TCONS_00052360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052360
Unique NameTCONS_00052360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052360 ID=TCONS_00052360|Name=TCONS_00052360|organism=Clytia hemisphaerica|type=transcript|length=2341bp
TTCAGGTaaacataaaaatgtaaaaaatcatGCTAAAAACATTCTTACAG
TTATACGGTACATTGGTTGTACGCAATCTCGCTTATTCCACCTCCACCAC
GGCCATGGCTGCACACATGAGAGCGGTCCGCATCAAATCTTTTGGCGATC
CATCACAACTCTACATTGAAGATCAAGAACCGATACCACAGTTGGCTTCA
AATCATGATGTTTTGCTACATGTAGCCGCCACTGCTCTCAACAGGGCGGA
CACCCTTCAACGAAAAGGCGGATATAATCCTCCAAAGGGTGCTTCAGATA
TTCTTGGCTTGGAAGCTAGTGGTGTTATTGAGAAGATTGGATCTAATGTC
CAAGGATTCAAGGAAGGTGATCGTGTAATGGCTTTATTAGCAGGAATGGA
TTACATCAGTGCTGCTGCCATACCGGAAGTTTGGCTAACCGCATATCAAC
TCCTTCACAAAAGCAAGGTGTTGACATCATTCTTGACCCTGTTGGAGGTT
CAAACGTTGATCAGAACCTTGCCAGCATTGCTATGGATGGTCGTTGGGTT
TTGTATGGACTGATGGGTGGTCCTAAAGCATCGAATGACAAATTTCTTGC
TCTGATGCTCCGCAAACGTGTCCAGTTACTTAGTTCTACTTTAAGAGCGA
GGTCGCTCGATTACAAAAAAGATTTGGTGGACTCATTTGAAAATCATGCA
TTGGAAAAATTCGTTTCTGGTGAATATAAGCCCATCATCGACAGTATCAC
GACACTCGATGGAGTTGCCGATGCCCATAGAAGAATGGATGCCAACCTCA
ATAGCGGTAAAATCATCATGAAAGTGTCAGATAGTCTCCTAGCAAAGGAT
GAGCTTTAGTCAATACATTTGTTGCAATTTATTTAGGGTTTTTTTAACAA
CAGTTTTATAATCAGTTATAATTATTCTTTATTGATAATTTTACTAGAGA
ATTCgtgaaattcttttattttacaatcctaggtatttatttaaaaaata
tttttgactatttttgaagTACGACTACTACCATAGTTAAACTGCCTTTG
TCCTCTAGTAACCAGCTGTTATCGCCAGTTAAAAATAGCCGAAACTCAGG
TCCGTAATTTCCATTCGTTgttcacatgactaaaggttaaatctcaaaat
tagtacctcacaaaatttaaagttttactgtggtggtcatctttgagatt
gagattgccctttttcatgtagaggaatagtcaatcgttttcatatgaca
aaaaggccaatctcaaaagcagaaaaaaattgcaagatttccaattttcc
aagacactgattttgagattgaacctttagtcatgtggaCGACGGTATCA
TTTCCATAAAACCCATTCTGGTTATCCGAAAGTCTTGGCAGCCTCGTTTC
GTCTTCTGAAGTTTTCATCATTCTTGAAAGTCCACGCAAGTCCTTTGTCC
GTGATGAAAATATCCCATGGTTTTCTTATCTATATTTTAATTTCTCTCCT
GGTTCTTTGCTCTCCATTATAATACGTTCAAGATGACTTGTACCTGATCC
AAAAGTGCAATCTTTGATTTTAATAAGAAGCAAACCAACTATACCGAACA
AAAAGATTGCAGGGAAAGCAACAATGAtgattttgataaatcttttgTCA
TTAGCACTGAACAGTTGCACTGGCTTTTTCTCTAGCATTCCACTGTCGAT
AAGTTCTTTGTTCTAAGGAAGCAAAAGAAaccttttttattagaattttg
gATTATATTCGGCTTGTTCTCATTTTTGAAGGCTCTGTCGAAGGATATGT
AACTTAAATTAAAGGCGATAACTTTTTTTTCGCTGAaaataaagttttca
aaatcttctttttcacaaaagtcttcattcttcttcaattttcttttcat
acGTTCTAGTTTTTCAGctcaattaaaaatgaagaaataaataagttttt
gagaaaaaaaggaagcATAAGCAAAATCAGAAATTTCGATCCCGAACTCA
