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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052488 ID=TCONS_00052488|Name=TCONS_00052488|organism=Clytia hemisphaerica|type=transcript|length=983bp
CAAGGATAGAGAGAAGTATACAGACAAGTGAAGTTATTCCGCAACCTTCA
TCAATTTATTCTCGCAATaTGTCAGAACAAACAAGAAAATTGGGCTTTGG
TGAAAGAGCCCATGCCGATCGAAAGAAAATATACAATATAGTAATTCCAA
CATTATTGAAAACTAGATGTCAAATTGATACTCATCTACTTGATCAAGCT
GTCTACAAAGTCATCAAATCTCAGCCCAACCTCAGCGCTGTTTTAAGGTT
CGAGGGAGAAGATATATACTTCAAACCTTTAAAAGAGATAGAACAGTATT
TTGAAGTGTTACCAAAAGATGCTAATTGGAAAGACGTTTGCATAGAATAC
AATAATAAACATTTGAGAGCAGATTTTGAAACTTATCCACCTTTTAAATT
GATGTTGATTCAACCTTGTAATGAAGAAGCTGTGGTCATAGCTGTTGCAA
GTCATTACTGTGTGGATGGGACTGGAATTACTGCTATAACTAGTCTCATT
TTAGAGACTTATTCAGAGCTTCAAAAAGATGCCAACTACGAACCAATGAA
ATATCCAGCTCCAAGATCTTTTGAAGATTATCGACTGGAATTTTTTGGTT
CCGAAGAAAAGTTTTGTGAACAACAGAAGCGTTTTAAAGAGTTTCATTTG
AACGTTATGGATTCTGCAAattgttattttgaatttgaagagaATGATCG
AGTAGTGTTTACACCATATTCAAGCACTGAGATCGAATTTGAGAATTTCA
AGAAAGAATGTAAAGCAAAGGGAATTACTGTTGGAGCTGCTTTATGTGGA
GTTCAAGCATGTGCTATGGCTGCTTGCatgtttaaaaatcaaaaagatgt
CCCTGATGTTGTCAACTTGCTGATTGAAATCCCTATAAATTTACGTGGTC
GAATCACTAAAGAAGTTTCTTGGAAGTGCGCTAACTACATGCCGTCCAAT
CCTTATATCACCGTCAAAATAGGTAGAAGTTCG Run BLAST on NCBI protein sequence of TCONS_00052488-protein >TCONS_00052488-protein ID=TCONS_00052488-protein|Name=TCONS_00052488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
RIERSIQTSEVIPQPSSIYSRNMSEQTRKLGFGERAHADRKKIYNIVIPT
LLKTRCQIDTHLLDQAVYKVIKSQPNLSAVLRFEGEDIYFKPLKEIEQYF
EVLPKDANWKDVCIEYNNKHLRADFETYPPFKLMLIQPCNEEAVVIAVAS
HYCVDGTGITAITSLILETYSELQKDANYEPMKYPAPRSFEDYRLEFFGS
EEKFCEQQKRFKEFHLNVMDSANCYFEFEENDRVVFTPYSSTEIEFENFK
KECKAKGITVGAALCGVQACAMAACMFKNQKDVPDVVNLLIEIPINLRGR
ITKEVSWKCANYMPSNPYITVKIGRSS Run BLAST on NCBI transcript from alignment at scaffold_215:41103..45161- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052488 ID=TCONS_00052488|Name=TCONS_00052488|organism=Clytia hemisphaerica|type=transcript|length=4059bp|location=Sequence derived from alignment at scaffold_215:41103..45161- (Clytia hemisphaerica)
CAAGGATAGAGAGAAGTATACAGACAAGTGAAGTTATTCCGCAACCTTCA
TCAATTTATTCTCGCAATGTAAGTGTAACTCTTTTTCTTGTAATACTAGG
AGCTGGTTTTGTTAAAGATTACCTACTCTCGGGTACCTAATAGCCGGGGG
GTTTGGAATAAGCAGGGGGGTTGGAAAAAATCTCAAAATTTAATAAGCGG
