TCONS_00052396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052396
Unique NameTCONS_00052396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052396 ID=TCONS_00052396|Name=TCONS_00052396|organism=Clytia hemisphaerica|type=transcript|length=1783bp
AAATTCTCATTGTtactcaattttagaaaaatagacAAAAGAACAACAAC
TTCAAATagaaagatcaaaacaaacgataaacaaaaagaaacacacaaat
tattaaaaaaaagaaaaataatattagaaataaaatacagaccagaaata
TGGCATCTTCACAACAATCAGAAAATAATGGTGTAAAATACAGACCACGA
GAAGAAATAGTATATCAGCAATTCTTACAAGCTGATCTGGAAGTCCAAAC
CATAGATTGGAAAGATGATAAGGTAGAAGACAATGAAGAGGTGAAGTGTA
CTCCAGACGATTCGAACGAAGTCTGTGATTCCAAACGACCTCGTGTACCG
TCCGCGTCAAATAGTGGCTCATCCTCTGAATCCTGTAAATCtaagaaaaa
gaaatgtaaaATTGTCGTCGAAGCCTATCCAACAAGGACGAAATGTGAGC
CACAAACATACTCAACAAAATCGAAATCTTCAGAAATAACAACACAGTAT
AAACGAGATGTATTCGGCGGTGGTTGTTCTTCACTCTGTCTCAAAGaccA
AACCAACCATTTTGCAAGCTTATTTGACGAACTTGTATTgataattttca
aacatttctcAAGAACGACTATTCTAAATTGTATGCGAGTCAGTAAAAGA
TGGAACAGACTAGGGTCAGACTCCAGTTTGTGGAAGTCCGTGAATTGTGA
CTCTAAACATTTCATTATGGAGGGCCAACTTGGTAAAATACTGCATCGAG
GTGTGGAATCGCTACGGCTGAGTAAAGCAGAAGTACTGGCTAACATTTGT
ATAGAAGACTGTGCATTACTGAAAGATGAAATAGAATGTGAATTCCAACT
AAAACAGTTAGACTGTTCAATGTCCAAGTTCAAAGATGAAGCATTGTCAA
CTTTAATACtgAATTGCAAACAACTTGAAAACTTGTCATTCGAGAGCTGC
AAACTTAATCCGACGGTACTAAGtgGTGTTGGACTTAATAGGAATCTACG
CGTATTGAATTTGGCTTTGTGTGTCGGATTGAACATTGGTTCATTGGATA
TGATCACGAGACAATGTCAACAAATCACGTCATTGAATTTATCATGGACC
AATCAGACAAGGGATGCCATACGAACGATTTGTCGATGCCGTGAACTTCG
TGAATTGAACTTGAGTGGGTTGCGTGGTGGCGTGAATCGAAAATACATGG
AACTACTTGTCAAGAATTGTAACAAATTAATGCAACTTGATTTAAGTGAC
GTAGCATTACAGATCGGATCGTTAAAACTAATCGCCGACAATTTAACGTC
ATTAACGACATTATCCATCAGCCGTTGTTCTGATGTTCGTTCTGAGCAGC
TCTTtgaTCTGAAGGAGCTTCGTTCGCTTTCACATCTCAACCTGTTTGGG
TTCCTTAACATGAGCGCTCTTGAACTTTTCTCGGAAACTCGACCTGACGT
TCATATTAACAAACACACATTCTCACCGATCGCGCGGCCGATTTCGTCCG
CTTCATACGAAGGACGTTTATGGGAGCAATATGTTGGTTTCATTATTTGA
AGCGTTTTCATCATTGGCTGTTTTGGTAACCTTACGTGATTTCAATGTAT
CGAGTGTGGGAAAGTAATGTCAGATCTCGGAGCTCGGAGCATTATGCTCT
TTCCAATGAGTTTAAAGATTGCTGAGCCAATTTTACAAAGTCGGAACCAT
TATTCTGTGTTTGATAACATTATGTCATTTTGACGAATCCATTTTGAAAA
AGGACTTCTTGAATTCAGTAGTCATCCACCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_213:1291593..1301352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052396 ID=TCONS_00052396|Name=TCONS_00052396|organism=Clytia hemisphaerica|type=transcript|length=9760bp|location=Sequence derived from alignment at scaffold_213:1291593..1301352- (Clytia hemisphaerica)
AAATTCTCATTGTTACTCAATTTTAGAAAAATAGACAAAAGAACAACAAC