CAATTTCAATATTTGGAGCATCCATGTAAGCCTCCAAGAAAGCCTTATTC
ATCATAATCAAAGTTTCATTGATGGCTGTAAACCCAATCGATTGGGAATC
AAATTTATGCTCGATACCAACTTTGACGTCATTTCCTAACCGACTGATAT
CATCTGCTTTGATTTTATACGTCATATCATCAATCGCAAAAGCTGAAATA
CATTAATCgGCTCTCATCATATCTTCAAACGAGGCGTATCCTTAAATCAA
AAGAGATGAAAGAATAGATCGTTAATCAACAAGGATGACAGATGTCTTCT
CGGAGGTATTCCACGATGCAATTTGACTGCTCTCATGGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_213:696029..704764-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052360 ID=TCONS_00052360|Name=TCONS_00052360|organism=Clytia hemisphaerica|type=transcript|length=8736bp|location=Sequence derived from alignment at scaffold_213:696029..704764- (Clytia hemisphaerica)
TTCAGGTAAACATAAAAATGTAAAAAATCATGCTAAAAACATTCTTACAG
TTATACGGTACATTGGTTGTACGCAATCTCGCTTATTCCACCTCCACCAC
GGCCATGGCTGCACACATGAGAGCGGTCCGCATCAAATCTTTTGGCGATC
CATCACAACTCTACATTGAAGATCAAGAACCGATACCACAGTTGGCTTCA
AATCATGATGTTTTGCTACATGTAGCCGCCACTGCTCTCAACAGGGCGGA
CACCCTTCAACGAAAAGGCGGATATAATCCTCCAAAGGGTGCTTCAGATA
TTCTTGGCTTGGAAGCTAGTGGTGTTATTGAGAAGATTGGATCTAATGTC
CAAGGATTCAAGTGAGAATAAATAAACATTGCCCTCGTTCATAAACACGT
AGTTTTAAGATATGTACAGCGAAGTCTCCGTAATTCGAGCCTCTATAACT
CGAATGAGACTCTTTAACTCGAAAATGTTTTTTGTCCCTTTTGGTAACAA
TGCCTTATAAACCAATATCCATAACTCGAAATTTCTTTAAATGCTTTCTA
CGGGAATAAAGGGAGCTTGTTTTAGGCAGTGTCTTCATGCTGAGTCAGAT
AAAGTAAAGCTACTTTTTTACGCAACAATATCCTGCAAACAAGTGAAAGA
TCGAAAGTTGTTTCGAGATGTGACCTCACATTCTATTATTTTTGTAAACA
AAAAAATAGCAAAGTTGATTTCGAGCAAATTTACAATCGAATATTTTGAT
CATAAGATGGAAAACGTTCTACTTGTTATAAACATAAAAAACATTCGAAA
GAGTATCAGTAAAGGTCCCTTTATTTGAGGAATGTTTTTTTGCTCAATGT
ATTTTCATTTTTTTAAACCTTTTTCTAATCTTGTCGCACTTGTTTTTACT
ACATCAGCATCATCAGACCTTTCATTCTTAAAACAAAACCTTAAAACTCT
TGGACAATTCTCAGAAGAAATAGTTTTTCCTTATCATCTTCTGATTTCTC
TTTTGTAGGGAAGGTGATCGTGTAATGGCTTTATTAGCAGGTATTTTCGC
CCATAAAATAGCCCTTTTTATACTTTTAAAAATGTCGTTTCCAAATTTTT
TGTGCTGTGATCTTTGTGACATATCTGTAAAGGTTTATGCATTTGCTTAT
GTCTCTCAGTTTGTCTGTATTCGTTTATTTTCTTCTACTAGAACATAGAA
GTCCATTTTATTCAATCTTTTACGTCTACTGGTAGCAAATGCATAAACCT
TTAAAATATTTATTTACTAACCTTTTTTCACGATCTGGTGGTGGCTATGC
CGAATATGTATCCGTACCCTATCAACAACTCATCCATATTCCCAAAGGAA
TGGATTACATCAGTGCTGCTGCCATACCGGAAGTTTGGCTAACCGCATAT
CAACTCCTTCACAAAGTCAGTGCTATTCAACCCAATGAGCGGGTTTTGGT
GCACGCAGCAGGAAGTGGAGTGGGAACGGCTGCTATACAGCTTATTAAAG
GATTACCAGGAACTCAAGTCATTGCTACAGCAGGTAGCGATAAACTTCGC
