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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052399 ID=TCONS_00052399|Name=TCONS_00052399|organism=Clytia hemisphaerica|type=transcript|length=463bp
CGAAAAAATAGGAAATAAAGCATAACGTTGGTACTGGCTAGAGGCTCGAC
AGGCGCCAAGAGACAGCACAGCGACGGCAGTTGGCCCAATCGGGCCAATT
ATCATCAAGTTCTATTCCTGCCTGAGATGTGAGTGCTCATGCTTATTTTT
TGGTTTGGAATTCTGTCCACAGACTGGTAAAGCTCATCCTGGCATAAAAT
CAAATCCCAAGCAGAGTGAACAGCAATAAGAATTAGATTAGAATAAAAAC
AAGATGAGTTCAACAGAAGATCTAACATCGAAATACCAAAGACTTGGGCA
GGAATACCAAAAGgCAAGAGCGCAAATCACTGTTTTGAAAAAGGGTGTGG
TTGATGAGCAAACATCAAATAAAGTTTTGCAGGATGCCTTGAAACAGAAG
GATCAGACAACAAGAAAATATGAACAAGATATTGATAGTTTGCAGTTTCG
TAATTCACAGGTA Run BLAST on NCBI transcript from alignment at scaffold_213:1334464..1339548- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052399 ID=TCONS_00052399|Name=TCONS_00052399|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at scaffold_213:1334464..1339548- (Clytia hemisphaerica)
CGAAAAAATAGGAAATAAAGCATAACGTTGGTACTGGCTAGAGGCTCGAC
AGGCGCCAAGAGACAGCACAGCGACGGCAGTTGGCCCAATCGGGCCAATT
ATCATCAAGTTCTATTCCTGCCTGAGATGTGAGTGCTCATGCTTATTTTT
TGGTTTGGAATTCTGTCCACAGACTGGTAAAGCTCATCCTGGCATAAAAT
CAAATCCCAAGCAGAGTGAACAGCAATAAGAATTAGGTATTAAGTATACT
TTTCTTTTCTTTTAGCTAGTTTTAGAGATATACCGTGAGATTGGGTAACT
TGCATCAGTGGAGGCTAACATGCATAGCGGGCATAGCCCTCAAATGAAAG
ACCTGGCTGGTCATTAAAATACAACTCTCGCAGCTCTACTCTATACCATT
TTTGTTTTGATTTAACTTTGTATTTTAATGACCAGTCAGGTCTTTCATTT
GAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAAATCTCACG
GTATCTGTAGCTATCTATTTTTCATTGCATCATCATCAGTTGTCCTCATA
TCCATCAGGACCTTCCTCCTGTCTAGTTTGCAAAGAATGGCACATTTGCT
TGCTCAAGATCTCGAGTGCATAACTCGGAAAAAGTTGAGTGCAATTCGTT
TGATATTCGTTTGATATTCTCAAATTTGTGTTTTACACAACATACTCTAT
TGGCTTCCAATAGTTTGCAGACCCAAACTTAACCGCTTCACACACAGAGG
CCCAAGTTGTCATATTCGCATAATTAAGATTTTGCGGTGTAGCAATTTTA
GAGAGAGCACACTGTTTTTGTGACTACTTTTGGAATTGGAAACTATTTGA
AGCCAATAGAGTATGTTACCAAGAAGAGTAATTGTGTAAAATTTGACCAC
TCAACCAGCAAAAATCGCCAGTGAGACCAATTGAGGCCTCTACATTTTTT
TTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTGTGTTTGTTC
GTCCGTTTGTCCGTCCGTTCCTTCGTTCGTTCGTCTGTTACCAACTTTTC
TCAGGATTGAATGATAGGAATCTTTGGTGGTCTAAAATGGTGGTACCCAA
AATGTGACGGAGCCTGATTTTCGAAAAAAAAAATTTTGGGGCAAATTTGG
GCCAAAAAACAGCTAAAAAACGGGTTTTTTAGACTTTATGAAAAATTGGA
TCATTAATTTTTTCTGATTTTTTGTATGAAAGTAGGGTACCATAGTTAAA
AGATGGCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAAAG
CATGTTTATCTATAAGAATCACTATTAACAAGCATACATCAATGTTCTTA
GTCAAATTACTGAATTTTTTTATGAGATAGATGTTTTTTTTGCTCACGAG
GGCTTACATTTGAAGCATATGTGTGTTTAGACATGAAATTTTGGTTGCTT
GGCGTGTTTTTATATAAAAACTGGCCAAATTCGATATTTTTTTATAAGCA
CATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATT
CTTAATGATTTTTTGCACAAAGATGCATAACTTTAAACCCTTATTTGTGA
CGGAGCCTGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTTGGCCAAAA
ACGGCTAAAAAAAAGGTTTTTTGGACTTTGTGAAAAATTGAATCATTGTT
TTTTTTTCTGATTTTTTACATGAAAGTAGGTAAAAGATGGCTCAAGCAGA
TTTTTATAAAAAAAGAATTTTTCAGCTCGAAAAAGGCATCTTTATTACAA
