|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052403 ID=TCONS_00052403|Name=TCONS_00052403|organism=Clytia hemisphaerica|type=transcript|length=1602bp
GCCATGTGCTGATAAAGTTACACAAAGGGCTTTTTTCAGGACACATGTAG
TCAAACAGATTCAGTTTTTgaactttctttcaaaaagatgcAATATCAGA
ATATAATTCACATTTTTTCGTTACATATATACATTTATATAATTTTCTAT
CCTCGATCTGCATAAAGGGCAAGTTTGTAGCGCCACTCTCATGTCTCTGA
TTCTGTTCATACAGTTTGTACATAGACACAAATGACGACAAGGAAGaagt
aaaattgttcttttcttATCTTGACAGATAACACAATCAAGTATGTCTCT
ATTTCCATCATCTGTTCTGtgtgaaaataaattaaagGGCCAAAACCAAA
ATCTTTCCCTGTGATTATGTCCTGTGTTCAATCCACTACCAAAGCgtaga
aattgaaaaagttttaatgTCAATTCTGAATTGAATATTAATACTGATAC
ACAAAGCAtgcaaaaaattgcaattaagATTTCAAGTCTTGATAACTTGC
TTATTACAGCCTGTGATAGTTCCAAAGGAAACATGAAAATCCCTTTGAGG
AACACATAAAACATCACTACCAAATGATTTATTGCACCACATAGATAGAC
AGTATTTGAATAACACCAGTAGCAAAATTCTTCTATTGATGTCCATAAGT
TTGCACCAGTCGAGAGCAtaatttcaccaaaatttgcAACCAACTGAAGA
GGCCAAAATATGAACAAATATAAGACCCAATTGCCTAACGAATTTATATG
TGATTCCAAGAAAACTGCAATACACTTTATAAAATCCAAAAACAAATACC
CAACGGTCGTTGTGACACCCCATGTTGATTTAGAAAGTGTGGCAATAAAC
TTAATCATGACGTTGAAAAATTCACAACTTTCTTTGAAACATGTTGAAGC
AAATTGCTCCAAAATAGTTTGGGAATCATATCCAACATCCATGACAGAAT
GCCATGCAGTGTCCAGTGAGTTTGACAAAGATGTTTTTATCCCAAAGAAA
AAAGTTGCAATAAATTCGATAGTACACTGTATTATTGCTATAAATAAATC
TTTTAAATTGGTCAAAAGTGAAGTAAGTCCATGATACAAAGTGAATGGCA
GTCCAAAAAATCCATTGATGGTGTTTGTAATCAAATCAACTGTGAATGTT
TGAGTTGTTTGGATTGTGTATTTGATAAAACCCAAAGTATGGAATATCCT
TGAACATAGGACATGATTAAGATTCAAAATGACTCTTACACTTTCATgaa
tcaaagaaaatgtttgtgGGACAATTTCAACAAATCGAAAACACCAAAAT
GTCACATCGCAAACCAACCAGATAATTCCATCAAATAAGCTTGCCAAATG
CGATAGCATTACTTCTACTCATGAATAGCTACTTCAAATTAAAAGAAGCA
TAATTTAGTGCTCTACTAATGGTTGGAAAGAGAGCTCGTTCAAATACTAT
ACTTGGTCAAGACCGGACGGACAGGACAGGGTATAATAAGCAGATTTTAG
cggtttttttcattatttcaaaattttaatccgCCATTTGTTTTTCTAGA
CTAGATTGATACTTTTCTCCTTGAATTTGAAGCATTCATGcgtgtctttc
at Run BLAST on NCBI protein sequence of TCONS_00052403-protein >TCONS_00052403-protein ID=TCONS_00052403-protein|Name=TCONS_00052403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MLSHLASLFDGIIWLVCDVTFWCFRFVEIVPQTFSLIHESVRVILNLNHV
LCSRIFHTLGFIKYTIQTTQTFTVDLITNTINGFFGLPFTLYHGLTSLLT
NLKDLFIAIIQCTIEFIATFFFGIKTSLSNSLDTAWHSVMDVGYDSQTIL
EQFASTCFKESCEFFNVMIKFIATLSKSTWGVTTTVGYLFLDFIKCIAVF
