLQNDLNQGGPGSTNSKRQANWSLEEEKSRLLAEAALELREENTRQERILALAKRLAMLRGQDPERVTLQDYRLPDSDDDEDEET---AIQRVLQQLTEEASLD----EASGFNIPAE---QASRPWTQPRGAEPEAQDVDPRPEAEEEELPWCCICNEDATLRCAGCDGDLFCARCFREGHDAFELKEHQTSAYSPPRAGQ 469 The following BLAST results are available for this feature:
BLAST of TCONS_00052490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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