TCONS_00052406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052406
Unique NameTCONS_00052406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052406 ID=TCONS_00052406|Name=TCONS_00052406|organism=Clytia hemisphaerica|type=transcript|length=313bp
TAATCATCAGACATTTTTTGGTTTCCACCGGCCATTTTGAAGagtaaatt
ttacttttgtCCGGTGAAAACTTGAGATGGCTTGTTGAGTAAATGTAACG
AAGCACTTTCCCTGCTCTGTTTTATTTGTTActtgttttattttctcata
ATCAGTAGCATTCAATGACTAGAGAAACATTTAGTGGTATTTTAAACCTA
GATCTTGAGCTATTTTGTcactccaaaattttttttaaaatcacTAAACA
AGTCACAGATGATATTTTCTCAAAGGCCTTTAAAGAATAATCAAGAAAAT
GATTACCATGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_213:185423..185735

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052406 ID=TCONS_00052406|Name=TCONS_00052406|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at scaffold_213:185423..185735 (Clytia hemisphaerica)
GGACATGGTAATCATTTTCTTGATTATTCTTTAAAGGCCTTTGAGAAAAT
ATCATCTGTGACTTGTTTAgtgattttaaaaaaaattttggagtgACAAA
ATAGCTCAAGATCTAGGTTTAAAATACCACTAAATGTTTCTCTAGTCATT
GAATGCTACTGATtatgagaaaataaaacaagTAACAAATAAAACAGAGC
AGGGAAAGTGCTTCGTTACATTTACTCAACAAGCCATCTCAAGTTTTCAC
CGGacaaaagtaaaatttactCTTCAAAATGGCCGGTGGAAACCAAAAAA
TGTCTGATGATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033131XLOC_033131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052406-exon-scaffold_213-1491911889:185423..185735TCONS_00052406-exon-scaffold_213-1491911889:185423..185735Clytia hemisphaericaexon
TCONS_00052406-exon-scaffold_213-1510915933:185423..185735TCONS_00052406-exon-scaffold_213-1510915933:185423..185735Clytia hemisphaericaexon
TCONS_00052406-exon-scaffold_213-1575043694:185423..185735TCONS_00052406-exon-scaffold_213-1575043694:185423..185735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:185423..185735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.376379	1.46731	0.905074	0	0	0.345509	0	0.233408	0	0.387296	0	0	0	0	0	0.345804	0	0.841102	0.374417	0	0	0	1.67879	0.798164	2.75573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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