TCONS_00052399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052399
Unique NameTCONS_00052399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052399 ID=TCONS_00052399|Name=TCONS_00052399|organism=Clytia hemisphaerica|type=transcript|length=463bp
CGAAAAAATAGGAAATAAAGCATAACGTTGGTACTGGCTAGAGGCTCGAC
AGGCGCCAAGAGACAGCACAGCGACGGCAGTTGGCCCAATCGGGCCAATT
ATCATCAAGTTCTATTCCTGCCTGAGATGTGAGTGCTCATGCTTATTTTT
TGGTTTGGAATTCTGTCCACAGACTGGTAAAGCTCATCCTGGCATAAAAT
CAAATCCCAAGCAGAGTGAACAGCAATAAGAATTAGATTAGAATAAAAAC
AAGATGAGTTCAACAGAAGATCTAACATCGAAATACCAAAGACTTGGGCA
GGAATACCAAAAGgCAAGAGCGCAAATCACTGTTTTGAAAAAGGGTGTGG
TTGATGAGCAAACATCAAATAAAGTTTTGCAGGATGCCTTGAAACAGAAG
GATCAGACAACAAGAAAATATGAACAAGATATTGATAGTTTGCAGTTTCG
TAATTCACAGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_213:1334464..1339548-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052399 ID=TCONS_00052399|Name=TCONS_00052399|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at scaffold_213:1334464..1339548- (Clytia hemisphaerica)
CGAAAAAATAGGAAATAAAGCATAACGTTGGTACTGGCTAGAGGCTCGAC AGGCGCCAAGAGACAGCACAGCGACGGCAGTTGGCCCAATCGGGCCAATT ATCATCAAGTTCTATTCCTGCCTGAGATGTGAGTGCTCATGCTTATTTTT TGGTTTGGAATTCTGTCCACAGACTGGTAAAGCTCATCCTGGCATAAAAT CAAATCCCAAGCAGAGTGAACAGCAATAAGAATTAGGTATTAAGTATACT TTTCTTTTCTTTTAGCTAGTTTTAGAGATATACCGTGAGATTGGGTAACT TGCATCAGTGGAGGCTAACATGCATAGCGGGCATAGCCCTCAAATGAAAG ACCTGGCTGGTCATTAAAATACAACTCTCGCAGCTCTACTCTATACCATT TTTGTTTTGATTTAACTTTGTATTTTAATGACCAGTCAGGTCTTTCATTT GAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAAATCTCACG GTATCTGTAGCTATCTATTTTTCATTGCATCATCATCAGTTGTCCTCATA TCCATCAGGACCTTCCTCCTGTCTAGTTTGCAAAGAATGGCACATTTGCT TGCTCAAGATCTCGAGTGCATAACTCGGAAAAAGTTGAGTGCAATTCGTT TGATATTCGTTTGATATTCTCAAATTTGTGTTTTACACAACATACTCTAT TGGCTTCCAATAGTTTGCAGACCCAAACTTAACCGCTTCACACACAGAGG CCCAAGTTGTCATATTCGCATAATTAAGATTTTGCGGTGTAGCAATTTTA GAGAGAGCACACTGTTTTTGTGACTACTTTTGGAATTGGAAACTATTTGA AGCCAATAGAGTATGTTACCAAGAAGAGTAATTGTGTAAAATTTGACCAC TCAACCAGCAAAAATCGCCAGTGAGACCAATTGAGGCCTCTACATTTTTT TTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTGTGTTTGTTC GTCCGTTTGTCCGTCCGTTCCTTCGTTCGTTCGTCTGTTACCAACTTTTC TCAGGATTGAATGATAGGAATCTTTGGTGGTCTAAAATGGTGGTACCCAA AATGTGACGGAGCCTGATTTTCGAAAAAAAAAATTTTGGGGCAAATTTGG GCCAAAAAACAGCTAAAAAACGGGTTTTTTAGACTTTATGAAAAATTGGA TCATTAATTTTTTCTGATTTTTTGTATGAAAGTAGGGTACCATAGTTAAA AGATGGCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAAAG CATGTTTATCTATAAGAATCACTATTAACAAGCATACATCAATGTTCTTA GTCAAATTACTGAATTTTTTTATGAGATAGATGTTTTTTTTGCTCACGAG GGCTTACATTTGAAGCATATGTGTGTTTAGACATGAAATTTTGGTTGCTT GGCGTGTTTTTATATAAAAACTGGCCAAATTCGATATTTTTTTATAAGCA CATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATT CTTAATGATTTTTTGCACAAAGATGCATAACTTTAAACCCTTATTTGTGA CGGAGCCTGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTTGGCCAAAA ACGGCTAAAAAAAAGGTTTTTTGGACTTTGTGAAAAATTGAATCATTGTT TTTTTTTCTGATTTTTTACATGAAAGTAGGTAAAAGATGGCTCAAGCAGA TTTTTATAAAAAAAGAATTTTTCAGCTCGAAAAAGGCATCTTTATTACAA GAATCACAATTAATAAGCATACATCAATGTTCTCGGTAAAAACATTGTGA ATTTTGATATCAGAAGTGAAATATCGGGAGGTCGTCAGTAGTCCGACACT TTCTAGTCCGACAGTAAAAATGTCCGACGTTGGATTTGACGAAAGTGTCA