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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052431 ID=TCONS_00052431|Name=TCONS_00052431|organism=Clytia hemisphaerica|type=transcript|length=1016bp
GAAGAAAGACGTTCTTTCTCCAGTAGACAATTTTTTCATATGCTACTTTT
ACAGCTTCTTCGAAATCTCTGGCTGGGATGTCATTCCATTTATAAGCTGG
CTGAGCTAAGATTTCGTCTACTGGTTTGTCAGGAGGTGGATCTGGCTCGA
CCAAATCTTGAGGAGATTGACTTTGAGGAAGTTGCTCATGTGTGACGTCA
GTTTCGACAGTTGTTTTTGACGTTGCAACAGCTTCTGATTTTGATCGATC
AGTTTTCATGCAAGCTCTTTGATGATTTGCCTTTCCGGTTTTTGAGTTGA
GTATCCTTGGGCAGAAATCACATTTCAGATCGTTGCTTGGTTGAGTGATA
GTGACCATTTCCACTGCCGATCTTTATGGTAAACTTAATACACTACCCGT
AGGCAGAGTATAAAAAGAAAAGGCTGGAAATGCTGCAACTCTTCAGGATT
ATCGGGGGGTCCCCTGCAGTAGGCTTCCCGCAGAGCCCGAAAAAATTCCA
GGAAAGAAAAGAGAACGATTTGAGTAGAGAACCGACTTGCCAAGGAAAAG
ATGGGCGAAATCGACTTTAATGGTTCTTAGTTTACCGTTGCGTTACGAGA
ATCAAGCAGAGTTCTTTTGTTGCTTTGTTGCCGTCTGTTTCGCCGAAGAA
AGACAGAAAGATAATGTTACGATAACTGCGAACATCAAATTTCTCAAGAA
ACCAAAATATGAACTTTAAATTACCAAAATTTCCACTTTCGGGAAGATAA
TTCTTGATTTATTTGTTCCGTNTTATAAGCTGGCTGAGCTAAGATTTCGT
CTACTGGTTTGTCAGGAGGTGGATCTGGCTCGACCAAATCTTGAGGAGAT
TGACTTTGAGGAAGTTGCTCATGTGTGACGTCAGTTTCGACAGTTGTTTT
TGACGTTGCAACAGCTTCTGATTTTGATCGATCAGTTTTCATGCAAGCTC
TTTGATGATTTGCCTTTCCGGTTTTTGAGTTGAGTATCCTTGGGCAGAAA
TCACATTTCAGATCGT Run BLAST on NCBI protein sequence of TCONS_00052431-protein >TCONS_00052431-protein ID=TCONS_00052431-protein|Name=TCONS_00052431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MVTITQPSNDLKCDFCPRILNSKTGKANHQRACMKTDRSKSEAVATSKTT
VETDVTHEQLPQSQSPQDLVEPDPPPDKPVDEILAQPAYKWNDIPARDFE
EAVKVAYEKIVYWRKNVFL Run BLAST on NCBI transcript from alignment at scaffold_213:918884..919899 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052431 ID=TCONS_00052431|Name=TCONS_00052431|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at scaffold_213:918884..919899 (Clytia hemisphaerica)
ACGATCTGAAATGTGATTTCTGCCCAAGGATACTCAACTCAAAAACCGGA
AAGGCAAATCATCAAAGAGCTTGCATGAAAACTGATCGATCAAAATCAGA
AGCTGTTGCAACGTCAAAAACAACTGTCGAAACTGACGTCACACATGAGC
AACTTCCTCAAAGTCAATCTCCTCAAGATTTGGTCGAGCCAGATCCACCT
CCTGACAAACCAGTAGACGAAATCTTAGCTCAGCCAGCTTATAANACGGA
ACAAATAAATCAAGAATTATCTTCCCGAAAGTGGAAATTTTGGTAATTTA
AAGTTCATATTTTGGTTTCTTGAGAAATTTGATGTTCGCAGTTATCGTAA
CATTATCTTTCTGTCTTTCTTCGGCGAAACAGACGGCAACAAAGCAACAA
AAGAACTCTGCTTGATTCTCGTAACGCAACGGTAAACTAAGAACCATTAA
AGTCGATTTCGCCCATCTTTTCCTTGGCAAGTCGGTTCTCTACTCAAATC
GTTCTCTTTTCTTTCCTGGAATTTTTTCGGGCTCTGCGGGAAGCCTACTG
CAGGGGACCCCCCGATAATCCTGAAGAGTTGCAGCATTTCCAGCCTTTTC
TTTTTATACTCTGCCTACGGGTAGTGTATTAAGTTTACCATAAAGATCGG
CAGTGGAAATGGTCACTATCACTCAACCAAGCAACGATCTGAAATGTGAT
TTCTGCCCAAGGATACTCAACTCAAAAACCGGAAAGGCAAATCATCAAAG
AGCTTGCATGAAAACTGATCGATCAAAATCAGAAGCTGTTGCAACGTCAA
AAACAACTGTCGAAACTGACGTCACACATGAGCAACTTCCTCAAAGTCAA
TCTCCTCAAGATTTGGTCGAGCCAGATCCACCTCCTGACAAACCAGTAGA
CGAAATCTTAGCTCAGCCAGCTTATAAATGGAATGACATCCCAGCCAGAG
ATTTCGAAGAAGCTGTAAAAGTAGCATATGAAAAAATTGTCTACTGGAGA
AAGAACGTCTTTCTTC Coding sequence (CDS) from alignment at scaffold_213:918884..919899 >TCONS_00052431 ID=TCONS_00052431|Name=TCONS_00052431|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_213:918884..919899 (Clytia hemisphaerica)
ATGGTCACTATCACTCAACCAAGCAACGATCTGAAATGTGATTTCTGCCC
AAGGATACTCAACTCAAAAACCGGAAAGGCAAATCATCAAAGAGCTTGCA
TGAAAACTGATCGATCAAAATCAGAAGCTGTTGCAACGTCAAAAACAACT
GTCGAAACTGACGTCACACATGAGCAACTTCCTCAAAGTCAATCTCCTCA
AGATTTGGTCGAGCCAGATCCACCTCCTGACAAACCAGTAGACGAAATCT
TAGCTCAGCCAGCTTATAAATGGAATGACATCCCAGCCAGAGATTTCGAA
GAAGCTGTAAAAGTAGCATATGAAAAAATTGTCTACTGGAGAAAGAACGT
CTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052431-exon-scaffold_213-1491911889:918884..919899 | TCONS_00052431-exon-scaffold_213-1491911889:918884..919899 | Clytia hemisphaerica | exon |
| TCONS_00052431-exon-scaffold_213-1510915933:918884..919899 | TCONS_00052431-exon-scaffold_213-1510915933:918884..919899 | Clytia hemisphaerica | exon |
| TCONS_00052431-exon-scaffold_213-1575043694:918884..919899 | TCONS_00052431-exon-scaffold_213-1575043694:918884..919899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:918884..919899 . |
Blast
The following BLAST results are available for this feature:
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