TTCAAATAGAAAGATCAAAACAAACGATAAACAAAAAGAAACACACAAAT
TATTAAAAAAAAGAAAAATAATATTAGAAATAAAATACAGACCAGAAATA
TGGCATCTTCACAACAATCAGAAAATAATGGTGTAAAATACAGACCACGA
GAAGAAATAGTATATCAGCAATTCTTACAAGCTGATCTGGAAGTCCAAAC
CATAGATTGGAAAGATGATAAGGTAACATGATATTTTTTTATCATCGATA
CTACTCAGTTTGATTTTATTGCAATTTGATTTCTTTTCCTGTATATGATC
GATGGATTTTGATTTTTAAATCTAATTTCGATCTGAGCATCATCGTTTGT
CAAAGAATCCAAGGGTCACTGTTAAGTACAGTTGACTGTCACTTTCTTAT
TTTTTTGCAAGAGTTGAATTTGAAAGATGAAAAGAAGGTAACAAGATATT
TTTTTACTCTATATGGACTTTAAATTTTACATTTAGTAGCGATTGAAAAA
ACATGGTTGCTCAAGGATTCCAGAGACCACTGCTCAATTCTTAAGTCGCA
TTTTTTGACTGAAAGAAACTCGATAATTCAATTCAATTTTTGATAGGTTC
TCGCTAATTCGAACTTGAAAGGGAAATTCCATTTCACCGAATTACACAGA
GATTCGAATTAAACAAAATAATTTTAAGGGTATATTAAATATTTTTTATG
GGAAATGAGAACTTTCTCCTATTAAAAGTTTTATCTTTACATAAGTGTTT
CCGTTTCATATCAGACACATATTTCAAATCAGGACAGTGTCTTGCTATTG
TTATATTATGCTGGTATAAGCAAAAAATGTTTTTCTTTTCCTCTTTCTGA
TCAATCTTGCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAAT
TGAAATTGATGAGTAAGCAAAATGATATCACTGTTATTTAAAAACAAAAC
CTTTAAGGGAAGGTTAGAATAATGAAGGTTCGGACAGCCCTTTCTGTTCG
AATGTTACGTCACAATCTTTGACGAATCAGATGGCTAAAGATAGATCACG
TGACGTTCGAAAATCTATCCCACCTCACCTAGCTGGGCAAGCCCGTCTCC
ATCTGAACATTCCCTAAAAAAGCTGACTGAAACTTACTTTTTCTCAACAT
TTCAGGTAGAAGACAATGAAGAGGTGAAGTGTACTCCAGACGATTCGAAC
GAAGTCTGTGATTCCAAACGACCTCGTGTACCGTCCGCGTCAAATAGTGG
CTCATCCTCTGAATCCTGTAAATCTAAGAAAAAGAAATGTAAAATTGTCG
TCGAAGTAAGTTCATGTTCATGATAATTCCCATCTTCCGACAAAATTCCC
TTCCCAGCCGGCACACAACGTTTTTTCAACGTTTTTCTAACGTTCACAAC
GTCCATATAACGTTAGATGAACGTTGAAACAACGTTATGTGGCGGCTGGG
TTAGTTGTATCCAACAGTTTAAGGTAGTTTTTCGTCTCTTAAATATTCTG
ACTCCATGCTACTAGTAGGGGGAATTTTGTTCGATTTTTTGGAATCGCTT
GACTGTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGT
AGGGGAATCGAAATTACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CTAACTCGAGATATTAACCCTTGAAAACCGTGTTTTTCAGCCAGAAACAG
CTATTTTGTCCAGTTTTTGCGCTTTTTGAAGCTCAATATCTCGAGTTACA
TTACAAAATGCCCTCTACTAAGCAAAGGATTTGAAAAATTCAACTGTTTA
ACTCTGTCCCTGGCTGAAGCAAAATAATATGCCCTCTTTAAAAGTTTGGT
GCCGTCAATTTGATCAATCAAGACCATTCTCTCGTTTCCCGCCATGTCAG
TTATTTGTTTGATTGAACAAATTGCCGGTATCGAGCTGTGGTTCTACTCA
GCAAAGATTACGCATTATTTTGCTTTAATTGCCATGGCATGAGAAAGACA
GAGATGTTCTATCTAGTGTTTAATAAGATGTCTGTGTTTACACCAGGCTN
ATGAGAAAGACAGAGATTCTCTATCAAGTGTTTAATAAGATGTATTTGTT
TACACCAGGCCTATCCAACAAGGACGAAATGTGAGCCACAAACATACTCA
ACAAAATCGAAATCTTCAGAAATAACAACACAGTATAAACGAGATGTATT
CGGCGGTGGTTGTTCTTCACTCTGTCTCAAAGGTAACCAAAAAAATATTT
GTTTTAAGGGAATTAAGGTCTCACTACTCTTACTAATCCTGCTTTCTTAT
TTTAATGAAAAATCTATTTTTACATTTGCTGTTGTTTTTCACTTTCAAGA