GTATTCCGACAACAATTTTGTCCGACAACGAGTCAAAAAAAAACATATAA AAATCGAAATATGAATCGTGGAAGAGGAAACACATTTTTTCCTAATTTGA GGTTAGGCCCCTAAACCCGACTTGTCTTAAATTTTGGAAAGCTTGTTAGG ATTAGGCTTTCAAGAGTCAAGAGATTGGATTTAGCTGTTTTTACGACCCT TCTTTAGTGATTTACAACCCTGATTGGTCCTTTATTTCTACTTATGCCAA AATGTCGCCAAAATAAACTTTTATTAATATTATCTCAGAGAAAAACCCTT ATTCAACATTCGACACTCTAAAATCTTGCGTTTTCGGACAAAAGTGACGT CGGAAAAAAAGACTTCCAAATTGTAAATTTATTTTATAGATTCGGACTAT TTTACTGTCGGACTAGAAAATGTCGGACTAGTGACATGCACCCGAAATAT CAACGATGTAACTTCATTTTATTTTTATTTTACTTGACAATATATTTCGA TACTTTTTCGATACTACATCAATGTTCTTAGCCAAATTACTCAATTTTTT AATGAGATAGATGTTTTTTTTTGCTCACAAAGTCTTGAATATGAAAGATT ATTTCAAGAACATGAAATTTTGGTTTCTAAACATTTTTTTTATAACAAAC AAACGACTAATTTTGATAGATCGTCACTATTTGTGTTCTGAATGATTATT TAACGGTCATGATCACGTAGATATCAATTATATTTGTTAAATGCATAACC AGGTAGGTCCATAAAAGTATCACTTGTTTTTTTTTTATTTATTCTTTATT TAGAGTATAGGGTACTAAAAAATCTAGATTTTACAAATGAATGTAAAGTC TAATTAACAACAGTCTAATTACAGCCCTCCAAAGCCCCCCATAGCCCTTC GCACCCCTTCAGATACCCTCTGCCTTGCTCTGCCTCAAAGCCAGCATCTT CCATTAGTGCTCCAAAGCCTTTAAAAGGCTTGAAAATTGGCGAAAATTGG TCAAAATTAGAAAAAATGACCTCCTTTGGGTACCACCTGGTACCACCGTG GACGGCCCCTGGAGGTCCCGGCCTAGGTTTCGGGGAGTTCGATTGGTGCC CACTGGTCAGGGTGTGAGGGTACACGTCTGCACCAGCGAGGGTGCTTCAA AGTTCCTCAAAGTGTCGTCAATGGCCGGCAAAAAGTGCGACCAAATTACG TGCATGTGGAGCCTTCAGTTGCTCGGGTTTTCTCAAATTTTTGTTTGATT AAACTTGACAAAATTCGATTAAGTTCAATTAGTTTGATTAAGTTTGATTA ATGTAATCAAACTAAACGAACTATCCAGGTCTCTTTAAAAAAATTAATCA AACTTAATCGAACTTTGTATTTTGAGAAATTTGTGAATATTCGATTAAAG TTCAACAACCGAACTTAGTCGAACATTAATCGGCCAACAAAGTTCGATTA AGTTCGACAAAGCTCGATTAAAAATACCATTTGATTAGTTCGATTAATTA CGTCTGGTTTCAGGTGCAAGTTCAGATGGTTTCGGATTTTTAAAAGTAAT TTTTTCAATTTTTCGTTGCTCAATAACATGAAAAGTTCTAAAATAATATG TTAAAAGATCCTGCATCGATGCCGAAACACAGACAGAAAGTGATAACAAA ACCCCCGTTGTAAATTTGTTTACACATGACTTGATTTTGCTCCCAATTTT GCTATCTGCATTTCCAACAAAAACCAGTTGAAAACAAAACTAAACAAGGC AATGTGGGCCTACTTATTGCGAGGTTGTCAAATACCACGTGTTCAATAAT AAAATCAATTTTTATTTCCAAAAACAGGTCAGCCAGGGCGGGCAGGCTAG GGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGT CTATCCGTGTTTAAATAACTTGGTTAGGTATTCAGAATTAAGGATTAGGG ATTCGCAATTAGGGATTAGGGATTCGCAATTAAGGATTAGGGATTCAGAC AAATTTCCATGGTTTTGAGCTGCTACTGTTTTCTACTTTAAATATTGAGT TTGAATTCAGTTCAATACTTCAAAGAAAAATAACCAACCTAGGCTCTGTT TAATTAAGTTGGGAACTATTTAAAAAAAAAAGAGTTAACCTCAGAATGGG CTTTTTCTGTTAATAAGGGCCTGTAAAGCAACTAATCAAGTTGGTCTCAC CTTAGATTAGAATAAAAACAAGATGAGTTCAACAGAAGATCTAACATCGA AATACCAAAGACTTGGGCAGGAATACCAAAAGGTAATTATTCGTTTTAGT TCTAGATTAATTAATTATTTTTTTTATCTATATTACCTAAATTATTTATC AAGTTTATTTTGATGTATATTTTTTCATATAATCCATCTATTTAAAATTT TCCAGGCAGTTTTTTTCAGGTATATTACAGAGTAATCCTAAATTCAGAAA GAGACTTCATAATAACTTTGATTATATGGCATTTCTATTATATATTTTTT CAGGCAAGAGCGCAAATCACTGTTTTGAAAAAGGGTGTGGTTGATGAGCA AACATCAAATAAAGTTTTGCAGGTATAAACCAAACTTTTACATCATGAAT GATAACCTCTGGATACGCTCAAATCAACTTTAGATTAGCCCATTAATCTT AAGCAAAAAAGTACTTATATATTGACAATAATCTCTGCCGCATCTTTGAA TAAATTGAAATAGTAAGATGATTTTAAATAGTAACTATTCATTATGGGGT TTAATTTTCATTTGAACTCTGGTTGGAATTTGAAAACAAACAAACAAAAA AGCTTGAAGTCAATATAGAAGAGCAAGTGACCTGTCTTTCTCATACTTTA TTGTGAAAAACTGAAAGGACTTTATGAATAATAGTGTACTTTAAATAATA TGAGACAAACAAATCTGAAAATTAAAAACTGGAAACAGATTCTATCTGAA TGTCGGAACGTTTTGCTAAGCCTGAAAATTTCAAAAAATTGAGAATAAAC