TCONS_00052384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052384
Unique NameTCONS_00052384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052384 ID=TCONS_00052384|Name=TCONS_00052384|organism=Clytia hemisphaerica|type=transcript|length=1355bp
caaaaataaaacacacAGGTTTGTCCAAGCTAACACCTAGATTCTGGATA
AAGAGAAAAGACAATCTCAATGAAATAAAGGAAAATTCAATTAAACTTTT
AAGGATGCATGGACTTAACACTCTTTAGAGTTCAACAAACTAATTTTGAT
GGacttttttatctcttttattGTAAAAGAATGATGGACTTAGCCCTCtt
tggaaatttaaaacattactTTTATCAGAGCTTCAGTATGAAGTTTTGAG
CCTTTTTAAGCACAAAAGTACTTGTTTTAAGTACATCAAAAGAGTGCTAA
TGAAATGAGCCAGAGATTAAGAGAAaccaaaaatcttaattttcatATAT
ACATTTAGGCCCCTTTTGTTATGGGGGAGGGGGGTTCTggacttttgaat
taaggcaGCAAATTACATACATCAgatttttattagattttgaaaaacat
gcAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGATT
GGGTTTGTTCTAAAGAAGAttgtgaaaatgtcaattttgcaAGACGTGAC
AAATGTAACAAGTGTGGAAGAGCTAAAGGTTCGTCATACATTGTAAAGAA
TGCTGGGAATGAAATTGGATCAAAATTCGCTGAGAAGAGCAAAGGTCTTT
TCAGTGCAGATGATTGGCAATGTAGCAAATGTAGTAATATTAATTGGGCT
AGAAGAACAACGTGTAATGTTTGCAATGCACCCAAAGTTGGTCCTGATGA
AAACAGAACAGGATTTGGTGGGGgattcaaggaaaatgaaggggTTATTT
ACAATGAGCGCCAAGATGATTCAGATGGAGAATATGATGAGTTTGGACGT
AAGAAGAAAAAGTATAGAGGGAAGCTGCCTTCTAAGGAGGAGGAGCGAGA
AGAAAAGAAAGCCGTAGTAAAAGAGCAACAACACAAttatgaagatgaag
aagaagaagatgatgaCGACGATGAAGATGGTGatctttcaaaatataat
ttaaGTTCCAGTGACGAGGATGACAAACCTCCTCCAGCACCAAGGATAAT
AGGGCGatCTCGTCCTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGG
ATAGATCACGGTCACCAATCTCAAGGCGCTAAGAGACAACTATACTAGGG
TTGTTCTTTTGGAGGCTTGGTACTAATCCATCAATCCAAGATGGCAAATC
CTTGgcaaatttaacttttttatattCTAACTAAATGCTCAATGTAAATT
TCTAATCATCATTCATGATTTTTCACGGCATACTCTATCAAAAATACAGT
TTATCAGTCTCGTGTTTATATTTAAGTTCCATTCCCAGTTTCTATTCAAT
TATCA
Run BLAST on NCBI

protein sequence of TCONS_00052384-protein

>TCONS_00052384-protein ID=TCONS_00052384-protein|Name=TCONS_00052384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MQKPSSGSGRFRASEGDWVCSKEDCENVNFARRDKCNKCGRAKGSSYIVK
NAGNEIGSKFAEKSKGLFSADDWQCSKCSNINWARRTTCNVCNAPKVGPD
ENRTGFGGGFKENEGVIYNERQDDSDGEYDEFGRKKKKYRGKLPSKEEER
EEKKAVVKEQQHNYEDEEEEDDDDDEDGDLSKYNLSSSDEDDKPPPAPRI
IGRSRPSADGSSSSDKRDRSRSPISRR
Run BLAST on NCBI

transcript from alignment at scaffold_213:1021046..1030357-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052384 ID=TCONS_00052384|Name=TCONS_00052384|organism=Clytia hemisphaerica|type=transcript|length=9312bp|location=Sequence derived from alignment at scaffold_213:1021046..1030357- (Clytia hemisphaerica)
CAAAAATAAAACACACAGGTTTGTCCAAGCTAACACCTAGATTCTGGATA
AAGAGAAAAGACAATCTCAATGAAATAAAGGAAAATTCAATTAAACTTTT
AAGGATGCATGGACTTAACACTCTTTAGAGTTCAACAAACTAATTTTGAT
GGACTTTTTTATCTCTTTTATTGTAAAAGAATGATGGACTTAGCCCTCTT
TGGAAATTTAAAACATTACTTTTATCAGAGCTTCAGTATGAAGTTTTGAG
CCTTTTTAAGCACAAAAGTACTTGTTTTAAGTACATCAAAAGAGTGCTAA
TGAAATGAGCCAGAGATTAAGAGAAACCAAAAATCTTAATTTTCATATAT
ACATTTAGGCCCCTTTTGTTATGGGGGAGGGGGGTTCTGGACTTTTGAAT
TAAGGCAGCAAATTACATACATCAGATTTTTATTAGATTTTGAAAAACAT
GCAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGATT
GGGTTTGTTCTAAAGAAGAGTAAGTTTTATGGTTTATAATATTTATCTTC
TTAAATTGACTTCAAATTTCTATGACAATATACTTGCACTAATATTTATG