AAAAGAGATTTATGCATTTCACCTTTCATTTATTTAGTAGCCAAACATTG
TCAGAAAATTTTGCGTCAATGCAATGAATTGAGGCATTTGACGTTATGTA
ATTCTGCTAATCTGCAAACTACGCATTATTTCATATAGTCAGCTGTGGTC
TAAAAAGAATTGACCGGGTGCGAACAATCCAAAACCAATCTTTTTGATCG
AAAAATTTAGCCCAAATTCCTAAAAATCATCAACCAGACCTATCCAAATT
ATTTACCTGACGTCCCCGGTAACATTTTAGGTCACAGATGATGTCATATA
GACCCAACCTATTTAAAAAATTTTCGTGAGCAAACATGATCAATAATACA
GCCTAGCTCCTGTACAATGATTGAGTGCAAATCTCTATAATATACCACAG
AGATCCTCTCATTTCGCTCCTTCACTCAAACTTTCATATTTTTTTTTTTT
TAGACCAAACCAACCATTTTGCAAGCTTATTTGACGAACTTGTATTGATA
ATTTTCAAACATTTCTCAAGAACGACTATTCTAAATTGTATGCGAGTCAG
TAAAAGATGGAACAGACTAGGGTAGGAAAACAACTTTGTCATTTAGTACC
AGTCTTTTTTGTGGTTGTAACCACTGACCATTATTAACCCAATACTAAGC
TATATCCGCCACTTTTTGAAAGTGGTACCCACGGAAAAACTTTGTCTGGC
GTCAAACGGCGCTACATCACAACTATTTAAGAAAAAATAAATCTAGCGCC
CTTGGTGTATTTGTACCACTTTTGAAACCACTTTCAAAGAAACTCCGATA
AAAGATTTTGGTCTGCTAAGATTGAAAAAATATCCACAGAGTTAATATAA
AGCTCAGTAGATGTAATAGGCAGAAAGATACACAACGTTGTTTCAACGTT
CATGAAACGTTATTATGGCCGTTGGGTGAACGTCTGAACAACGTTGGTAC
GGTTCGGTAAAATGTCAGTTGTTCTTCAGCCTCATCCTTTGCTGAGAGTC
TTAAACTTTAAACAAAAGAAAATCTACCCAATTTACCTAGAGGTTAACGA
GTTATAGTATTTTTCAAAACAGACGGGATATATAAGGGGTTAGGTACCTT
AGCTAGGTATAAAAGAGGATATCTTGGGGAATATGCACTAGGTTGCTATG
CCTTCCAATATTAGTATCATCATTATGTTTTTTCAACGTTTTGTTTGTTT
CTAGGTCAGACTCCAGTTTGTGGAAGTCCGTGAATTGTGACTCTAAACAT
TTCATTATGGAGGGCCAACTTGGTAAAATACTGCATCGAGGTGTGGAATC
GCTACGGCTGAGTAAAGCAGAAGTAAGTATTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCCTATTCTTGTTCATTTGCTCGCTTGTTTTTTTAACGATA
CTTTGTTCATTTCTGCTTTTTAACCTTTTCCATTCCAATAACGCGTTCTG
TTACGTCGTATATAACAAAACTTGTTCACCATAGTGTGTGTTCTTTCTTT
TGATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTTTCTCCTTTT
GATAGGCACTGGCTAACAAGCTTGCTCACCATAGTGTGTGTTCTTTCTTT
TGATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTGTTCTTTCTT
TTGATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTTTCTCCTTT
TGATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTTCTTTCTTTT
GATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTTTCTCCTTTTG
ATAGGCACTGGCTAACAAGCTCGTTCCCCATAGTGTGCTCTTTCTTTTGA
TAGGTACTGGCTAACAAGCTTATTCACCATAGTGTGTGCTCTTTCTTTTG
ATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTGTTCTTTCTTTT
GATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTGTTCTTTCTTT
TGATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTTTCTCCTTTT
GATAGGTACTGGCTAACAAGCTTGCTCACCATAGTGTGTGTTCTTTCTTT
TGATAGGTACTGGCTAACAAGCTTATTCACCATAGTGTGTGTTCTTTCTT
TTGATAGGTACTGGCTAACAAACTTGTTCACCATAGTGTGTGTTCTTTCT
TTTGATAGGTACTGGCTAACATTTGTATAGAAGACTGTGCATTACTGAAA