ATTTCGTTTCTGTCAACAGCTAATTTCTTTAGATTAAGGATTATTATTTT
TAAGTAGGAAAATATTGATTTACCTTATTGGAACTAATTTTCATGGGAAT
TTATTTCAGCGTTTTCTGAACCCGCGAAATATATTTTTTTTCCAAATTTA
TCGAGAAATTTGAAAAATCTCTAAAAAAATTTATGAAATTTGTCCAAAAA
AGTACAAAACCGCGAAAATTAAAACCCGTGAAATGCAATATTTCCGATTT
TTTTTTTTCGACCGCGAATAAGTTTCCGCGAAAATTAGTTCCAATAAGGT
AATTACTTTCAATAACTTATCGCAATTACGTGACCGGGTAGCTACCGACT
GTAGAGCATTTACCTAGTAATCCAAGGCTTGTGAATTCGATCCCCGGCTA
ACGCCAACTCAGCGAATGAGTACGAAGCTTAAGATTATGTAAGTAACTGG
GAGCTTATAGTAGGTGTGTCACATCTCAGTATTCATTCGATCATTCAGGT
ATAGCGCGAATAGAAAAGTGCTATTTTCTCTCACTCCTGGCTCCTAAGAC
AGCCATCAGATGAATATACTTACCTCGATGAAGATGTACAAATTTACTTC
CAGCCTGCTTCTCCGTCTCAAAATTCAGCAAAATAATGAACATTTCAAAA
AGCCTTGCTTCGACCACTGTTACTTTACCCAGCTGTCACATAACGTTGTT
TTAACGTTCAAATAACGTTATATGGACGTTGTAAACGTTAGATAAACGTT
AAAAGAACGTTGTGTGCCAGCTGGGTTTACCCATATTTGATTTTGCCATT
CTCTCACACTGCTTCTTAAAGTGTTCGTCATAAATAGAATTGTAAAACGT
TCTTCACAATGCATTTCAGGTAGTGCAGCAAAACTGGAGAAAGCGAAATC
GTTGGGAGCAGATGTCTTAGTGAATTACAAAGAAGAGAAATTCTCTGAAA
GAGTCATGGATGCAACAAACAGTAACTTATTATGATCCTTTTTTCTCTGA
TTTTACGTACATTTCAAATGTTGGAAATATCCTTGCAAGAATTTTAGGTT
CCAATTCTAATTTATATTTTTTCTAAACGACTAAAAATGAAATATCTTAC
TCCAACTTGTTTTCTCCTGTTGTTAATCTAGGGAGATAGAATTTAGCAGT
CAAATCTCTTCCAAACATCGAAAATGGTGTCAATGTGACTTTTGTGGTGA
GGTAAACTTGTCAAAATTAGAATTATATTTGATATTTATATCTTTTCTTG
TAGAGCAAGGTGTTGACATCATTCTTGACCCTGTTGGAGGTTCAAACGTT
GATCAGAACCTTGCCAGCATTGCTATGGATGGTCGTTGGGTTTTGTATGG
ACTGATGGGTGGTCCTAAAGCATCGAATGACAAATTTCTTGCTCTGATGC
TCCGCAAACGTGTCCAGTTACTTAGTTCTACTTTAAGAGCGAGGTCGCTC
GATGTGAGTATATCTTCAGTGATCAAAGTTCTTCCTCACAGAATTTTTTT
CAAAGTTTTCCGTCTCAGTTAGAAATGGTTATTTAGCAAGAAAAAGTAAT
TTTATTCACTAGAATAATTCCATCAGAAAGAAATCTCGTATTAAAACTGT
GTTTATGGCTGATTTTACATTTAGAGTTGCTTTAATTAACAAATTTTAGT
GCCTTTCTAGCCAATCTAGGGGGTAAAAAGTCAGAAAATTTTCTGTCCTT
CGGCCTCAACCATGGTGGGGCCTGTGGGTGTCACTGTATACCGAAATATC
TCTATCAACAAATTTTCCGTCTCACAGAAAAAAACTGCTTTGACCACTGT
ATCTTTTATCATAAAGGTCGGTATACAATTTTGTGCGAAAATGAGCAAAA
AGTGAGCTGTTGTTTTTTTTAAAATCAAATAATACATCACCTTAAGCTTA
ACTTTTGAACTGTTTGACTATGATGCTTTGTGAATTCCTCGCAATTCATT
TACTTACTATTCTAAAATAGTAGCTTTTCATAATCACATTCACTAAACAT
GGTATTTTCCATTCTAAATAGCATCTGGCTATTCCATTTAATACTCATAG
GTATTTGGGGAGTGGACGAACCTTCTTTCAAAAATTCTTGAAATCCTGGA
AATTGGGGGGGATTGTCGGATTACCCCCCACCNATAATCCTTCATCCGAA
CTTCACCTTTTAAGTACAAAAAAGATTTGGTGGACTCATTTGAAAATCAT
GCATTGGAAAAATTCGTTTCTGGTGAATATAAGCCCATCATCGACAGTAT