GGGGGGGTGGAATAAAAATGTCCTGGGTGGAAAATGTTCGAAAAGGACGC
TGATACAGCAGAATTAGGGCAAAAGAGGGAACTTTCAAAAAAAATTTTCC
CAAAAATCAATAAGCGGGGGGGTTGGAATAAGAATGTCCTGGGTGGAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCGAGAGTAAGTGG
ATAAATTTTGGTAGGGATTAAATTTGGCGAATTTTGTTAAAATTCTCAAA
ATTAAATCATCGCCAAAATTTCCAAATTCGGCAATTCGCCAAATTTTTCG
AAATTTCCCTTTGGCAAATTAAATCCCCGCCAAAATTAAAGGAAAATCAA
GTTTTTTTTTACGAGAAATTTCAGAAAACTATTTTTGCCTTTTAAGCCGA
TCGTGTATTAACCGTATACATTTTAACAAACTATTTTTACCTTTATAACC
AATCTTATGTTACACGTATTATTTTTTCTATTCTGAGCTTCAACAAAATA
CCTTAACAAAAAACACTTTTTTGTCCTTCACCAAATTAAATCCCCGCCAA
AAATCACGTTTTGGTTATTCGCCAAATTAAATCCACGCCAAAATTTATCC
ACTTAAGGTGGCCATCCACTGGAAATTGAAAAATCGACCTTTTAACTTTA
AATGTTGATTACTCAATAACTAAAAATGATATGGGCTTGAAACTTCCAGG
TATTATTATTTATGAGTTAAAGTTAATATTAAAAAAAAAAAATTTAAAAA
AAAATTGGAAGACGGGGGGTTTGGTACGACTTTTCAGAAAAATCAAAATA
ATCTTGTGTCAACGTTTTAGAGAAAACTACAAATACTTGGTTAATGATTT
TTGGTACGTAGAGGCACTTTAGGACAAAGAATGGAATGAGCGAAATTTTT
TTTTGAAAAATTCAAAATCCGGGGGTAAAAGCCAAAAAAACAGTTTTTTC
AAAATATGAGATCTGGAATTGTGAAATCTGAAAAATCCTTCGCTCATTCC
ACAGCCCTCATAGATGTGCAAATACCCTGAAAAAATCAGACCAATCGGAC
AACTAGATCCTGAGATTTTTCCGCCACAGTGATTGGGAACCCCCGGATTT
GCGTTTTGAGAAATCGTGCTTTAAAACATAAATTGCGGTTAAATGAAAAG
ATTATAGTTTTCAATAGGGATTTTTTTATGATTTGAGCCTGTAAGGGAGT
TTTCTACATTATTTCAAAGGAAATAAGGATTTAAAACTATTTACAGTGAA
AATTTTGGCCAATTTGAGTGACATTTTGATCATTTCCAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCATTAAAATAGCACCCAAAAAAGAAT
AAACAAGCAAACAAAAGTTCTACATACCTTTGGCGCACTACACAACAACC
GACCGTGCTCTTAATCAAAAGAAATAACAAGTTACATCATGATTAAATAT
TCCTTAGAGTTTTACAAACCTCCTTGTATAATGAGAGAACCATAAAACAT
CATTTACAGCAACAAATGTGGATGAAACACTCAGCAAAAGTCAGTGAGCT
TCATCCTCCAAAATTGTCCAAAAACCATCTTTAAAATTCGAGGGCGGTCA
TTGTTTACAAAGTTTGAAAACTGAATATAGGTACACCAAGCGACTTCAAA
CCTTCTAGAAATGTTTCTAGCGACTTGAAGACGACCCGTAAAGATTTTCA
AGCTGTTTGAGCAGCTAGAGAAGGTAGAATTGCTGTTTTACTAACGGGCG
GGAAACAGGGCGTCCATGGGCGAAGCATTAAAAGCTTAAAGGTAGGTATT
TTAAAACCTAAAATTGTCTGCTTATTCTTTACATTTATGAATTGAAATTT
TCAGAGGTTGTTGTTCCAGAGAAGTTATACTTGACTTTAAGCCAAAAAAA
TAAAAAACCACCAAAAAAGTATCACTATTTTCAAACTCAGTGGATGGCCA
CCTTAAGGTATTTCGTAGAGAACTAACTTTTGTCAAAGTTCATTCTGCAC
TCATCTCCCCTTTGATTTATTTACTCTATCTGATCATGAAATTTATTAAG
TTCAGATGGAGGGTTTCGGAAATCCCATGTACACCATTTATTGAACCAAA
TTTTGTTTTGAATTAGATTCTTTATATTAGACTATTTCGACATTGTCAAC
ATTTTAAAAACCTCTTCTTTGAGTTTGAATTTCTTAAAAGTTGAATTAAT