GATGAAATAGAGTAAGTGCAATCTAAAGAGGCTTTCGGATATCTTTTTAT
GTAAATAGACTGTAAATTCTATTGGATGGTCAGGAGATATAACTACAAGA
GCATTGCCTTCATCAAAAAGAATGTTTCAATTCTTTTAGCTGTGCTGCAT
CACATCATATTCTTCGATTTCAGTCTTTTCATGAAACTAGACTTTTAGAA
TTCTGTGGGAGATTGCAAAGGAAACTTCATTATGACCTTTTCATGAATTA
CATCACGAACATCAGTTGCCCCGTTTTGAAATTATTGTCATGGTGATTAA
CTCCCAGCGGATTTTCTTAAATCTACTTTCTATTTAAAATTAATAATTTA
ATGTCTCAAGGGACATAATCAACATGATAATTGGTTGAATACGAGGCAAG
TGATGTTCGTGACGTGATTTATGAAAAGGTCTATTGCCTCTTCAAAAAAA
AATGTTTCAATTCTTTCAGATGTGAATTCCAACTAAAACAGTTAGACTGT
TCAATGTCCAAGTTCAAAGATGAAGCATTGTCAACTTTAATACTGGTAAA
TTTCTTTTTGTTTATTGTTTAGGATTTTTACTGAGATTCCTAAAAAAGCT
GTAGTAATTTTGTTCATATCTGAACTTGATTCTCAGCCTCAAACTGCGAC
GGTATAAATTCCCTACAAATTTAGCGATGGGTTCTTCCAGAGAAAAACCG
TCCTTAGGGGGTGGAAGATATATTGTCCAGGGGTATCGAAAAAATCCTGA
AAAATTGCCATATCCATATCTGCTTGTCCAGGGGGTGAAAAATCGAAATG
TCCCGGATAGATCATTGAAAAAATAATATATCCTCCACCCCCCCCCCATG
AACGAATTTTTTTTCTGGAAGAGCCCAATGTATCAGGTCCAAAAACGTGT
ATCGCCAAATTTATTCTGCCGTAAAACTAAAGTATAAATAAAGAATAAAG
ATTTAGTAGTAAATTCTCCTAACCTTTTTTATCTTTCTCTCCGCCCTTTT
CCCACCCTCTATCCGCCCTCTTTATGTGCCTGTTGTGATTAAACCTGTCT
GTTTAGAATTGCAAACAACTTGAAAACTTGTCATTCGAGAGCTGCAAACT
TAATCCGACGGTACTAAGGTATATATACTCAATAGTATATTTCCTGTATA
CGTTGTTTATCTAACTCGTATTACACGCTTTTTTTATAAGAATATACTTT
CTAAGAATTTCATGATGAAATTTGCCAAAAAATTAAGAATATGCTAAGAA
TATCACTATCATGGAATTTCCAATCATAGATTGCCAATTACCCCCAAGTA
AGGCTCATTACTTTCACAAAAATGCCATTTTATGCTTTAGACGTATGTAT
TAAATGTCCTAACCTAAGAATGCTGTAAGAATATTTAAGGATGATTTTCC
CCAATAAAAGTTAAGAATGTTCATCATGAAATGAAAAAATAACCATTCTT
ATGAATGAAAAAGCGTGTATGATGTTATGGGTGATATAAATGATTCTTAA
AACCTTTTTAGAAATTAACGGAAATAATAATTTTTAAATCCATTCGGATC
ACTTAAGCAAATTTTCAAAATAAATATGTGGGAACCATTATTTGTACTCA
GTGGGAGATCCCAGTCAATCTACAAGAGAAATGGCTTTTCTTCCTCGGTT
TTTCTGGTACACCTCCGGAGGATTTTTTCAAAAATACCCTGGATTATATC
AAGTTATCAGTCATAATCAAACAGGTTTTATAAAACATTATTTTCTTCTT
TTTAGTGGTGTTGGACTTAATAGGAATCTACGCGTATTGAATTTGGCTTT
GTGTGTCGGATTGAACATTGGTTCATTGGATATGATCACGAGACAATGTC
AACAGTATGTAAAAAACCATTTTTCAGTTTTTAGTTAAAATTATCTTGTT
TCTCTAGTAGCTATTTTGAGGGGCTTTGTTATGAAAGACTATTTAAAAGT
TTTTTATTCTTTTAAAGACAGAATAGAAAGGGCCGCAAGAAACTCGAAAC
TTCTAATGATTACCGTAAGTTGGTCTAATGTCGACATCCCTTTTCTAATT
TCGACATCCTTCTTTAGAGATCAACTGATTGCTATAAAGCTATGAAAATT
AATTTCAATCAGCGATGTCGACATTAGACCAACTTACGGTACGGTAATAA
CCAACCTTTCTTTTTCAGAATCACGTCATTGAATTTATCATGGACCAATC
AGACAAGGGATGCCATACGAACGGTAACATTTATTTAGATTTGAATCCCA
ATCATTTGAAATTTTATTCGAATTACTGGTTATCGAAAGTAGATCTCTAT
CCCCCTTGTTGAAACTTCGAACGAACGGGATTTATCCACAGATTTATAAA
GCCCGAAGGGCTAGATGTAGTGCTTCGGCTGAAAAGTGCGCCGTGGTTAG
