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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052421 ID=TCONS_00052421|Name=TCONS_00052421|organism=Clytia hemisphaerica|type=transcript|length=1929bp
CTGAAAGTCAGAAGGAGAAAGCTGCTAGTATCGGAGAGGTTTCGCCAATT
TGAATGTTGATTTTGATCGCAGAGCTTAATGGTATTTTGGCATAGGAGGA
AAGTGTTGTCACTATACAAAAAGGTTTTATTGCGTTCTCAAGAGGAAATG
TTGACAAAACGCCCTTTGGCTTCAACTCATGTCATGAGAAAATATTTACT
CGTTTTTGCCGTTGGGCTACTATTTACCACATTTATGTTCATTTTGGCAC
CCCGTCAGTTGCATTCTGATGGCGGTGATGGGCGGTACCGTTACCAGGAT
AACACTAATAGGCGTGAGAGATACTTATATAAAGATGTGAAAACTTTATT
GGCGGAATTCGAGGGCGNAAGGCGTGAGAGATACTTGTATAAAGATGTGA
AAACTTTATTGGCGGAATTCGAGGGCAGTGGTAGCCAAGAGGCAATCGCT
GATTTTATGGAATCAAGAAAGCAAgttgttttgttgaaagaaaAGGAGAA
ACAGTTGAAAAGAGAACTTGAAATGACGAAGATGAAAGACAGAAAAATTA
AGAGTGCTAAAACTGATGATGTACAAGGTCTGGTTAAAATGGTTCAAAAT
TTGTCTTCTAAAGTGGATcttctttcaaaacaaatgaaaacatCTTTAAA
AGGACGCGAAGAAAAAGCTCACATCACAAATTTACAGGATGTGCGTCAAT
GCAAGGACCCGTTCATATTGTTTCTTGTCACGTCTCACTTATCCAATTAT
GACCGACGGAAAATGATACGACAAAACTGGGGCAATCAagacaaattttt
tcaaaaatttaacaaacGCTACAACCTGACTTATGACGTTTACTTTAATG
TAGGAACTGGGAAGGACCGTGAATCCATTGAGAGGACTAAGAACGAGTCA
CGTGTGTTCGGTGATTTACTCATTGTCGATCGTCAAGAAGACTTTTATGA
TTTGACACGAAGGTTGATGATTGCTTTTGAATGGTCTGTCACCAATTGTC
AATTTCAATATCTCTTTAAGATAGATGATGACATCTTCGTCAATATTCCA
AACCTGTTTTCTTTCTTATCGAATAACACATTTAAAGATTCCTTCGGTCT
GTACGCCGGTGACATGAACAAGAACGCGGAAGTCAACCGTGATTCGCGTA
GTAAATACGTGGTGACGTATGACGAATGGCCCGTTGAGACGTATCCNGGT
CTTTACGCCGGTGACATGAACAAGAACGCGGAAGTCAACCGTGATTCGCG
TAGTAAATACGTGGTGACGTATGACGAATGGCCCGTTGAGACGTATCCCC
CGTATTGCAGTGGCGGTGGGTTTGCTTTATCCCGTACTATCGTTGAAAAG
ATGATACCGTATTATGACTGGGCCAATCCgtacaaaattgatgatgtttA
TGTTGGAATGCTCATACAGCGCGCCAAAGTAAGAAATATCATTTTGTACG
AACCGGCGCACCGTTANAATGCTCATACAGCGCGCCAAAGTGAGAAATAT
CATTTTGTACGAACCGGCGCACCGTTATCAATTTTGGTTCTATAACAAAC
CTTCTAACTGTGaatatatttcaaaatcaattgtTTATCATAAAGTGATT
AATTTTTCATGCATGCGTAATTTGACCCaacaatcaaccaatcagattga
aGATTCACTACGTATGATCGAATATTTTCGAACCAGAcctccgccattat
ggaaattggCCAAAGCGAGTGTACCAAGTCATCGGCACTTACAGAAAGTC
TTCATGGCTGAGGATAGTTCATGGAGAATGAAGTAGAACTTTTGAGACCT
TCAATGACAACGCTACTTTAGTCATAGATAGATATATTCAGTATTATCAG
AATTTACAAGTATGATAAAATTTCTACTACTTAATTGTACTATTAATCTT