GTTGTCAGCGATCATTTCGATCAATTATCCAAAACCACTTTTCAGATTTT
CTTTGTTCTCGTTAAAATTAAATTATATAAGGATAGGACAGGTAGAGCCT
CGACAATCCCATCATCCATTAATTCCCCTTAAAACATCCGAACATTGTTT
ATAGGAGGATTTTGAGTCATTGTTTATTTTTTTATAATTTTCAGATGTCA
GAACAAACAAGAAAATTGGGCTTTGGTGAAAGAGCCCATGCCGATCGAAA
GAAAATATACAATATAGTAATTCCAACATTATTGAAAACTAGATGTCAAA
TTGATACTCATCTACTTGATCAAGCTGTCTACAAAGTCATCAAATCTCAG
CCCAACCTCAGCGCTGTTTTAAGGTTCGAGGGAGAAGATATATACTTCAA
ACCTTTAAAAGAGATAGAACAGTATTTTGAAGTGTTACCAAAAGATGCTA
ATTGGAAAGACGTTTGCATAGAATACAATAATAAACATTTGAGAGCAGAT
TTTGAAACTTATCCACCTTTTAAATTGATGTTGATTCAACCTTGTAATGA
AGAAGCTGTGGTCATAGCTGTTGCAAGTCATTACTGTGTGGATGGGACTG
GAATTACTGCTATAACTAGTCTCATTTTAGAGACTTATTCAGAGCTTCAA
AAAGATGCCAACTACGAACCAATGAAATATCCAGCTCCAAGATCTTTTGA
AGATTATCGACTGGAATTTTTTGGTTCCGAAGAAAAGTTTTGTGAACAAC
AGAAGCGTTTTAAAGAGTTTCATTTGAACGTTATGGATTCTGCAAATTGT
TATTTTGAATTTGAAGAGAATGATCGAGTAGTGTTTACACCATATTCAAG
CACTGAGATCGAATTTGAGAATTTCAAGAAAGAATGTAAAGCAAAGGGAA
TTACTGTTGGAGCTGCTTTATGTGGAGTTCAAGCATGTGCTATGGCTGCT
TGCATGTTTAAAAATCAAAAAGATGTCCCTGATGTTGTCAACTTGCTGAT
TGAAATCCCTATAAATTTACGTGGTCGAATCACTAAAGAAGTTTCTTGGA
AGTGCGCTAACTACATGCCGTCCAATCCTTATATCACCGTCAAAATAGGT
AGAAGTTCG Coding sequence (CDS) from alignment at scaffold_215:41103..45161- >TCONS_00052488 ID=TCONS_00052488|Name=TCONS_00052488|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_215:41103..45161- (Clytia hemisphaerica)
ATGTCAGAACAAACAAGAAAATTGGGCTTTGGTGAAAGAGCCCATGCCGA
TCGAAAGAAAATATACAATATAGTAATTCCAACATTATTGAAAACTAGAT
GTCAAATTGATACTCATCTACTTGATCAAGCTGTCTACAAAGTCATCAAA
TCTCAGCCCAACCTCAGCGCTGTTTTAAGGTTCGAGGGAGAAGATATATA
CTTCAAACCTTTAAAAGAGATAGAACAGTATTTTGAAGTGTTACCAAAAG
ATGCTAATTGGAAAGACGTTTGCATAGAATACAATAATAAACATTTGAGA
GCAGATTTTGAAACTTATCCACCTTTTAAATTGATGTTGATTCAACCTTG
TAATGAAGAAGCTGTGGTCATAGCTGTTGCAAGTCATTACTGTGTGGATG
GGACTGGAATTACTGCTATAACTAGTCTCATTTTAGAGACTTATTCAGAG
CTTCAAAAAGATGCCAACTACGAACCAATGAAATATCCAGCTCCAAGATC
TTTTGAAGATTATCGACTGGAATTTTTTGGTTCCGAAGAAAAGTTTTGTG
AACAACAGAAGCGTTTTAAAGAGTTTCATTTGAACGTTATGGATTCTGCA
AATTGTTATTTTGAATTTGAAGAGAATGATCGAGTAGTGTTTACACCATA
TTCAAGCACTGAGATCGAATTTGAGAATTTCAAGAAAGAATGTAAAGCAA
AGGGAATTACTGTTGGAGCTGCTTTATGTGGAGTTCAAGCATGTGCTATG
GCTGCTTGCATGTTTAAAAATCAAAAAGATGTCCCTGATGTTGTCAACTT
GCTGATTGAAATCCCTATAAATTTACGTGGTCGAATCACTAAAGAAGTTT
CTTGGAAGTGCGCTAACTACATGCCGTCCAATCCTTATATCACCGTCAAA