LESHINSLGNWVLYLFIFWPLQLVANFGEIMLSTGANLWTSIEEFCYWCY
SNTVYLCGAINHLVVMFYVFLKGIFMFPLELSQAVISKLSRLEILIAIFC
MLCVSVLIFNSELTLKLFQFLRFGSGLNTGHNHRERFWFWPFNLFSHRTD
DGNRDILDCVICQDKKRTILLLPCRHLCLCTNCMNRIRDMRVALQTCPLC
RSRIENYINVYM Run BLAST on NCBI transcript from alignment at scaffold_213:78239..79840 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052403 ID=TCONS_00052403|Name=TCONS_00052403|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at scaffold_213:78239..79840 (Clytia hemisphaerica)
atgaaagacacgCATGAATGCTTCAAATTCAAGGAGAAAAGTATCAATCT
AGTCTAGAAAAACAAATGGcggattaaaattttgaaataatgaaaaaaac
cgCTAAAATCTGCTTATTATACCCTGTCCTGTCCGTCCGGTCTTGACCAA
GTATAGTATTTGAACGAGCTCTCTTTCCAACCATTAGTAGAGCACTAAAT
TATGCTTCTTTTAATTTGAAGTAGCTATTCATGAGTAGAAGTAATGCTAT
CGCATTTGGCAAGCTTATTTGATGGAATTATCTGGTTGGTTTGCGATGTG
ACATTTTGGTGTTTTCGATTTGTTGAAATTGTCCcacaaacattttcttt
gattcATGAAAGTGTAAGAGTCATTTTGAATCTTAATCATGTCCTATGTT
CAAGGATATTCCATACTTTGGGTTTTATCAAATACACAATCCAAACAACT
CAAACATTCACAGTTGATTTGATTACAAACACCATCAATGGATTTTTTGG
ACTGCCATTCACTTTGTATCATGGACTTACTTCACTTTTGACCAATTTAA
AAGATTTATTTATAGCAATAATACAGTGTACTATCGAATTTATTGCAACT
TTTTTCTTTGGGATAAAAACATCTTTGTCAAACTCACTGGACACTGCATG
GCATTCTGTCATGGATGTTGGATATGATTCCCAAACTATTTTGGAGCAAT
TTGCTTCAACATGTTTCAAAGAAAGTTGTGAATTTTTCAACGTCATGATT
AAGTTTATTGCCACACTTTCTAAATCAACATGGGGTGTCACAACGACCGT
TGGGTATTTGTTTTTGGATTTTATAAAGTGTATTGCAGTTTTCTTGGAAT
CACATATAAATTCGTTAGGCAATTGGGTCTTATATTTGTTCATATTTTGG
CCTCTTCAGTTGGTTgcaaattttggtgaaattaTGCTCTCGACTGGTGC
AAACTTATGGACATCAATAGAAGAATTTTGCTACTGGTGTTATTCAAATA
CTGTCTATCTATGTGGTGCAATAAATCATTTGGTAGTGATGTTTTATGTG
TTCCTCAAAGGGATTTTCATGTTTCCTTTGGAACTATCACAGGCTGTAAT
AAGCAAGTTATCAAGACTTGAAATcttaattgcaattttttgcaTGCTTT
GTGTATCAGTATTAATATTCAATTCAGAATTGAcattaaaactttttcaa
tttctacGCTTTGGTAGTGGATTGAACACAGGACATAATCACAGGGAAAG
ATTTTGGTTTTGGCCctttaatttattttcacaCAGAACAGATGATGGAA
ATAGAGACATACTTGATTGTGTTATCTGTCAAGATaagaaaagaacaatt
ttacttCTTCCTTGTCGTCATTTGTGTCTATGTACAAACTGTATGAACAG
AATCAGAGACATGAGAGTGGCGCTACAAACTTGCCCTTTATGCAGATCGA
GGATAGAAAATTATATAAATGTATATATGTAACGAAAAAATGTGAATTAT
ATTCTGATATTgcatctttttgaaagaaagttcAAAAACTGAATCTGTTT
GACTACATGTGTCCTGAAAAAAGCCCTTTGTGTAACTTTATCAGCACATG