AATATACAGTTCCCTATCTTAAATTCAAT Run BLAST on NCBI protein sequence of TCONS_00052421-protein >TCONS_00052421-protein ID=TCONS_00052421-protein|Name=TCONS_00052421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MVFWHRRKVLSLYKKVLLRSQEEMLTKRPLASTHVMRKYLLVFAVGLLFT
TFMFILAPRQLHSDGGDGRYRYQDNTNRRERYLYKDVKTLLAEFEGXRRE
RYLYKDVKTLLAEFEGSGSQEAIADFMESRKQVVLLKEKEKQLKRELEMT
KMKDRKIKSAKTDDVQGLVKMVQNLSSKVDLLSKQMKTSLKGREEKAHIT
NLQDVRQCKDPFILFLVTSHLSNYDRRKMIRQNWGNQDKFFQKFNKRYNL
TYDVYFNVGTGKDRESIERTKNESRVFGDLLIVDRQEDFYDLTRRLMIAF
EWSVTNCQFQYLFKIDDDIFVNIPNLFSFLSNNTFKDSFGLYAGDMNKNA
EVNRDSRSKYVVTYDEWPVETYXGLYAGDMNKNAEVNRDSRSKYVVTYDE
WPVETYPPYCSGGGFALSRTIVEKMIPYYDWANPYKIDDVYVGMLIQRAK
VRNIILYEPAHRXNAHTARQSEKYHFVRTGAPLSILVL Run BLAST on NCBI transcript from alignment at scaffold_213:668809..670737 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052421 ID=TCONS_00052421|Name=TCONS_00052421|organism=Clytia hemisphaerica|type=transcript|length=1929bp|location=Sequence derived from alignment at scaffold_213:668809..670737 (Clytia hemisphaerica)
ATTGAATTTAAGATAGGGAACTGTATATTAAGATTAATAGTACAATTAAG
TAGTAGAAATTTTATCATACTTGTAAATTCTGATAATACTGAATATATCT
ATCTATGACTAAAGTAGCGTTGTCATTGAAGGTCTCAAAAGTTCTACTTC
ATTCTCCATGAACTATCCTCAGCCATGAAGACTTTCTGTAAGTGCCGATG
ACTTGGTACACTCGCTTTGGccaatttccataatggcggaggTCTGGTTC
GAAAATATTCGATCATACGTAGTGAATCttcaatctgattggttgattgt
tGGGTCAAATTACGCATGCATGAAAAATTAATCACTTTATGATAAacaat
tgattttgaaatatattCACAGTTAGAAGGTTTGTTATAGAACCAAAATT
GATAACGGTGCGCCGGTTCGTACAAAATGATATTTCTCACTTTGGCGCGC
TGTATGAGCATTNTAACGGTGCGCCGGTTCGTACAAAATGATATTTCTTA
CTTTGGCGCGCTGTATGAGCATTCCAACATaaacatcatcaattttgtac
GGATTGGCCCAGTCATAATACGGTATCATCTTTTCAACGATAGTACGGGA
TAAAGCAAACCCACCGCCACTGCAATACGGGGGATACGTCTCAACGGGCC
ATTCGTCATACGTCACCACGTATTTACTACGCGAATCACGGTTGACTTCC
GCGTTCTTGTTCATGTCACCGGCGTAAAGACCNGGATACGTCTCAACGGG
CCATTCGTCATACGTCACCACGTATTTACTACGCGAATCACGGTTGACTT
CCGCGTTCTTGTTCATGTCACCGGCGTACAGACCGAAGGAATCTTTAAAT
GTGTTATTCGATAAGAAAGAAAACAGGTTTGGAATATTGACGAAGATGTC
ATCATCTATCTTAAAGAGATATTGAAATTGACAATTGGTGACAGACCATT
CAAAAGCAATCATCAACCTTCGTGTCAAATCATAAAAGTCTTCTTGACGA
TCGACAATGAGTAAATCACCGAACACACGTGACTCGTTCTTAGTCCTCTC