GAATCACAATTAATAAGCATACATCAATGTTCTCGGTAAAAACATTGTGA
ATTTTGATATCAGAAGTGAAATATCGGGAGGTCGTCAGTAGTCCGACACT
TTCTAGTCCGACAGTAAAAATGTCCGACGTTGGATTTGACGAAAGTGTCA
GTATTCCGACAACAATTTTGTCCGACAACGAGTCAAAAAAAAACATATAA
AAATCGAAATATGAATCGTGGAAGAGGAAACACATTTTTTCCTAATTTGA
GGTTAGGCCCCTAAACCCGACTTGTCTTAAATTTTGGAAAGCTTGTTAGG
ATTAGGCTTTCAAGAGTCAAGAGATTGGATTTAGCTGTTTTTACGACCCT
TCTTTAGTGATTTACAACCCTGATTGGTCCTTTATTTCTACTTATGCCAA
AATGTCGCCAAAATAAACTTTTATTAATATTATCTCAGAGAAAAACCCTT
ATTCAACATTCGACACTCTAAAATCTTGCGTTTTCGGACAAAAGTGACGT
CGGAAAAAAAGACTTCCAAATTGTAAATTTATTTTATAGATTCGGACTAT
TTTACTGTCGGACTAGAAAATGTCGGACTAGTGACATGCACCCGAAATAT
CAACGATGTAACTTCATTTTATTTTTATTTTACTTGACAATATATTTCGA
TACTTTTTCGATACTACATCAATGTTCTTAGCCAAATTACTCAATTTTTT
AATGAGATAGATGTTTTTTTTTGCTCACAAAGTCTTGAATATGAAAGATT
ATTTCAAGAACATGAAATTTTGGTTTCTAAACATTTTTTTTATAACAAAC
AAACGACTAATTTTGATAGATCGTCACTATTTGTGTTCTGAATGATTATT
TAACGGTCATGATCACGTAGATATCAATTATATTTGTTAAATGCATAACC
AGGTAGGTCCATAAAAGTATCACTTGTTTTTTTTTTATTTATTCTTTATT
TAGAGTATAGGGTACTAAAAAATCTAGATTTTACAAATGAATGTAAAGTC
TAATTAACAACAGTCTAATTACAGCCCTCCAAAGCCCCCCATAGCCCTTC
GCACCCCTTCAGATACCCTCTGCCTTGCTCTGCCTCAAAGCCAGCATCTT
CCATTAGTGCTCCAAAGCCTTTAAAAGGCTTGAAAATTGGCGAAAATTGG
TCAAAATTAGAAAAAATGACCTCCTTTGGGTACCACCTGGTACCACCGTG
GACGGCCCCTGGAGGTCCCGGCCTAGGTTTCGGGGAGTTCGATTGGTGCC
CACTGGTCAGGGTGTGAGGGTACACGTCTGCACCAGCGAGGGTGCTTCAA
AGTTCCTCAAAGTGTCGTCAATGGCCGGCAAAAAGTGCGACCAAATTACG
TGCATGTGGAGCCTTCAGTTGCTCGGGTTTTCTCAAATTTTTGTTTGATT
AAACTTGACAAAATTCGATTAAGTTCAATTAGTTTGATTAAGTTTGATTA
ATGTAATCAAACTAAACGAACTATCCAGGTCTCTTTAAAAAAATTAATCA
AACTTAATCGAACTTTGTATTTTGAGAAATTTGTGAATATTCGATTAAAG
TTCAACAACCGAACTTAGTCGAACATTAATCGGCCAACAAAGTTCGATTA
AGTTCGACAAAGCTCGATTAAAAATACCATTTGATTAGTTCGATTAATTA
CGTCTGGTTTCAGGTGCAAGTTCAGATGGTTTCGGATTTTTAAAAGTAAT
TTTTTCAATTTTTCGTTGCTCAATAACATGAAAAGTTCTAAAATAATATG
TTAAAAGATCCTGCATCGATGCCGAAACACAGACAGAAAGTGATAACAAA
ACCCCCGTTGTAAATTTGTTTACACATGACTTGATTTTGCTCCCAATTTT
GCTATCTGCATTTCCAACAAAAACCAGTTGAAAACAAAACTAAACAAGGC
AATGTGGGCCTACTTATTGCGAGGTTGTCAAATACCACGTGTTCAATAAT
AAAATCAATTTTTATTTCCAAAAACAGGTCAGCCAGGGCGGGCAGGCTAG
GGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGT
CTATCCGTGTTTAAATAACTTGGTTAGGTATTCAGAATTAAGGATTAGGG
ATTCGCAATTAGGGATTAGGGATTCGCAATTAAGGATTAGGGATTCAGAC
AAATTTCCATGGTTTTGAGCTGCTACTGTTTTCTACTTTAAATATTGAGT
TTGAATTCAGTTCAATACTTCAAAGAAAAATAACCAACCTAGGCTCTGTT
TAATTAAGTTGGGAACTATTTAAAAAAAAAAGAGTTAACCTCAGAATGGG
CTTTTTCTGTTAATAAGGGCCTGTAAAGCAACTAATCAAGTTGGTCTCAC
CTTAGATTAGAATAAAAACAAGATGAGTTCAACAGAAGATCTAACATCGA
AATACCAAAGACTTGGGCAGGAATACCAAAAGGTAATTATTCGTTTTAGT
TCTAGATTAATTAATTATTTTTTTTATCTATATTACCTAAATTATTTATC
AAGTTTATTTTGATGTATATTTTTTCATATAATCCATCTATTTAAAATTT
TCCAGGCAGTTTTTTTCAGGTATATTACAGAGTAATCCTAAATTCAGAAA
GAGACTTCATAATAACTTTGATTATATGGCATTTCTATTATATATTTTTT
CAGGCAAGAGCGCAAATCACTGTTTTGAAAAAGGGTGTGGTTGATGAGCA
AACATCAAATAAAGTTTTGCAGGTATAAACCAAACTTTTACATCATGAAT
GATAACCTCTGGATACGCTCAAATCAACTTTAGATTAGCCCATTAATCTT
AAGCAAAAAAGTACTTATATATTGACAATAATCTCTGCCGCATCTTTGAA