ACTTTGATTAGATGCTGAGCTTTGGTTGATTATTAAGGATTTAATACTTA
TCATGAAATTAAGAATAAGCTATTACACCATAGAAATTTTCTTTAAACTC
AAGGATTTACAATGTTTAATTTTAATTTTAGAGGTACAAGCACACTCCAG
CTATGAAAAAATGTCACTCTTTTTTATTTGTTAGGGTAGAAAACAGAGTT
GCACATGATTAGGTTCAGAGCTACCAACACATACAATACCGCAATCTAAC
AGTCTTTAGGACTTATAACACAGCTTAACTTTGCTAAAAAGCAACTACTG
TATTACTTTGATAAAAGCCTGAGCTACTTGTTTCAAATAAACGTCCTTCC
TAGTGAGGAAGGTATTTATTCAAAGAGGGGATTTATTTTAGGCGGACATT
CATTTAAAATAAGGAATTAAAAAAAAAGGAGTGTTTCTTCAAAGTAATGC
AGTATTGCCCTTTATTAGTTAATTGAGATTTAGGAAATTATTTTAACTAT
TGTAATTTTCTTTTTAGTTGTGAAAATGTCAATTTTGCAAGACGTGACAA
ATGTAACAAGTGTGGAAGAGGCAAGACTCTTTCCTATTGATAATCTTTTA
AAGAGATTGTCAAGGCAAAGCTATCATGAAAAGCATATGAAAACTTCAAG
TCAAAGTTGTAAACAATGATTTTATCTCAAAATATTGATCTTTTCAAATG
CTTTTCATGATAACTATGCCTAGATTAAGTTTCATTTATTCATCTAGAAT
CCCTTTAAATAAGTTGTCATGATGCTTAGCCATAAAGAGTCCTGAAAGCT
GTTTTTTACTTGAAAAATCCTCAATGAAACAAGTTTCTATTTAAAGAAAT
TTAAATCCCACATTGGATTCTCTTGTTTAGAAGAGTATCTTAACATAAAC
GTCTTTGACTTTGTTTTTATCAACAGCTAAAGGTTCGTCATACATTGTAA
AGAATGCTGGGAATGAAATTGGATCAAAATTCGCTGAGAAGAGCAAAGGT
CTTTTCAGTGCAGATGATTGGCAATGTAGCAAGTAAAAATGAATGATCTT
CTTTTGCACAATGATTAGTTTTTACACAGCTTTTTGTTTTCAATAGTGGA
AAAAAGAAGACTTTTACTCTTTTACAGCGCATTACCTTCATGAACTTGAT
GAAATTTCCCCAAATGAACCAGAGGAAGTATGATTTTTACCAAACTTTGG
ACTTTGTAGCCCTTCAATTTATATTTTGCTTTGCCTTAAATAATACAGCC
TGTTACAACACCCCGATTTATATTTGGACTACTTTAATGTTTATCATTCC
ATTTCACTAGATGTAGTAATATTAATTGGGCTAGAAGAACAACGTGTAAT
GTTTGCAATGCACCCAAAGTTGGTCCTGATGAAAACAGAACAGGTTTCTA
AATATGAATTCAAATTTACAATTATATATAACCAAAACCATCATTACCCT
GATATCATCTTAAATATGTTTCAATAATTTTTAAAAATATTATAAAACAT
TTCTTCAACCTTTAAACGTTCAAAACTCAACTATCCTGCAAAAACTTGAT
TGAAAGATAAAACTGAATACCAAATTATAGCATAACTCTAATTGACTACC
ATTTTTAATCACAATGAAGAAAATGCCTTACACTTGTAGAATACAAGGGA
TTTATCTAAGGACTGTTTTATGTCCGTATATTGGCCAAAATACTCAATCC
AAGATTTAGATTTTGAAACTCAATCTAAATAAAGGAATGTTTTCTAGCAA
AATTAAACTTTTTGGCTGTTCACAAGCAAAAATAACTAATATTATCTATA
TATTCAAAAAATTTAGTTAGCTACACCCTCTGAACCCCCACCAGGGCTTT
GCCACAGACCCCCAGCTTCATCAATCCACAGCTTTGCTGAGCTGATGCCC
TTTCATGCATATTAGAAACTCGATATTTACGAAACAGCTCAAAGTGCTTA
GAAAAATCCCTTGAATACCCAATATTTCCATGTTTAAAGAAGTACCAAAG
CAATGAAAACTATAGTTCTATATATTTCATCAAAAAAAATTGATTCATAG
ATGTTATTTTTAGGATTTGGTGGGGGATTCAAGGAAAATGAAGGGGTTAT
TTACAATGAGCGCCAAGATGATTCAGATGGAGAATATGATGAGGTATGTC
CGCCAACCATTCCTTAACTTTCAAAGGTTTAATCTCTTGTTTCTTATTGT
CCCCCTTGTTTTTCAAGAAAAAAAAAATAACTGGCTAACACAGCATTGGG
GATTATAATGAGGTACATTTTGCAACCTTCCCCTAACCTTTTAATTACAT
TTACTGATTCTTTTCATATCCTTGTTTTTCAAGAAAATTAATTCTGAATT
GGCATGTACAAAACGCCTACTACCTACTACTTAATACTTACTACCTATTA
CTTACTACCTACTGTAAAATAGCTGAAAACAGCTCGAAATTACCTTTTAA
ATATTCAGCATGTTAGAATTAGCAAAATCGGAAACTTTGGTGGTAAAAAA
GTTAAAACTTCTTTTATCGTACTTTGAAGACTTCAAAATATTTTCTCTCT
TTTATTTTGTTTATGACTTTTTCCCACGCTTTTTCTATAAAGTTTACAGA
CGCACTTCTTCGGGAGAAAAATATTTCCTTCGCACAATAACTTATTTATT
CATTTCAATTTTACGGCAGTTTTATTTATAAGAATCGATCAATCTGAAAA
ATTTAAATACTTTAAGTAAGTAGAGCCCTATGTTTCACTGGGTACTTGCT
GAAAATCCTTTGATATGTCTTGACATTTATTGACAAAATGACCCTTTTGA
ACCAAACTATTTACAGGGTTGTTAAATAGGACTTTTGAAGTCTTCATTTT
ATGTAGCAAAAATTCTTATTGTGCTCAATAAGATGCTTTCAGTACCGCAA
GGTAGAAATTTTCAGTAGGAAAATACTACAAATAGCTGTTTTAGAGGTGT