GTAGGAAATCCTACCTAGGTCACGTGACATTACAATAGAATTTCAGCGTT
TGACCAATCAAAAGCTTCGCGGGTTTTTGAAAACAATCTCAACAATATTT
TTCCGATATTCATTTCTTTGCCTGCTATGGCTAAAAGCACGATATCTAGC
CCTTTGGGCATTATAAACATTTGGATTTATCAGATAGAGAAAAGAGATTG
TTCAATGAACACTAGATGTTATAAAAGGTATAAGGAGCTGTTACTATAGA
AACGCTTGCAAATAAACTAGTGAAGATATAAGAAGTATAAATATTCAATT
CCTATCATTTTCAACCGTAGATTTGTCGATGCCGTGAACTTCGTGAATTG
AACTTGAGTGGGTTGCGTGGTGGCGTGAATCGAAAATGTAAGTCAATACT
ACCTTTAGCACACCCCCTTCTCACACCAGACTCGGTAGGATGTTTTCAAG
TCAGTGGGGGCAAAAATGACGGAATGAAACTCGATGAGGATTGATATCCC
CATACTTTTTATAGCCGGGGATTTAATTTATTTTGTTTTCAAGTCAGAAA
ATTCACTGGGATGGGAAAAATAGCACAATATTTTGCAGTGAGGATTGGTT
TATTTGATTATTTTCAGTGGGGACAAAAGTTGGAGGATAATTTCCCACCG
AAGACCGGCGATTTTTGTGAGAAGGGGGTGTTTCAGCCTTTTGCTTTCTT
TTCAAGTAAATGTAACAGATATAGACTGGATCACCGATCTCTATAATCCC
TGATAGTACAGGGTAGTATCATAGCATAAGAAAGTCAGTGCTAGTATGGA
TTCGCATTTGTTAGAGGGATAAAAGCTGCCATTAAAACTTAGACTGTACT
CCAAAATAATCTCTGATATGATATTTTCTGTTATTTCTAGACATGGAACT
ACTTGTCAAGAATTGTAACAAATTAATGCAACTTGATTTAAGGTAAGGAA
TCTAAATCCATGTTCATATTTTTTTAGAGATTTTTGGGAAAGTGTTTTTT
ATAATTGTTTGAAGTTTATATCTTTTAAATTTACATTTAAAGATTTTGAA
ATTGTCCAATCTTTTTCTTTCAGTGACGTAGCATTACAGATCGGATCGTT
AAAACTAATCGCCGACAATTTAACGTCATTAACGACATTATCCATCAGCC
GTTGTTCTGATGTTCGTTCTGAGCAGCTCTTGTAAGTTTGATCTCTCTAA
AGGGCTAATAAAAATTTCCATATACATAGAACATCAGAGAACATTTCTAT
TCCAAGCTTCAAAGCTTCTTAATCTCTTCCTTAATAAAAGCCTAATGTTC
CATTTATCCACCCAGTAATTTATATTACAGTTGACGCTCTCTTATTCGAC
GTTCTACTATTCGATAGGCTCCATTATTCGATGAAATTTAAAGTCCCTAC
CAACAAGAAACTCTCATAAACGACGTTCTACTATTCGATAAGCTCCCTTA
TTCGATGAAAATTCTATTCCCCTTGAAGATCGAATTAGAGAGCGTCAACT
GTATTTCAAAAAGTAGATGGCATCTTAAGGCCGGTTTCCACTTGCGCGCG
CTGCGATCGCACCTTTTGGCTTCAATCCTTTACTTGGAAAATGATTACGT
CATAGAAATGTAGCGCGCTCTCGAAAAAAAAAGTTGAAGACATTTCAACT
TCTTTCAACCGTTACGTCAGATCGCGCCAATGGAGTCGCTTCATTTTTCT
TTTGACCAATAGCGTGGAAGCTTTGCTCGAAAAAGTGCAGCGCAAATGGA
GACCGGCGTTTGAGTTTTATACACCCTTGATGCAGTTTCTTGATCCCAGT
CAAGCAAAATTTTTGATTAGAATTTTTAAAGTGATACTAAATGTGGGTGA
AAATATTTTAAACGCATTTCATTGAATCATAAATTAACCAGATCTAAAAA
CTCCAATCAAAGATGGCGGATATAAGTTAGTTCAGGTCAGTGATAGTAAC
AGCTAATATTCAATTATTATTTTTTTCATAGTGATCTGAAGGAGCTTCGT
TCGCTTTCACATCTCAACCTGTTTGGGTTCCTTAACATGAGCGCTCTTGA
ACTTTTCTCGGAAACTCGACCTGACGTTCATATTAACAAACACACATTCT
CACCGATCGCGCGGCCGATTTCGTCCGCTTCATACGAAGGACGTTTATGG
GAGCAATATGTTGGTTTCATTATTTGAAGCGTTTTCATCATTGGCTGTTT
TGGTAACCTTACGTGATTTCAATGTATCGAGTGTGGGAAAGTAATGTCAG
ATCTCGGAGCTCGGAGCATTATGCTCTTTCCAATGAGTTTAAAGATTGCT
GAGCCAATTTTACAAAGTCGGAACCATTATTCTGTGTTTGATAACATTAT
GTCATTTTGACGAATCCATTTTGAAAAAGGACTTCTTGAATTCAGTAGTC
ATCCACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033122XLOC_033122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052396-exon-scaffold_213-1575043694:1301081..1301352TCONS_00052396-exon-scaffold_213-1575043694:1301081..1301352Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1299998..1300147TCONS_00052396-exon-scaffold_213-1575043694:1299998..1300147Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1298771..1298894TCONS_00052396-exon-scaffold_213-1575043694:1298771..1298894Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1298082..1298199TCONS_00052396-exon-scaffold_213-1575043694:1298082..1298199Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1297331..1297448TCONS_00052396-exon-scaffold_213-1575043694:1297331..1297448Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1296392..1296444TCONS_00052396-exon-scaffold_213-1575043694:1296392..1296444Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1295858..1295933TCONS_00052396-exon-scaffold_213-1575043694:1295858..1295933Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1295285..1295346TCONS_00052396-exon-scaffold_213-1575043694:1295285..1295346Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1294549..1294647TCONS_00052396-exon-scaffold_213-1575043694:1294549..1294647Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1294180..1294234TCONS_00052396-exon-scaffold_213-1575043694:1294180..1294234Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1293616..1293682TCONS_00052396-exon-scaffold_213-1575043694:1293616..1293682Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1293061..1293112TCONS_00052396-exon-scaffold_213-1575043694:1293061..1293112Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1292822..1292929TCONS_00052396-exon-scaffold_213-1575043694:1292822..1292929Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1575043694:1291593..1292021TCONS_00052396-exon-scaffold_213-1575043694:1291593..1292021Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1301081..1301352TCONS_00052396-exon-scaffold_213-1510915933:1301081..1301352Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1299998..1300147TCONS_00052396-exon-scaffold_213-1510915933:1299998..1300147Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1298771..1298894TCONS_00052396-exon-scaffold_213-1510915933:1298771..1298894Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1298082..1298199TCONS_00052396-exon-scaffold_213-1510915