TAAATTGAAATAGTAAGATGATTTTAAATAGTAACTATTCATTATGGGGT
TTAATTTTCATTTGAACTCTGGTTGGAATTTGAAAACAAACAAACAAAAA
AGCTTGAAGTCAATATAGAAGAGCAAGTGACCTGTCTTTCTCATACTTTA
TTGTGAAAAACTGAAAGGACTTTATGAATAATAGTGTACTTTAAATAATA
TGAGACAAACAAATCTGAAAATTAAAAACTGGAAACAGATTCTATCTGAA
TGTCGGAACGTTTTGCTAAGCCTGAAAATTTCAAAAAATTGAGAATAAAC
ATTTACTTATTCTGTTCACTAAAACTAAGTTTCTCTTCATTTTTCTTATC
ACAGGATGCCTTGAAACAGAAGGATCAGACAACAAGAAAATATGAACAAG
ATATTGATAGTTTGCAGTTTCGTAATTCACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052399-exon-scaffold_213-1575043694:1339313..1339548 | TCONS_00052399-exon-scaffold_213-1575043694:1339313..1339548 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1575043694:1335317..1335393 | TCONS_00052399-exon-scaffold_213-1575043694:1335317..1335393 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1575043694:1335027..1335095 | TCONS_00052399-exon-scaffold_213-1575043694:1335027..1335095 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1575043694:1334464..1334544 | TCONS_00052399-exon-scaffold_213-1575043694:1334464..1334544 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1510915933:1339313..1339548 | TCONS_00052399-exon-scaffold_213-1510915933:1339313..1339548 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1510915933:1335317..1335393 | TCONS_00052399-exon-scaffold_213-1510915933:1335317..1335393 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1510915933:1335027..1335095 | TCONS_00052399-exon-scaffold_213-1510915933:1335027..1335095 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1510915933:1334464..1334544 | TCONS_00052399-exon-scaffold_213-1510915933:1334464..1334544 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1491911889:1339313..1339548 | TCONS_00052399-exon-scaffold_213-1491911889:1339313..1339548 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1491911889:1335317..1335393 | TCONS_00052399-exon-scaffold_213-1491911889:1335317..1335393 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1491911889:1335027..1335095 | TCONS_00052399-exon-scaffold_213-1491911889:1335027..1335095 | Clytia hemisphaerica | exon |
| TCONS_00052399-exon-scaffold_213-1491911889:1334464..1334544 | TCONS_00052399-exon-scaffold_213-1491911889:1334464..1334544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1334464..1339548 - |
Blast
BLAST of TCONS_00052399 vs. Swiss-Prot (Human)
Match: PPR21 (Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens GN=PPP1R21 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.053e-16 Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 2
Query: 254 MSSTEDLTSKYQRLGQEYQKARAQITVLKKGVVDEQTSNKVLQDALKQKDQTTRKYEQDIDSLQFRNSQV 463
M+S E L KYQ+L QEY K RAQ VLKKGVVDEQ ++ L++ LK KDQ+ RK +Q++DSL FRN Q+
Sbjct: 1 MASAE-LQGKYQKLAQEYSKLRAQNQVLKKGVVDEQANSAALKEQLKMKDQSLRKLQQEMDSLTFRNLQL 69
The following BLAST results are available for this feature:
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