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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052388 ID=TCONS_00052388|Name=TCONS_00052388|organism=Clytia hemisphaerica|type=transcript|length=392bp
ATagtaacaaaaaataatatttgtttttaatacTTTCTATTTTCAACCAT
AATAATAAAGAGTCCAACATTTTGAAGTAATGTCACCGTTAACCTCAATG
AGACAAGAGAGAAAGTCTGGAACTTGGAAAGAGACATGTATAGGTTTATG
GTCTAGAAGTGTGGCAGGTGATAATACAAAGCAACAACAATCTCCAATTT
GTATGGGCATCAATTTAGTCAGAGTTCAGaattTGGAATTGGAAACAGTC
CAACCAACCAATACAGTTGGGCTTCAAATCATCATACAAGATACTACTGA
AGCACTTTAGATACAAGCGactgtagtgcagtggtagagcatctagctac
ggtgcgcaaggttgtgggttcagcccccagccgggtcataca Run BLAST on NCBI transcript from alignment at scaffold_213:1082347..1084411- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052388 ID=TCONS_00052388|Name=TCONS_00052388|organism=Clytia hemisphaerica|type=transcript|length=2065bp|location=Sequence derived from alignment at scaffold_213:1082347..1084411- (Clytia hemisphaerica)
ATAGTAACAAAAAATAATATTTGTTTTTAATACTTTCTATTTTCAACCAT
AATAATAAAGAGTCCAACATTTTGAAGTAATGTCACCGTTAACCTCAATG
AGACAAGAGAGAAAGTCTGGAACTTGGAAAGAGACATGTATAGGTTTATG
GTCTAGAAGTGTGGCAGGTGATAATACAAAGCAACAACAATCTCCAATTT
GTATGGGCATCAATTTAGTCAGAGTTCAGGTACGATTTTATGAAAAATAT
TTATTTTTGACTTTTTGGCTGGTCAGGGGATGCTATGTAACCTAGCGACC
CTGCAACTAATTTGTACAGTATACAGTGGTCTCACTTTGTTTGTAGACTT
ATTGGAGATTCCATAAAAAATAATGAAATATAATAATATTACAAATCTAG
TTAACATTAGATCTATCATTCTAGAAACATTAAGGGCTTGTTTATTTCTC
TTATTTTAAATGCTGTAGATGCTATCTTTAAAAAAGTGCTACAATACTCC
AAAAAAACTTTGAAAACGAAAGTCATTTGTTACAGTATCCAATAATTTTC
ATGAATTCCAAAAAAAGCAATTGTTTCTTTTCTAAAGAAAAAGTTGAAAA
AAGTATCATAGATTATGGGGATTTTTCTTCAAGTTGAAGAGGATGATTTT
CATAGTTTCGCCAAATTTGGGGATAAATTTCTTTAATTTTTAGCTAAAAT
TTGTGTGTGAAAATCAATTCTTGCAAAAATTTGTTACAGTATCAACTTTC
AAGTAAATAAAAGGTTGCAATCTTCATTATTTAACATTTAACATTTTGTT
GTTTAGAATTTGGAATTGGAAACAGTCCAACCAACCAATACAGTTGGGCT
TCAAATCATCATACAAGATACTACTGGTTTGTATAATTAAATTTTAAAAA
GATTTACCAAGATTTATTAATTTTGTGAGCCAAATGTTTGATTTCAAAGA
TTTTTCATGGATTTAATTTGATGAGTCAGCAATCTTGGGCGATATCAGAG
TTTAAATTTTTGCAAACATGAGAAAAATTTACAATTAAGCACAAAATTAA
ATCTCCCGAAAATGAATCCAATCAAAGTAGTTAGCTACTTTAGCTCTAGT
TTAGACGGCCGACTTTCTGCCCTGCCTATTCTAATTGTTAGAGTAGGCAG
AAAGAGGGCACAAAGTTGGTTGTTAAAATCTTTGCTTGGAAAGGTTTGAA
AGAAGACATTGCATTGACGTCAAAAGAGGGCTATGCATCGACTTTAGACA
GCCCGCTTTATGCCCTCTTTAATTTGCAATTAGAATAGACAGGGCTAAAA
GTGGGCCGACTAAACCAGAGCTAATGGTCATTTGGGAGAACGTAACGGTC
TTTTGAATAACTTATTACTCCATCAGAATTTTTACAACACCTGTTACCTA
GGGATTTATCCCATTTGTACTGGCTGGAGGAAAGTAATATATGCTGGAGT
AATTTGTTATCTTAAATAGGTCGTTGCGTTCTCCTAAACGACTATCATGT
ACAAACATTGCTTATTGCTAATCATTTCATTGTTTTCTTAACATTATTCC
TTTGTAAAAAGTTAAAATTTTAGGCGTCACAAACGGAGGCTGGGGGCTTT
GTTTTTTTTCTGGATGTCTCTTCTAAAACNGTAATTAAAAGAAGAATCAA
GTGGAAGTGGAGCAATCCAGGGAGAAAAAGTGGCGCCCTCCCATGGCTTG
GCAGCAGGTTTTAGGTGCCCCCTAAGAATTCAGGTGACCCCTAAGATTTA
GGTAACCCCTGGTTGCCAAATATTTTTGGTGACCCCTANATCTTTTGTCT
AAAAATTACATCATTAGGTTAATTAAAGAAACATCATGTAATAATATGGT
TAGTTTATCATTACTAAGTTACTAAAAGGATTATTGATCTAATTTGAAAA
CTTTTTCAGATCTAATTAGCATTGCCATACCAAAAGTTTGGTGTTGAAGA
AAACCCATTTTTCTTATTAAAGAAGCACTTTAGATACAAGCGACTGTAGT
GCAGTGGTAGAGCATCTAGCTACGGTGCGCAAGGTTGTGGGTTCAGCCCC
CAGCCGGGTCATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052388-exon-scaffold_213-1575043694:1084183..1084411 | TCONS_00052388-exon-scaffold_213-1575043694:1084183..1084411 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1575043694:1083536..1083605 | TCONS_00052388-exon-scaffold_213-1575043694:1083536..1083605 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1575043694:1082347..1082439 | TCONS_00052388-exon-scaffold_213-1575043694:1082347..1082439 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1510915933:1084183..1084411 | TCONS_00052388-exon-scaffold_213-1510915933:1084183..1084411 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1510915933:1083536..1083605 | TCONS_00052388-exon-scaffold_213-1510915933:1083536..1083605 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1510915933:1082347..1082439 | TCONS_00052388-exon-scaffold_213-1510915933:1082347..1082439 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1491911889:1084183..1084411 | TCONS_00052388-exon-scaffold_213-1491911889:1084183..1084411 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1491911889:1083536..1083605 | TCONS_00052388-exon-scaffold_213-1491911889:1083536..1083605 | Clytia hemisphaerica | exon |
| TCONS_00052388-exon-scaffold_213-1491911889:1082347..1082439 | TCONS_00052388-exon-scaffold_213-1491911889:1082347..1082439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1082347..1084411 - |
Blast
The following BLAST results are available for this feature:
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