CAATTTGACCATGTCAAAGTATTGACGAAATGAAATTTTTGATAAAAATA
TTGACAGTTATTGAATATAAAGCTTTGCAAACCAATCCCAAGAAATATTT
TGGCACCATTCGATATGATGTAGATCATACAACAGGATAGAGATTGACCC
CCTATTTATATTACAGAGCCTCTTTTAGACATTCATACGTGTATTCTTAT
CAGTCTTATAATAAGAGTCATAAGAAGGAGTAGGTTTAGGAAAAAGGAAT
GTTCTTATAATAAGAGTCATAATATTTACTCACTACGTAAATATGATAAA
TATTCTTTTAGATAACACTTTTTTCAAGTCAATATATAAAGCAAAGACTT
GTGTGTTAGCATTCAGATATTACAAAACCAATTTTTTTAGAATAGAGATT
TCGAAAAGGCGAAGGAGAGTTCTGGTCTGTAAAGTATACAAACAGATTAG
GTAGTAAGTATTAAGTAGTAGGTAGTAGGCGTTTTGTACTTGCCGAATTC
TGAATAACTCTAGAACCGCATTGCAAGTTATTCCCATTCAGATCGATTTC
CTGATCATGAATATGTCTCAACTTTCAACGAATCTGACCCAACTTTTTGA
ACTTTATAGGTTTGACTTACCTTAAATGTTTGAAATATGAATTTCCTTGA
TCTGCTAAAAGATTGTGTTATAACTTTTTACTCTTGCCTTTTAATATTAT
TTTTGTACTCATGTTTGAAAGATTATTTTAATCAGTTTGGTTTTATCCAT
AGTTTGGACGTAAGAAGAAAAAGTATAGAGGGAAGCTGCCTTCTAAGGTA
CGTAATGTTTACCATATTTACCAACATTTTCATCAAGCATATGATATCAA
ATGAGTGATCACTGATATTTTTTAGATTTTTGGCTGAACAGGGTGAGATT
CTGGTCAGACAATGTCTGATGTATTAGGGGGGGGGGGGTTACTTAAGCAA
ATGGAAGGTACAGGTATGTGCTGCCCTTAAGGGTACCTTTTTTGGACTTT
CAAAGTCCTACTAAAGGGTTTGAAAAATCCGTAAATCAAATTTCAGTCCT
AGCCTAGAAATCTAAGCCAGATTGATTCAGTCACTTAGTAAAATCTGATG
GTAAGTTGTGACTGAATATCTGGCTTAGTACAAGTAAACTTGGTTTCTTA
TCAACTGACAAAAACGAAATTTCAAATTTTCCCGGACACGTTTTTGTAAA
TGCACATAAATTTGTATAATTTGTTCAACACATATTTTTTAACAAAAGAT
TTCCCATAACTCATTCGCATAAAAAAAGCAAAAATATAAAAATAAGGAAT
TTGTTAAATGAATACACCCTCCTCCCTATTTACTCAACTTCTCTTTCATT
CAGTTGTATAAAGGTTTTTCAAATTAAAAGAGAGAGAGAGAGAAAAACAT
ATCTTTCTTTTTATGCAAAAAGTACAGAATAAAACATGTTCAAAAAGTCT
TTCGTTGAGAAGTGAAAAGCGTTTTCAAAACAAACGAAAAATTTCGTTTC
TTATCACATGGTCTATTATGGCCAATTAGAAGAGGCCAAATGCTCGTCAA
GTCTCACCGACTTCTGCGTTCAAAATATGAATACGCGCTTCGCCCAAGCC
AGTTTTTCAAGGCTAACTTAAAATTCCGTACATCATAAAAATCATTAAAG
CACCGATAACGCTATATTGTCTTCAGCCGTATCTTGACCTTGTAAAAACT
GGCTTGGTTGACCAGGCTATTTCAGTCCCACAAAGGGTCGGTAAATAGGA
AAACCTCAACTTTTCACACCCAGAATGACCAAAATTTGGTAAAATTTGTC
TCAATGAAAAGGTTGGAAAATTCCTCCTTTTTAGTTTCCCGTTAAGGGTC
CGGGGTTGAACGTTAGGTGGCACACCCCTGTTAGCTCGCAACCCTAGTAC
CCTCCAGATGTATCTGACCATAGTTCGGTGCCCTATGAATATATGAGTGA
GTAAACCATGCCTTAATTTCTTCTGAGGCAGTGACTTTTTTTTCATAATG
TGGATATTGAAAACATATTTTAGAGTGTTGTGTTGCTATTAAATACCCTT
CTGCAACTCTACTGAATGACTGGGAAAAGTTTGAAATTGATTTTTTCATC
AGGAGGAGGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAGCAACAACAC
AATTATGAAGATGAAGAAGAAGAAGATGATGACGACGATGAAGATGGTGA
TCTTTCAAAATATAATTTAAGTTCCAGTGACGAGGATGAGTAAGCCGTTT
TTTAAATACAGTTTCTTGAACTCTGGTGGAAATGATACCAACTGATATGA
TCTGATCACACACCATTACATTGGTGCTTATTATGACACACAAGTTTGGG
GAACGAGTAACTAAAATGATCCATGCTGATACTTTTCTCTTTGTTTTTAG
CAAACCTCCTCCAGCACCAAGGATAATAGGGCGGTAAGTGGTATTATCTT
GTTTTTATTCTTAAAGTTTTATTTTGCTAGATAGTTTGTCAATTTCATTT
ACCACCATAACGTTCAAAGAAAATTTCTAGCAAATTCTCAACTCATTTTA
AGTCTACTCTCAGGTGCCTAATAAACGTTTTCAAAAGATTTCCAACCCCC
ACGGACCTTATTAGGGATCTTCTCAAAAATAAATTCGCTTAAATAATTGA
ATTTAAGCGAAAAATTCGCTTAAATAATCGAAGTACTTCGATTATTTAAC
AATCGAAATTCGATTATTTAGTCACCTCAGTTCGATTATTTAGTCCCCTC
GGTTCGACTATTTAATCCTATTATGCGATTAATTAATCCTTTTGATTCCA
AAATATAATCGAATTTTTTCCAAAACATAGTCGAATATTGGTTATTTTTT
CTTACGTAGATCCAAAACAGCGCAAACAATCCTTTGTCTACTGTAGATTT
GAAAGACAGAAGAAAAAATATTTTCAAAAAGCCGTAGTCAAATCAACCAA