AATGGATTCACGGTCCTTCCCAGTTCCTACATTAAAGTAAACGTCATAAG
TCAGGTTGTAGCgtttgttaaatttttgaaaaaatttgtctTGATTGCCC
CAGTTTTGTCGTATCATTTTCCGTCGGTCATAATTGGATAAGTGAGACGT
GACAAGAAACAATATGAACGGGTCCTTGCATTGACGCACATCCTGTAAAT
TTGTGATGTGAGCTTTTTCTTCGCGTCCTTTTAAAGatgttttcatttgt
tttgaaagaagATCCACTTTAGAAGACAAATTTTGAACCATTTTAACCAG
ACCTTGTACATCATCAGTTTTAGCACTCTTAATTTTTCTGTCTTTCATCT
TCGTCATTTCAAGTTCTCTTTTCAACTGTTTCTCCTtttctttcaacaaa
acaacTTGCTTTCTTGATTCCATAAAATCAGCGATTGCCTCTTGGCTACC
ACTGCCCTCGAATTCCGCCAATAAAGTTTTCACATCTTTATACAAGTATC
TCTCACGCCTTNCGCCCTCGAATTCCGCCAATAAAGTTTTCACATCTTTA
TATAAGTATCTCTCACGCCTATTAGTGTTATCCTGGTAACGGTACCGCCC
ATCACCGCCATCAGAATGCAACTGACGGGGTGCCAAAATGAACATAAATG
TGGTAAATAGTAGCCCAACGGCAAAAACGAGTAAATATTTTCTCATGACA
TGAGTTGAAGCCAAAGGGCGTTTTGTCAACATTTCCTCTTGAGAACGCAA
TAAAACCTTTTTGTATAGTGACAACACTTTCCTCCTATGCCAAAATACCA
TTAAGCTCTGCGATCAAAATCAACATTCAAATTGGCGAAACCTCTCCGAT
ACTAGCAGCTTTCTCCTTCTGACTTTCAG Coding sequence (CDS) from alignment at scaffold_213:668809..670737 >TCONS_00052421 ID=TCONS_00052421|Name=TCONS_00052421|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_213:668809..670737 (Clytia hemisphaerica)
TTATAGAACCAAAATTGATAACGGTGCGCCGGTTCGTACAAAATGATATT
TCTCACTTTGGCGCGCTGTATGAGCATTNTAACGGTGCGCCGGTTCGTAC
AAAATGATATTTCTTACTTTGGCGCGCTGTATGAGCATTCCAACATaaac
atcatcaattttgtacGGATTGGCCCAGTCATAATACGGTATCATCTTTT
CAACGATAGTACGGGATAAAGCAAACCCACCGCCACTGCAATACGGGGGA
TACGTCTCAACGGGCCATTCGTCATACGTCACCACGTATTTACTACGCGA
ATCACGGTTGACTTCCGCGTTCTTGTTCATGTCACCGGCGTAAAGACCNG
GATACGTCTCAACGGGCCATTCGTCATACGTCACCACGTATTTACTACGC
GAATCACGGTTGACTTCCGCGTTCTTGTTCATGTCACCGGCGTACAGACC
GAAGGAATCTTTAAATGTGTTATTCGATAAGAAAGAAAACAGGTTTGGAA
TATTGACGAAGATGTCATCATCTATCTTAAAGAGATATTGAAATTGACAA
TTGGTGACAGACCATTCAAAAGCAATCATCAACCTTCGTGTCAAATCATA
AAAGTCTTCTTGACGATCGACAATGAGTAAATCACCGAACACACGTGACT
CGTTCTTAGTCCTCTCAATGGATTCACGGTCCTTCCCAGTTCCTACATTA
AAGTAAACGTCATAAGTCAGGTTGTAGCgtttgttaaatttttgaaaaaa
tttgtctTGATTGCCCCAGTTTTGTCGTATCATTTTCCGTCGGTCATAAT
TGGATAAGTGAGACGTGACAAGAAACAATATGAACGGGTCCTTGCATTGA
CGCACATCCTGTAAATTTGTGATGTGAGCTTTTTCTTCGCGTCCTTTTAA
AGatgttttcatttgttttgaaagaagATCCACTTTAGAAGACAAATTTT
GAACCATTTTAACCAGACCTTGTACATCATCAGTTTTAGCACTCTTAATT
TTTCTGTCTTTCATCTTCGTCATTTCAAGTTCTCTTTTCAACTGTTTCTC
