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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052438 ID=TCONS_00052438|Name=TCONS_00052438|organism=Clytia hemisphaerica|type=transcript|length=1346bp
TTCCTGACCTAAATCCATGTTGGTTGCTGTTGTAGAGGTTGTTTCTTTCC
AGATGATCTTGCAAATTTTTTCttacaatcttttcaaaaaatttagtgaC
GTGTGATGTAAGAGTGACAGGGCGATAGTTTTCAGCCAACCCTtgatttc
cttttttgaaaataggggTGATGTAACTTGTTTTCAGTATCTTTGGAGTG
AATCCTTTGTCAAGAATGTTCTGCCATATCAATCTGAGTGGTTTTGCAAG
CTGTGATTTGTTTTTGAGTAGAAATATAGCTGGAAAGCCATCTGGGCCAG
CAGCTGAGTTTAAAGAGAGGGTTTGTATCTCTCTAATAAAGTCGTCCTCT
GTGAGGTCAAAATAATCAAGTTTCTCCGTAACTTGCAAAGGATTGAGATC
AGGATTTTCATATTATGATTTTGGTGGTGTGAATACAGATTTATATTGAT
CTTGAAGTATATTGGCCATCTGAAGGTTATTGTCTGTTAGCTTATTTGTG
ATGGGATCTAATAATAATGGTCCCACTTTAGGTTTggttttagaaaatct
ttttgcgTAAGAGTAGAAGAATTTGGGGTTCACTTTGATTTTGGAGATTG
CATCTAGCTCTTGGTTGTACCTTTCGTTGGCATAGCTGCTTTGTAATTTT
AGTTGGATATCGATCAATCTTGACTTTGTGTTCTTGTTGAGCTGTCTTTT
CttcagtttctttctttttcgcataaGAATTTGACGATCGCGTGgaataa
ttgttttctttatgtGTTTTCGTAAAGGAATGTTGCTTTTGGTGATAACA
TCaatatcttttcctttacaacaatacaatgctgacaagttgacacaaca
aatgtgtacatgtacattgacaagtaatcccttagagaagtttttataga
aatctgcaacaaaaacgaaagtggtctcttctactgattgcttcccagcg
ctccttcccagctgtttatcaaatttccaccaatgaggttgtcGCATTTC
Aaacccttctttttggcacccctggcctttcagtgccttgcacgacgggc
ggctgtaaaataccacccttcatatatttgtttcaatccgtgatccatgg
cttaggttttttctcactTTCAATTTACtaaagaaagcgggaatttgatg
caagagttagattgtcaacaaagtgccgtaaaaaatcattgaataaaaga
agaacttaaaatcataaatattttcattttgaagaataggtgcaaaaaag
tgaaaaaatagaaaagtttcattttttattgcattaatcgaaatggggga
tttggaaaattttctatgattagttttttgcacaaacccctgtaac Run BLAST on NCBI protein sequence of TCONS_00052438-protein >TCONS_00052438-protein ID=TCONS_00052438-protein|Name=TCONS_00052438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MRQPHWWKFDKQLGRSAGKQSVEETTFVFVADFYKNFSKGLLVNVHVHIC
CVNLSALYCCKGKDIDVITKSNIPLRKHIKKTIIPRDRQILMRKRKKLKK
RQLNKNTKSRLIDIQLKLQSSYANERYNQELDAISKIKVNPKFFYSYAKR
FSKTKPKVGPLLLDPITNKLTDNNLQMANILQDQYKSVFTPPKS Run BLAST on NCBI transcript from alignment at scaffold_213:1346486..1347831 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052438 ID=TCONS_00052438|Name=TCONS_00052438|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at scaffold_213:1346486..1347831 (Clytia hemisphaerica)
gttacaggggtttgtgcaaaaaactaatcatagaaaattttccaaatccc
ccatttcgattaatgcaataaaaaatgaaacttttctattttttcacttt
tttgcacctattcttcaaaatgaaaatatttatgattttaagttcttctt
ttattcaatgattttttacggcactttgttgacaatctaactcttgcatc
aaattcccgctttctttaGTAAATTGAAagtgagaaaaaacctaagccat
ggatcacggattgaaacaaatatatgaagggtggtattttacagccgccc