TGACTCCATAATTCTTCTTACCTTTAAGGATTTTTGATCTACTAAGGGGC
ATCATGAATTATGAAATGATAGAATAATCCTTTTGTGAATCACATTATCG
CATCATCTTAAAGTTTCTTAATGTTTGTATAACAATTCCACGATCTCTCC
ACGATAAAGTACTTCTATCTTTTTCTATATTTTCAATTTCCACACACTTT
CCTCTGTTATCAACCTCTCAACACAGTTGATTCTTATGTCTTTGTTATTG
TTTTTCGATTCGAAAATAGCACTCCATCGTTCATGTTCAAATCAAAAAAG
GGCAAAACAAAAAAAAAGATAAAAGGATAAAAGGAAGAGCGCTCACAAGA
TCAAGAATACGTCATTACGTCATATAAAAGCAGGAAGAAAACATTCTTTT
GCTCTATTGTTCTGTTCGCAAACGTCAATCATGGCGTTTTGATTGGTCAA
TGCAACATTTTTTTCTTACAAGTTACGTTCTGCTNTCGCAAACGTCAACC
ATGGCGTTTTGATTGGTCAATGCAACATTTTTTTCTTACAAGTTACGTTC
ATTCTTACTATTGTTCTGTTTGCAAAAATGGATTCGAATTTTACATCCAG
GTTTTTTTTAATGGCTAGATAAGAGATCGAATGTTTTGTTTGGAAAAGTT
TGAATTGTTAAATATTCTAAAAGATTAACTCTTCCTTGGATTTCTTATAC
ACAAAGAGATCCTTCACGATTTACGCTGTCATTATCATAGAACTTTGCAC
TCAAGTCAAACATTGTTTTTACCAAAAAAAAATTGGATAATCAAAATAAA
AAACTACCTAAGAAGCCATCAAATGTTGTAAAATAAAATATAGTGATTGC
TTCCCCAGTAGAAGAGAGGGAAAGCTTCCAAAAGGGCATCCTACAGGCTT
TGCTTTCTTATAAGCTCCCGATTTGTCACACGCTCCTGATCTGTGACGTT
TCGAATGTGATGCAACATTTAGAATGCTATGATATTTTTCAAAGGAAGGG
AGAAAGAAAAAATGAAAATCACGTGAAAGAAAGAGAACGCACTCAGAAGG
AGTGTATTTCATCACTATTTTTGGTAAAAGTTCACGTGATAACACGAAGG
AAAGCACGCAGAGGGAGCTCAATGTAAACAAACATTTCGTAAAAGTCTGC
ATTCTGCCAGATTCTGCTTCATTCATTGTGGGTCATGGTGGGCTTGGCTG
AACCTCAAGATATTTGGTCTTTCTAGACTTTTTTCTTGTTTTCCAATTTT
GTATTATGATTTGAAAAGAAATGTAAGAGAGTAAAGTATTTCGCTATTCA
AAAATACTTGATAAACAAATTCAGAATCTGTAAGTAGTAAAAGAACAATT
TTCAAGATGACCCTGTCTCACCACAAACAATCCTTTCGTTAATATTCCTG
TCTCAGTGGAATTCTCTATTATTATCTTCTAGACAATGTAAAATTCTTTA
TAGCCTAATTTCGGTAAAACTTTAACCGAATTCCACAAGCGAATTCAATA
ATTACTTTTACTGAATTAGTTAAACTTTTTGCTGAACCGATTCGGTTAAA
CAACCGAATTTAACCGAAAACCATTTTACCAAAATTTGGTTCTTGTTATA
TTTTTGAGAGGATCCCTAAATTATAAGCGAAAAATGATTAATTAATCGAA
TACAAGGATTAAATAATCGAATATAGGAGATTAAATAATCGAATATAGCA
GATTAAATAGTCGAAACCATTCGTCTAAACAACAGCAGCTATTCGATTAA
ATAGTCAAATCATAAATCGAACTTCATAATCGAAAATCGATTATATTTTT
GAGAAGATCTCTTAGGACCCCTACATTTATTAAAATTCAGAAATTTCTTA
TCAAGTGTTTTCATTGGACACCTAATTTCAAAGTCGTGTCTTATCTTTGA
AATGGAGATTAAGTATTTTCTGCAGGCTTTCAATGACGTTGACCTAGAGA
GCTGACAAATTAACAAGTTAAGCAATTTTAATAAATATAATTATACTTAT
AGGTGTGACAAAATATGACTTATTGTTGTGTTACACTCAAAATATGTACA
TCTTCTTGCTTCCAATAATTAGGGGGTGTTTTCGAAAAATTATCCAATTT
CCAACCCCCACGCTTATACAATACTTTTGCTATGATTTGTACTGGAATCC
TGAAAACTTAGCTGGTCGAATTGAAATTTTTAAATCAACCTTTGTGCTTC
TTTGGTTTGATAGGCAGGAATTCCTTTTTATTTTTGTTTCAGATCTCGTC
CTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGGATAGATCACGGTCA
CCAATCTCAAGGCGCTAAGAGACAACTATACTAGGGTTGTTCTTTTGGAG
GCTTGGTACTAGTAGGTCTTTGGTTTTTTAAAACATAGTCACTGCACAGC
TCTTTTTGCTCAATAAATCTAAGCACTTCCCTTCACTTTGTCCATCTATT
TGAAAATAATCTTACTATTTTAGTTTTAAACAAAAGTCCCTTTCATACAT
TTTTTGAAATTTTTTGTATTTATTACGGTAAAGGTATTATTCAAGGTACG
TCATTTCAAACAAAATCATCTTTTCTCCCAGCCAAAAATCTTGCTTTCAT
TTCTGAAAATTTTTACTTCCCTTCTCTTATAGATCCATCAATCCAAGATG
GCAAATCCTTGGCAAATTTAACTTTTTTATATTCTAACTAAATGCTCAAT
GTAAATTTCTAATCATCATTCATGATTTTTCACGGCATACTCTATCAAAA
ATACAGTTTATCAGTCTCGTGTTTATATTTAAGTTCCATTCCCAGTTTCT
ATTCAATTATCA

Coding sequence (CDS) from alignment at scaffold_213:1021046..1030357-