GC Coding sequence (CDS) from alignment at scaffold_213:78239..79840 >TCONS_00052403 ID=TCONS_00052403|Name=TCONS_00052403|organism=Clytia hemisphaerica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_213:78239..79840 (Clytia hemisphaerica)
ATGCTATCGCATTTGGCAAGCTTATTTGATGGAATTATCTGGTTGGTTTG
CGATGTGACATTTTGGTGTTTTCGATTTGTTGAAATTGTCCcacaaacat
tttctttgattcATGAAAGTGTAAGAGTCATTTTGAATCTTAATCATGTC
CTATGTTCAAGGATATTCCATACTTTGGGTTTTATCAAATACACAATCCA
AACAACTCAAACATTCACAGTTGATTTGATTACAAACACCATCAATGGAT
TTTTTGGACTGCCATTCACTTTGTATCATGGACTTACTTCACTTTTGACC
AATTTAAAAGATTTATTTATAGCAATAATACAGTGTACTATCGAATTTAT
TGCAACTTTTTTCTTTGGGATAAAAACATCTTTGTCAAACTCACTGGACA
CTGCATGGCATTCTGTCATGGATGTTGGATATGATTCCCAAACTATTTTG
GAGCAATTTGCTTCAACATGTTTCAAAGAAAGTTGTGAATTTTTCAACGT
CATGATTAAGTTTATTGCCACACTTTCTAAATCAACATGGGGTGTCACAA
CGACCGTTGGGTATTTGTTTTTGGATTTTATAAAGTGTATTGCAGTTTTC
TTGGAATCACATATAAATTCGTTAGGCAATTGGGTCTTATATTTGTTCAT
ATTTTGGCCTCTTCAGTTGGTTgcaaattttggtgaaattaTGCTCTCGA
CTGGTGCAAACTTATGGACATCAATAGAAGAATTTTGCTACTGGTGTTAT
TCAAATACTGTCTATCTATGTGGTGCAATAAATCATTTGGTAGTGATGTT
TTATGTGTTCCTCAAAGGGATTTTCATGTTTCCTTTGGAACTATCACAGG
CTGTAATAAGCAAGTTATCAAGACTTGAAATcttaattgcaattttttgc
aTGCTTTGTGTATCAGTATTAATATTCAATTCAGAATTGAcattaaaact
ttttcaatttctacGCTTTGGTAGTGGATTGAACACAGGACATAATCACA
GGGAAAGATTTTGGTTTTGGCCctttaatttattttcacaCAGAACAGAT
GATGGAAATAGAGACATACTTGATTGTGTTATCTGTCAAGATaagaaaag
aacaattttacttCTTCCTTGTCGTCATTTGTGTCTATGTACAAACTGTA
TGAACAGAATCAGAGACATGAGAGTGGCGCTACAAACTTGCCCTTTATGC
AGATCGAGGATAGAAAATTATATAAATGTATATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052403-exon-scaffold_213-1491911889:78239..79840 | TCONS_00052403-exon-scaffold_213-1491911889:78239..79840 | Clytia hemisphaerica | exon |
| TCONS_00052403-exon-scaffold_213-1510915933:78239..79840 | TCONS_00052403-exon-scaffold_213-1510915933:78239..79840 | Clytia hemisphaerica | exon |
| TCONS_00052403-exon-scaffold_213-1575043694:78239..79840 | TCONS_00052403-exon-scaffold_213-1575043694:78239..79840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:78239..79840 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001841 | Znf_RING |
Blast
The following BLAST results are available for this feature:
|