ATAGGTAGAAGTTCGAGGATAGAGAGAAGTATACAGACAAGTGAAGTTAT
TCCGCAACCTTCATCAATTTATTCTCGCAATATGTCAGAACAAACAAGAA
AATTGGGCTTTGGTGAAAGAGCCCATGCCGATCGAAAGAAAATATACAAT
ATAGTAATTCCAACATTATTGAAAACTAGATGTCAAATTGATACTCATCT
ACTTGATCAAGCTGTCTACAAAGTCATCAAATCTCAGCCCAACCTCAGCG
CTGTTTTAAGGTTCGAGGGAGAAGATATATACTTCAAACCTTTAAAAGAG
ATAGAACAGTATTTTGAAGTGTTACCAAAAGATGCTAATTGGAAAGACGT
TTGCATAGAATACAATAATAAACATTTGAGAGCAGATTTTGAAACTTATC
CACCTTTTAAATTGATGTTGATTCAACCTTGTAATGAAGAAGCTGTGGTC
ATAGCTGTTGCAAGTCATTACTGTGTGGATGGGACTGGAATTACTGCTAT
AACTAGTCTCATTTTAGAGACTTATTCAGAGCTTCAAAAAGATGCCAACT
ACGAACCAATGAAATATCCAGCTCCAAGATCTTTTGAAGATTATCGACTG
GAATTTTTTGGTTCCGAAGAAAAGTTTTGTGAACAACAGAAGCGTTTTAA
AGAGTTTCATTTGAACGTTATGGATTCTGCAAATTGTTATTTTGAATTTG
AAGAGAATGATCGAGTAGTGTTTACACCATATTCAAGCACTGAGATCGAA
TTTGAGAATTTCAAGAAAGAATGTAAAGCAAAGGGAATTACTGTTGGAGC
TGCTTTATGTGGAGTTCAAGCATGTGCTATGGCTGCTTGCATGTTTAAAA
ATCAAAAAGATGTCCCTGATGTTGTCAACTTGCTGATTGAAATCCCTATA
AATTTACGTGGTCGAATCACTAAAGAAGTTTCTTGGAAGTGCGCTAACTA
CATGCCGTCCAATCCTTATATCACCGTCAAAATAGGTAGAAGTTCGAGGA
TAGAGAGAAGTATACAGACAAGTGAAGTTATTCCGCAACCTTCATCAATT
TATTCTCGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052488-exon-scaffold_215-1575043694:45094..45161 | TCONS_00052488-exon-scaffold_215-1575043694:45094..45161 | Clytia hemisphaerica | exon |
| TCONS_00052488-exon-scaffold_215-1575043694:41103..42017 | TCONS_00052488-exon-scaffold_215-1575043694:41103..42017 | Clytia hemisphaerica | exon |
| TCONS_00052488-exon-scaffold_215-1510915933:45094..45161 | TCONS_00052488-exon-scaffold_215-1510915933:45094..45161 | Clytia hemisphaerica | exon |
| TCONS_00052488-exon-scaffold_215-1510915933:41103..42017 | TCONS_00052488-exon-scaffold_215-1510915933:41103..42017 | Clytia hemisphaerica | exon |
| TCONS_00052488-exon-scaffold_215-1491911889:45094..45161 | TCONS_00052488-exon-scaffold_215-1491911889:45094..45161 | Clytia hemisphaerica | exon |
| TCONS_00052488-exon-scaffold_215-1491911889:41103..42017 | TCONS_00052488-exon-scaffold_215-1491911889:41103..42017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_215 | supercontig | scaffold_215:41103..45161 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001242 | Condensatn |
Blast
The following BLAST results are available for this feature:
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