>TCONS_00052384 ID=TCONS_00052384|Name=TCONS_00052384|organism=Clytia hemisphaerica|type=CDS|length=6156bp|location=Sequence derived from alignment at scaffold_213:1021046..1030357- (Clytia hemisphaerica)
ATCTCGTCCTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGGATAGAT
CACGGTCACCAATCTCAAGGCGCTAACAAACCTCCTCCAGCACCAAGGAT
AATAGGGCGGAGGAGGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAGCA
ACAACACAATTATGAAGATGAAGAAGAAGAAGATGATGACGACGATGAAG
ATGGTGATCTTTCAAAATATAATTTAAGTTCCAGTGACGAGGATGATTTG
GACGTAAGAAGAAAAAGTATAGAGGGAAGCTGCCTTCTAAGGATTTGGTG
GGGGATTCAAGGAAAATGAAGGGGTTATTTACAATGAGCGCCAAGATGAT
TCAGATGGAGAATATGATGAGATGTAGTAATATTAATTGGGCTAGAAGAA
CAACGTGTAATGTTTGCAATGCACCCAAAGTTGGTCCTGATGAAAACAGA
ACAGCTAAAGGTTCGTCATACATTGTAAAGAATGCTGGGAATGAAATTGG
ATCAAAATTCGCTGAGAAGAGCAAAGGTCTTTTCAGTGCAGATGATTGGC
AATGTAGCAATTGTGAAAATGTCAATTTTGCAAGACGTGACAAATGTAAC
AAGTGTGGAAGAGATGCAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTG
CATCAGAGGGTGATTGGGTTTGTTCTAAAGAAGAATCTCGTCCTTCAGCT
GATGGTAGCTCATCAAGTGACAAACGGGATAGATCACGGTCACCAATCTC
AAGGCGCTAACAAACCTCCTCCAGCACCAAGGATAATAGGGCGGAGGAGG
AGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAGCAACAACACAATTATGAA
GATGAAGAAGAAGAAGATGATGACGACGATGAAGATGGTGATCTTTCAAA
ATATAATTTAAGTTCCAGTGACGAGGATGATTTGGACGTAAGAAGAAAAA
GTATAGAGGGAAGCTGCCTTCTAAGGATTTGGTGGGGGATTCAAGGAAAA
TGAAGGGGTTATTTACAATGAGCGCCAAGATGATTCAGATGGAGAATATG
ATGAGATGTAGTAATATTAATTGGGCTAGAAGAACAACGTGTAATGTTTG
CAATGCACCCAAAGTTGGTCCTGATGAAAACAGAACAGCTAAAGGTTCGT
CATACATTGTAAAGAATGCTGGGAATGAAATTGGATCAAAATTCGCTGAG
AAGAGCAAAGGTCTTTTCAGTGCAGATGATTGGCAATGTAGCAATTGTGA
AAATGTCAATTTTGCAAGACGTGACAAATGTAACAAGTGTGGAAGAGATG
CAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGATTG
GGTTTGTTCTAAAGAAGAATCTCGTCCTTCAGCTGATGGTAGCTCATCAA
GTGACAAACGGGATAGATCACGGTCACCAATCTCAAGGCGCTAACAAACC
TCCTCCAGCACCAAGGATAATAGGGCGGAGGAGGAGCGAGAAGAAAAGAA
AGCCGTAGTAAAAGAGCAACAACACAATTATGAAGATGAAGAAGAAGAAG
ATGATGACGACGATGAAGATGGTGATCTTTCAAAATATAATTTAAGTTCC
AGTGACGAGGATGATTTGGACGTAAGAAGAAAAAGTATAGAGGGAAGCTG
CCTTCTAAGGATTTGGTGGGGGATTCAAGGAAAATGAAGGGGTTATTTAC
AATGAGCGCCAAGATGATTCAGATGGAGAATATGATGAGATGTAGTAATA
TTAATTGGGCTAGAAGAACAACGTGTAATGTTTGCAATGCACCCAAAGTT
GGTCCTGATGAAAACAGAACAGCTAAAGGTTCGTCATACATTGTAAAGAA
TGCTGGGAATGAAATTGGATCAAAATTCGCTGAGAAGAGCAAAGGTCTTT
TCAGTGCAGATGATTGGCAATGTAGCAATTGTGAAAATGTCAATTTTGCA
AGACGTGACAAATGTAACAAGTGTGGAAGAGATGCAAAAGCCATCAAGTG
GAAGTGGAAGGTTTCGTGCATCAGAGGGTGATTGGGTTTGTTCTAAAGAA
GAATCTCGTCCTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGGATAG
ATCACGGTCACCAATCTCAAGGCGCTAACAAACCTCCTCCAGCACCAAGG
ATAATAGGGCGGAGGAGGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAG
CAACAACACAATTATGAAGATGAAGAAGAAGAAGATGATGACGACGATGA
AGATGGTGATCTTTCAAAATATAATTTAAGTTCCAGTGACGAGGATGATT
TGGACGTAAGAAGAAAAAGTATAGAGGGAAGCTGCCTTCTAAGGATTTGG
TGGGGGATTCAAGGAAAATGAAGGGGTTATTTACAATGAGCGCCAAGATG
ATTCAGATGGAGAATATGATGAGATGTAGTAATATTAATTGGGCTAGAAG
AACAACGTGTAATGTTTGCAATGCACCCAAAGTTGGTCCTGATGAAAACA
GAACAGCTAAAGGTTCGTCATACATTGTAAAGAATGCTGGGAATGAAATT
GGATCAAAATTCGCTGAGAAGAGCAAAGGTCTTTTCAGTGCAGATGATTG
GCAATGTAGCAATTGTGAAAATGTCAATTTTGCAAGACGTGACAAATGTA
