TCONS_00052425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052425
Unique NameTCONS_00052425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052425 ID=TCONS_00052425|Name=TCONS_00052425|organism=Clytia hemisphaerica|type=transcript|length=404bp
cccggggtaaaAGGCAAATAATTGTGAAAAACATTGTCTCCCATTAGCGA
AAATTTATCCTATTAAAGTATATTTTCTTGCTAGGATTAACTAGTACAAA
CTTTACCGTACTAATATTAATATTTTCTGtcactttattatttattttcc
gACTTTTCATACATTTCATAGCGTTCCTGTAACCAGATAGGCATCTTATA
GCGCGATTTTGTAATATAAGACTTTATTTATTGATCTTTCCATATATATT
TTCCATGCAAATATTGTACATAGTGCGTTCCTAGTTTGTATAAATGAAAT
ATGACGACTTCTAAATTCAGCTATCAGTCTATAGACCACAGAGATCTGTT
TTGCTTAGGATAAATTAGAAGGTGAGAAAATCGGCGTAATTAAAGTTCAG
AAAG
Run BLAST on NCBI

transcript from alignment at scaffold_213:753815..754218

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052425 ID=TCONS_00052425|Name=TCONS_00052425|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at scaffold_213:753815..754218 (Clytia hemisphaerica)
CTTTCTGAACTTTAATTACGCCGATTTTCTCACCTTCTAATTTATCCTAA
GCAAAACAGATCTCTGTGGTCTATAGACTGATAGCTGAATTTAGAAGTCG
TCATATTTCATTTATACAAACTAGGAACGCACTATGTACAATATTTGCAT
GGAAAATATATATGGAAAGATCAATAAATAAAGTCTTATATTACAAAATC
GCGCTATAAGATGCCTATCTGGTTACAGGAACGCTATGAAATGTATGAAA
AGTcggaaaataaataataaagtgaCAGAAAATATTAATATTAGTACGGT
AAAGTTTGTACTAGTTAATCCTAGCAAGAAAATATACTTTAATAGGATAA
ATTTTCGCTAATGGGAGACAATGTTTTTCACAATTATTTGCCTtttaccc
cggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033150XLOC_033150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052425-exon-scaffold_213-1491911889:753815..754218TCONS_00052425-exon-scaffold_213-1491911889:753815..754218Clytia hemisphaericaexon
TCONS_00052425-exon-scaffold_213-1510915933:753815..754218TCONS_00052425-exon-scaffold_213-1510915933:753815..754218Clytia hemisphaericaexon
TCONS_00052425-exon-scaffold_213-1575043694:753815..754218TCONS_00052425-exon-scaffold_213-1575043694:753815..754218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:753815..754218 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.153315	0	0	0	0.121001	0	0.41324	0	0.409739	0	0	0	0	0.772212	0.625817	0	0.586014	0.697337	0.249472	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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