CTtttctttcaacaaaacaacTTGCTTTCTTGATTCCATAAAATCAGCGA
TTGCCTCTTGGCTACCACTGCCCTCGAATTCCGCCAATAAAGTTTTCACA
TCTTTATACAAGTATCTCTCACGCCTTNCGCCCTCGAATTCCGCCAATAA
AGTTTTCACATCTTTATATAAGTATCTCTCACGCCTATTAGTGTTATCCT
GGTAACGGTACCGCCCATCACCGCCATCAGAATGCAACTGACGGGGTGCC
AAAATGAACATAAATGTGGTAAATAGTAGCCCAACGGCAAAAACGAGTAA
ATATTTTCTCATGACATGAGTTGAAGCCAAAGGGCGTTTTGTCAACATTT
CCTCTTGAGAACGCAATAAAACCTTTTTGTATAGTGACAACACTTTCCTC
CTATGCCAAAATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052421-exon-scaffold_213-1491911889:668809..670737 | TCONS_00052421-exon-scaffold_213-1491911889:668809..670737 | Clytia hemisphaerica | exon |
| TCONS_00052421-exon-scaffold_213-1510915933:668809..670737 | TCONS_00052421-exon-scaffold_213-1510915933:668809..670737 | Clytia hemisphaerica | exon |
| TCONS_00052421-exon-scaffold_213-1575043694:668809..670737 | TCONS_00052421-exon-scaffold_213-1575043694:668809..670737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:668809..670737 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00052421 vs. Swiss-Prot (Human)
Match: B3GL1 (UDP-GalNAc:::beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B3GALNT1 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.239e-20 Identity = 70/262 (26.72%), Postives = 120/262 (45.80%), Query Frame = 1
Query: 670 HITNLQDVRQC--KDPFILFLVTSHLSNYDRRKMIRQNWGNQDKFFQKFNKRYNLTYDV--YFNVGTGKDRES---IERTKNESRVFGDLLIVDRQEDFYDLTRRLMIAFEWSVTNC-QFQYLFKIDDDIFVNIPNLFSFLSNNTFKDSFGLYAGDMNKNAEVNRDSRSKYVVTYDEWPVETYPGLYAGDMNKNAEVNRDSRSKYVVTYDEWPVETYPPYCSGGGFALSRTIVEKMIPYYDWANPYKIDDVYVGMLIQRAKV 1431
H T L++ C ++PF++ LVTSH S+ R+ IR WG + ++ Y+V +F +G ++E ++E ++GD++ D + + +LT + ++AF W C +Y+ K D D+F+N NL +L +N + K+ Y +Y G Y K ++Y E+P + +PPYCSG G+ +SR +V ++ P K +DVYVG+ + KV
Sbjct: 64 HFT-LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWG---------YEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYL---------------------LNLNHSEKFFTGYPLIDNYSYRGFY---------------QKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMGHVKPIKFEDVYVGICLNLLKV 279
The following BLAST results are available for this feature:
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