ACAAGTGTGGAAGAGATGCAAAAGCCATCAAGTGGAAGTGGAAGGTTTCG
TGCATCAGAGGGTGATTGGGTTTGTTCTAAAGAAGAATCTCGTCCTTCAG
CTGATGGTAGCTCATCAAGTGACAAACGGGATAGATCACGGTCACCAATC
TCAAGGCGCTAACAAACCTCCTCCAGCACCAAGGATAATAGGGCGGAGGA
GGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAGCAACAACACAATTATG
AAGATGAAGAAGAAGAAGATGATGACGACGATGAAGATGGTGATCTTTCA
AAATATAATTTAAGTTCCAGTGACGAGGATGATTTGGACGTAAGAAGAAA
AAGTATAGAGGGAAGCTGCCTTCTAAGGATTTGGTGGGGGATTCAAGGAA
AATGAAGGGGTTATTTACAATGAGCGCCAAGATGATTCAGATGGAGAATA
TGATGAGATGTAGTAATATTAATTGGGCTAGAAGAACAACGTGTAATGTT
TGCAATGCACCCAAAGTTGGTCCTGATGAAAACAGAACAGCTAAAGGTTC
GTCATACATTGTAAAGAATGCTGGGAATGAAATTGGATCAAAATTCGCTG
AGAAGAGCAAAGGTCTTTTCAGTGCAGATGATTGGCAATGTAGCAATTGT
GAAAATGTCAATTTTGCAAGACGTGACAAATGTAACAAGTGTGGAAGAGA
TGCAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGAT
TGGGTTTGTTCTAAAGAAGAATCTCGTCCTTCAGCTGATGGTAGCTCATC
AAGTGACAAACGGGATAGATCACGGTCACCAATCTCAAGGCGCTAACAAA
CCTCCTCCAGCACCAAGGATAATAGGGCGGAGGAGGAGCGAGAAGAAAAG
AAAGCCGTAGTAAAAGAGCAACAACACAATTATGAAGATGAAGAAGAAGA
AGATGATGACGACGATGAAGATGGTGATCTTTCAAAATATAATTTAAGTT
CCAGTGACGAGGATGATTTGGACGTAAGAAGAAAAAGTATAGAGGGAAGC
TGCCTTCTAAGGATTTGGTGGGGGATTCAAGGAAAATGAAGGGGTTATTT
ACAATGAGCGCCAAGATGATTCAGATGGAGAATATGATGAGATGTAGTAA
TATTAATTGGGCTAGAAGAACAACGTGTAATGTTTGCAATGCACCCAAAG
TTGGTCCTGATGAAAACAGAACAGCTAAAGGTTCGTCATACATTGTAAAG
AATGCTGGGAATGAAATTGGATCAAAATTCGCTGAGAAGAGCAAAGGTCT
TTTCAGTGCAGATGATTGGCAATGTAGCAATTGTGAAAATGTCAATTTTG
CAAGACGTGACAAATGTAACAAGTGTGGAAGAGATGCAAAAGCCATCAAG
TGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGATTGGGTTTGTTCTAAAG
AAGAATCTCGTCCTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGGAT
AGATCACGGTCACCAATCTCAAGGCGCTAACAAACCTCCTCCAGCACCAA
GGATAATAGGGCGGAGGAGGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAG
AGCAACAACACAATTATGAAGATGAAGAAGAAGAAGATGATGACGACGAT
GAAGATGGTGATCTTTCAAAATATAATTTAAGTTCCAGTGACGAGGATGA
TTTGGACGTAAGAAGAAAAAGTATAGAGGGAAGCTGCCTTCTAAGGATTT
GGTGGGGGATTCAAGGAAAATGAAGGGGTTATTTACAATGAGCGCCAAGA
TGATTCAGATGGAGAATATGATGAGATGTAGTAATATTAATTGGGCTAGA
AGAACAACGTGTAATGTTTGCAATGCACCCAAAGTTGGTCCTGATGAAAA
CAGAACAGCTAAAGGTTCGTCATACATTGTAAAGAATGCTGGGAATGAAA
TTGGATCAAAATTCGCTGAGAAGAGCAAAGGTCTTTTCAGTGCAGATGAT
TGGCAATGTAGCAATTGTGAAAATGTCAATTTTGCAAGACGTGACAAATG
TAACAAGTGTGGAAGAGATGCAAAAGCCATCAAGTGGAAGTGGAAGGTTT
CGTGCATCAGAGGGTGATTGGGTTTGTTCTAAAGAAGAATCTCGTCCTTC
AGCTGATGGTAGCTCATCAAGTGACAAACGGGATAGATCACGGTCACCAA
TCTCAAGGCGCTAACAAACCTCCTCCAGCACCAAGGATAATAGGGCGGAG
GAGGAGCGAGAAGAAAAGAAAGCCGTAGTAAAAGAGCAACAACACAATTA
TGAAGATGAAGAAGAAGAAGATGATGACGACGATGAAGATGGTGATCTTT
CAAAATATAATTTAAGTTCCAGTGACGAGGATGATTTGGACGTAAGAAGA
AAAAGTATAGAGGGAAGCTGCCTTCTAAGGATTTGGTGGGGGATTCAAGG
AAAATGAAGGGGTTATTTACAATGAGCGCCAAGATGATTCAGATGGAGAA
TATGATGAGATGTAGTAATATTAATTGGGCTAGAAGAACAACGTGTAATG
TTTGCAATGCACCCAAAGTTGGTCCTGATGAAAACAGAACAGCTAAAGGT
TCGTCATACATTGTAAAGAATGCTGGGAATGAAATTGGATCAAAATTCGC
TGAGAAGAGCAAAGGTCTTTTCAGTGCAGATGATTGGCAATGTAGCAATT
GTGAAAATGTCAATTTTGCAAGACGTGACAAATGTAACAAGTGTGGAAGA
GATGCAAAAGCCATCAAGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTG
ATTGGGTTTGTTCTAAAGAAGAATCTCGTCCTTCAGCTGATGGTAGCTCA