933:1298082..1298199Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1297331..1297448TCONS_00052396-exon-scaffold_213-1510915933:1297331..1297448Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1296392..1296444TCONS_00052396-exon-scaffold_213-1510915933:1296392..1296444Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1295858..1295933TCONS_00052396-exon-scaffold_213-1510915933:1295858..1295933Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1295285..1295346TCONS_00052396-exon-scaffold_213-1510915933:1295285..1295346Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1294549..1294647TCONS_00052396-exon-scaffold_213-1510915933:1294549..1294647Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1294180..1294234TCONS_00052396-exon-scaffold_213-1510915933:1294180..1294234Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1293616..1293682TCONS_00052396-exon-scaffold_213-1510915933:1293616..1293682Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1293061..1293112TCONS_00052396-exon-scaffold_213-1510915933:1293061..1293112Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1292822..1292929TCONS_00052396-exon-scaffold_213-1510915933:1292822..1292929Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1510915933:1291593..1292021TCONS_00052396-exon-scaffold_213-1510915933:1291593..1292021Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1301081..1301352TCONS_00052396-exon-scaffold_213-1491911889:1301081..1301352Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1299998..1300147TCONS_00052396-exon-scaffold_213-1491911889:1299998..1300147Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1298771..1298894TCONS_00052396-exon-scaffold_213-1491911889:1298771..1298894Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1298082..1298199TCONS_00052396-exon-scaffold_213-1491911889:1298082..1298199Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1297331..1297448TCONS_00052396-exon-scaffold_213-1491911889:1297331..1297448Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1296392..1296444TCONS_00052396-exon-scaffold_213-1491911889:1296392..1296444Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1295858..1295933TCONS_00052396-exon-scaffold_213-1491911889:1295858..1295933Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1295285..1295346TCONS_00052396-exon-scaffold_213-1491911889:1295285..1295346Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1294549..1294647TCONS_00052396-exon-scaffold_213-1491911889:1294549..1294647Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1294180..1294234TCONS_00052396-exon-scaffold_213-1491911889:1294180..1294234Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1293616..1293682TCONS_00052396-exon-scaffold_213-1491911889:1293616..1293682Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1293061..1293112TCONS_00052396-exon-scaffold_213-1491911889:1293061..1293112Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1292822..1292929TCONS_00052396-exon-scaffold_213-1491911889:1292822..1292929Clytia hemisphaericaexon
TCONS_00052396-exon-scaffold_213-1491911889:1291593..1292021TCONS_00052396-exon-scaffold_213-1491911889:1291593..1292021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1291593..1301352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06296	2.92293	3.27333	3.53941	0.621192	1.32154	4.94536	6.16191	9.02812	17.983	16.1251	6.80382	8.65135	4.73771	14.9631	28.2938	10.4523	12.5339	8.11203	19.1271	7.26887	7.96297	15.6188	16.024	12.9455	9.74629	31.758	39.3145	6.5211	6.35362
Blast
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BLAST of TCONS_00052396 vs. Swiss-Prot (Human)
Match: SKP2 (S-phase kinase-associated protein 2 OS=Homo sapiens GN=SKP2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 7.979e-31
Identity = 97/322 (30.12%), Postives = 155/322 (48.14%), Query Frame = 3 
Query:  567 SLFDELVLIIFKHFSRTTILNCMRVSKRWNRLGSDSSLWKSVNCDSKHFIMEGQLGKILHRGVESLRLSKAEVLANICIEDCALLKDEIECEFQLKQLDCSMSKFKDEALSTLILNCKQLENLSFESCKLNPTVLSXXXXXXXXXXXXXALCVGLNIGSLDMITRQCQQITSLNLSWT---NQTRDAIRTICRCRELRELNLSGLRGGVNRKYMELLVKNCNKLMQLDLSDVALQIGSLKLIADNLTSLTTLSISRCSDVRSEQLFDLKELRSLSHLNLFGFLNMSALELFSETRPDVHINKHTFSPIARPISSASYEGRLW 1523
            SL DEL+L IF       +L    V KRW RL SD SLW++++   K+ +     G++L +GV + R  ++ +   +          E    F+++ +D S S  +   L  ++  C +L+NLS E  +L+  +++ +  N NL  LNL+ C G +  +L  +   C ++  LNLSW     +    +        + +LNLSG R  + +  +  LV+ C  L+ LDLSD  +           L  L  LS+SRC D+  E L +L E+ +L  L +FG +    L+L  E  P + IN   F+ IARP         +W
Sbjct:   99 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLA---------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 410
The following BLAST results are available for this feature:
BLAST of TCONS_00052396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKP27.979e-3130.12S-phase kinase-associated protein 2 OS=Homo sapien... [more]
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