gtcgtgcaaggcactgaaaggccaggggtgccaaaaagaagggttTGAAA
TGCgacaacctcattggtggaaatttgataaacagctgggaaggagcgct
gggaagcaatcagtagaagagaccactttcgtttttgttgcagatttcta
taaaaacttctctaagggattacttgtcaatgtacatgtacacatttgtt
gtgtcaacttgtcagcattgtattgttgtaaaggaaaagatattGATGTT
ATCACCAAAAGCAACATTCCTTTACGAAAACacataaagaaaacaattat
tcCACGCGATCGTCAAATTCttatgcgaaaaagaaagaaactgaaGAAAA
GACAGCTCAACAAGAACACAAAGTCAAGATTGATCGATATCCAACTAAAA
TTACAAAGCAGCTATGCCAACGAAAGGTACAACCAAGAGCTAGATGCAAT
CTCCAAAATCAAAGTGAACCCCAAATTCTTCTACTCTTAcgcaaaaagat
tttctaaaaccAAACCTAAAGTGGGACCATTATTATTAGATCCCATCACA
AATAAGCTAACAGACAATAACCTTCAGATGGCCAATATACTTCAAGATCA
ATATAAATCTGTATTCACACCACCAAAATCATAATATGAAAATCCTGATC
TCAATCCTTTGCAAGTTACGGAGAAACTTGATTATTTTGACCTCACAGAG
GACGACTTTATTAGAGAGATACAAACCCTCTCTTTAAACTCAGCTGCTGG
CCCAGATGGCTTTCCAGCTATATTTCTACTCAAAAACAAATCACAGCTTG
CAAAACCACTCAGATTGATATGGCAGAACATTCTTGACAAAGGATTCACT
CCAAAGATACTGAAAACAAGTTACATCAcccctattttcaaaaaaggaaa
tcaAGGGTTGGCTGAAAACTATCGCCCTGTCACTCTTACATCACACGtca
ctaaattttttgaaaagattgtaaGAAAAAATTTGCAAGATCATCTGGAA
AGAAACAACCTCTACAACAGCAACCAACATGGATTTAGGTCAGGAA Coding sequence (CDS) from alignment at scaffold_213:1346486..1347831 >TCONS_00052438 ID=TCONS_00052438|Name=TCONS_00052438|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_213:1346486..1347831 (Clytia hemisphaerica)
ATGCgacaacctcattggtggaaatttgataaacagctgggaaggagcgc
tgggaagcaatcagtagaagagaccactttcgtttttgttgcagatttct
ataaaaacttctctaagggattacttgtcaatgtacatgtacacatttgt
tgtgtcaacttgtcagcattgtattgttgtaaaggaaaagatattGATGT
TATCACCAAAAGCAACATTCCTTTACGAAAACacataaagaaaacaatta
ttcCACGCGATCGTCAAATTCttatgcgaaaaagaaagaaactgaaGAAA
AGACAGCTCAACAAGAACACAAAGTCAAGATTGATCGATATCCAACTAAA
ATTACAAAGCAGCTATGCCAACGAAAGGTACAACCAAGAGCTAGATGCAA
TCTCCAAAATCAAAGTGAACCCCAAATTCTTCTACTCTTAcgcaaaaaga
ttttctaaaaccAAACCTAAAGTGGGACCATTATTATTAGATCCCATCAC
AAATAAGCTAACAGACAATAACCTTCAGATGGCCAATATACTTCAAGATC
AATATAAATCTGTATTCACACCACCAAAATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052438-exon-scaffold_213-1491911889:1346486..1347831 | TCONS_00052438-exon-scaffold_213-1491911889:1346486..1347831 | Clytia hemisphaerica | exon |
| TCONS_00052438-exon-scaffold_213-1510915933:1346486..1347831 | TCONS_00052438-exon-scaffold_213-1510915933:1346486..1347831 | Clytia hemisphaerica | exon |
| TCONS_00052438-exon-scaffold_213-1575043694:1346486..1347831 | TCONS_00052438-exon-scaffold_213-1575043694:1346486..1347831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1346486..1347831 . |
Blast
The following BLAST results are available for this feature:
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