TCAAGTGACAAACGGGATAGATCACGGTCACCAATCTCAAGGCGCTAACA
AACCTCCTCCAGCACCAAGGATAATAGGGCGGAGGAGGAGCGAGAAGAAA
AGAAAGCCGTAGTAAAAGAGCAACAACACAATTATGAAGATGAAGAAGAA
GAAGATGATGACGACGATGAAGATGGTGATCTTTCAAAATATAATTTAAG
TTCCAGTGACGAGGATGATTTGGACGTAAGAAGAAAAAGTATAGAGGGAA
GCTGCCTTCTAAGGATTTGGTGGGGGATTCAAGGAAAATGAAGGGGTTAT
TTACAATGAGCGCCAAGATGATTCAGATGGAGAATATGATGAGATGTAGT
AATATTAATTGGGCTAGAAGAACAACGTGTAATGTTTGCAATGCACCCAA
AGTTGGTCCTGATGAAAACAGAACAGCTAAAGGTTCGTCATACATTGTAA
AGAATGCTGGGAATGAAATTGGATCAAAATTCGCTGAGAAGAGCAAAGGT
CTTTTCAGTGCAGATGATTGGCAATGTAGCAATTGTGAAAATGTCAATTT
TGCAAGACGTGACAAATGTAACAAGTGTGGAAGAGATGCAAAAGCCATCA
AGTGGAAGTGGAAGGTTTCGTGCATCAGAGGGTGATTGGGTTTGTTCTAA
AGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033115XLOC_033115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052384-exon-scaffold_213-1575043694:1029839..1030357TCONS_00052384-exon-scaffold_213-1575043694:1029839..1030357Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1029188..1029240TCONS_00052384-exon-scaffold_213-1575043694:1029188..1029240Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1028726..1028831TCONS_00052384-exon-scaffold_213-1575043694:1028726..1028831Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1028365..1028447TCONS_00052384-exon-scaffold_213-1575043694:1028365..1028447Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1027615..1027694TCONS_00052384-exon-scaffold_213-1575043694:1027615..1027694Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1026011..1026055TCONS_00052384-exon-scaffold_213-1575043694:1026011..1026055Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1024569..1024705TCONS_00052384-exon-scaffold_213-1575043694:1024569..1024705Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1024375..1024407TCONS_00052384-exon-scaffold_213-1575043694:1024375..1024407Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1021497..1021615TCONS_00052384-exon-scaffold_213-1575043694:1021497..1021615Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1575043694:1021046..1021225TCONS_00052384-exon-scaffold_213-1575043694:1021046..1021225Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1029839..1030357TCONS_00052384-exon-scaffold_213-1510915933:1029839..1030357Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1029188..1029240TCONS_00052384-exon-scaffold_213-1510915933:1029188..1029240Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1028726..1028831TCONS_00052384-exon-scaffold_213-1510915933:1028726..1028831Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1028365..1028447TCONS_00052384-exon-scaffold_213-1510915933:1028365..1028447Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1027615..1027694TCONS_00052384-exon-scaffold_213-1510915933:1027615..1027694Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1026011..1026055TCONS_00052384-exon-scaffold_213-1510915933:1026011..1026055Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1024569..1024705TCONS_00052384-exon-scaffold_213-1510915933:1024569..1024705Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