ATTTACTTATTCTGTTCACTAAAACTAAGTTTCTCTTCATTTTTCTTATC ACAGGATGCCTTGAAACAGAAGGATCAGACAACAAGAAAATATGAACAAG ATATTGATAGTTTGCAGTTTCGTAATTCACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033124XLOC_033124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052399-exon-scaffold_213-1575043694:1339313..1339548TCONS_00052399-exon-scaffold_213-1575043694:1339313..1339548Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1575043694:1335317..1335393TCONS_00052399-exon-scaffold_213-1575043694:1335317..1335393Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1575043694:1335027..1335095TCONS_00052399-exon-scaffold_213-1575043694:1335027..1335095Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1575043694:1334464..1334544TCONS_00052399-exon-scaffold_213-1575043694:1334464..1334544Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1510915933:1339313..1339548TCONS_00052399-exon-scaffold_213-1510915933:1339313..1339548Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1510915933:1335317..1335393TCONS_00052399-exon-scaffold_213-1510915933:1335317..1335393Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1510915933:1335027..1335095TCONS_00052399-exon-scaffold_213-1510915933:1335027..1335095Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1510915933:1334464..1334544TCONS_00052399-exon-scaffold_213-1510915933:1334464..1334544Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1491911889:1339313..1339548TCONS_00052399-exon-scaffold_213-1491911889:1339313..1339548Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1491911889:1335317..1335393TCONS_00052399-exon-scaffold_213-1491911889:1335317..1335393Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1491911889:1335027..1335095TCONS_00052399-exon-scaffold_213-1491911889:1335027..1335095Clytia hemisphaericaexon
TCONS_00052399-exon-scaffold_213-1491911889:1334464..1334544TCONS_00052399-exon-scaffold_213-1491911889:1334464..1334544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1334464..1339548 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55327 3.91047 2.83568 2.73946 6.5581 6.30888 4.34937 8.14366 1.24334 4.39072 1.58402 0.99725 2.66516 1.57561 2.09742 3.63076 3.40794 2.30905 1.86594 2.67289 2.49495 2.26268 8.40247 5.16743 6.52329 8.71186 1.69267 2.9484 2.94914 3.64083
Blast
BLAST of TCONS_00052399 vs. Swiss-Prot (Human)
Match: PPR21 (Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens GN=PPP1R21 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.053e-16
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  254 MSSTEDLTSKYQRLGQEYQKARAQITVLKKGVVDEQTSNKVLQDALKQKDQTTRKYEQDIDSLQFRNSQV 463
            M+S E L  KYQ+L QEY K RAQ  VLKKGVVDEQ ++  L++ LK KDQ+ RK +Q++DSL FRN Q+
Sbjct:    1 MASAE-LQGKYQKLAQEYSKLRAQNQVLKKGVVDEQANSAALKEQLKMKDQSLRKLQQEMDSLTFRNLQL 69          
The following BLAST results are available for this feature:
BLAST of TCONS_00052399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPR211.053e-1658.57Protein phosphatase 1 regulatory subunit 21 OS=Hom... [more]
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