1024375..1024407TCONS_00052384-exon-scaffold_213-1510915933:1024375..1024407Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1021497..1021615TCONS_00052384-exon-scaffold_213-1510915933:1021497..1021615Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1510915933:1021046..1021225TCONS_00052384-exon-scaffold_213-1510915933:1021046..1021225Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1029839..1030357TCONS_00052384-exon-scaffold_213-1491911889:1029839..1030357Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1029188..1029240TCONS_00052384-exon-scaffold_213-1491911889:1029188..1029240Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1028726..1028831TCONS_00052384-exon-scaffold_213-1491911889:1028726..1028831Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1028365..1028447TCONS_00052384-exon-scaffold_213-1491911889:1028365..1028447Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1027615..1027694TCONS_00052384-exon-scaffold_213-1491911889:1027615..1027694Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1026011..1026055TCONS_00052384-exon-scaffold_213-1491911889:1026011..1026055Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1024569..1024705TCONS_00052384-exon-scaffold_213-1491911889:1024569..1024705Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1024375..1024407TCONS_00052384-exon-scaffold_213-1491911889:1024375..1024407Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1021497..1021615TCONS_00052384-exon-scaffold_213-1491911889:1021497..1021615Clytia hemisphaericaexon
TCONS_00052384-exon-scaffold_213-1491911889:1021046..1021225TCONS_00052384-exon-scaffold_213-1491911889:1021046..1021225Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052384-proteinTCONS_00052384-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1021046..1030357 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.4157	63.9821	22.2581	24.3478	39.2482	33.7189	25.0074	28.3898	30.2486	27.1208	29.8917	24.4312	26.4941	27.3301	32.4197	25.2098	40.3846	36.6042	21.7952	20.2035	22.6752	20.2235	26.0403	27.0828	39.7336	43.6603	23.055	27.1259	22.7968	19.8126
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR017337UCP037956_Znf_RanB2
Blast
[Close]
BLAST of TCONS_00052384 vs. Swiss-Prot (Human)
Match: ZRAB2 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.844e-43
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 2 
Query:  479 FRASEGDWVCSKEDCENVNFARRDKCNKCGRAKGS-SYIVKNAGNEIGSKFAEKSKGLFSADDWQCSKCSNINWARRTTCNVCNAPKVGPDENRTGFGGGFKENEGVIYNERQDDSDGEYDEF 844
            FR S+GDW+C  + C NVNFARR  CN+CGR K + + ++K  G EIG   AEKS+GLFSA+DWQC  CSN+NWARR+ CN+CN PK    E RTG+GGGF E E V Y ER+ +SDGEYDEF
Sbjct:    6 FRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIERE-ESDGEYDEF 127
The following BLAST results are available for this feature:
BLAST of TCONS_00052384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZRAB21.844e-4360.98Zinc finger Ran-binding domain-containing protein ... [more]
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