CACGACACTCGATGGAGTTGCCGATGCCCATAGAAGAATGGATGCCAACC
TCAATAGCGGTAAAATCATCATGAAAGTGTCAGATAGTCTCCTAGCAAAG
GATGAGCTTTAGTCAATACATTTGTTGCAATTTATTTAGGGTTTTTTTAA
CAACAGTTTTATAATCAGTTATAATTATTCTTTATTGATAATTTTACTAG
AGAATTCGTGAAATTCTTTTATTTTACAATCCTAGGTATTTATTTAAAAA
ATATTTTTGACTATTTTTGAAGTACGACTACTACCATAGTTAAACTGCCT
TTGTCCTCTAGTAACCAGCTGTTATCGCCAGTTAAAAATAGCCGAAACTC
AGGTCCGTAATTTCCATTCGTTGTTCACATGACTAAAGGTTAAATCTCAA
AATTAGTACCTCACAAAATTTAAAGTTTTACTGTGGTGGTCATCTTTGAG
ATTGAGATTGCCCTTTTTCATGTAGAGGAATAGTCAATCGTTTTCATATG
ACAAAAAGGCCAATCTCAAAAGCAGAAAAAAATTGCAAGATTTCCAATTT
TCCAAGACACTGATTTTGAGATTGAACCTTTAGTCATGTGGACGACGGTA
TCATTTCCATAAAACCCATTCTGGTTATCCGAAAGTCTTGGCAGCCTCGT
TTCGTCTTCTGAAGTTTTCATCATTCTTGAAAGTCCACGCAAGTCCTTTG
TCCGTGATGAAAATATCCCATGGTTTTCTTATCTATATTTTAATTTCTCT
CCTGGTTCTTTGCTCTCCATTATAATACGTTCAAGATGACTTGTACCTGA
TCCAAAAGTGCAATCTTTGATTTTAATAAGAAGCAAACCAACTATACCGA
ACAAAAAGATTGCAGGGAAAGCAACAATGATGATTTTGATAAATCTTTTG
TCATTAGCACTGAACAGTTGCACTGGCTTTTTCTCTAGCATTCCACTGTC
GATAAGTTCTTTGTTCTAAGGAAGCAAAAGAAACCTTTTTTATTAGAATT
TTGGATTATATTCGGCTTGTTCTCATTTTTGAAGGCTCTGTCGAAGGATA
TGTAACTTAAATTAAAGGCGATAACTTTTTTTTCGCTGAAAATAAAGTTT
TCAAAATCTTCTTTTTCACAAAAGTCTTCATTCTTCTTCAATTTTCTTTT
CATACGTTCTAGTTTTTCAGCTCAATTAAAAATGAAGAAATAAATAAGTT
TTTGAGAAAAAAAGGAAGCATAAGCAAAATCAGAAATTTCGATCCCGAAC
TCACAATTTCAATATTTGGAGCATCCATGTAAGCCTCCAAGAAAGCCTTA
TTCATCATAATCAAAGTTTCATTGATGGCTGTAAACCCAATCGATTGGGA
ATCAAATTTATGCTCGATACCAACTTTGACGTCATTTCCTAACCGACTGA
TATCATCTGCTTTGATTTTATACGTCATATCATCAATCGCAAAAGCTGAA
ATACATTAATCGTAAGTTATACCTTAAGGAAACTAATTTTAGCGGGAACT
AGTTTTCGCGATCGAAAAAAAATTCCAAAAAATCGCATTTCTCCGGAATT
AATTTTCGAGGTTTTGCCTTATTTTGGACACATTTCTTTCCTTTTCCTAG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCAGAAAAAACTGAATAATTTTTTGT
AGGATTTGATTGGGTCAATGAGACAAAAAAAACAAACAGCGCTGATCTCT
TCCAGTTCCAAAAATGTATAACATCATGCAGGTTTGAGGACGCGCTCACC
TGTCTAAATCCAATTTTCTGTTGGTAGGTCGTCTGCCATTCAAAATTTTA
CAAAATTGCTCATATTTTCATAAAAAATAAAGNAAGTTTCATTGATGGCT
GTAAACCCAATCGATTGGGAATCAAATTTATGCTCGATACCAACTTTGAC
GTCATTTCCTAACCGACTGATATCATCTGCTTTGATTTTATACGTCATAT
CATCAATCGCAAAAGCTGAAATACATTAATCGTAAGTTATACCTTAAGGA
AACTAATTTTAGCGGGAACTAGTTTTCGCGATCGAAAAAAAATTCCAAAA
AATCGCATTTCTCCGGAATTAATTTTCGAGGTTTTGCCTTATTTTGGACA
CATTTCTTTCCTTTTCCTAGGGATCTTTCAATTTTTTAAATGAAAAATAG
CCAAATTTTATGATTCGAGGATCTAATTTTCGCGCTTTTGTCAAAAACCG
CGAAAATTAGTTCCCGCTAAAATTAGTTCTCTCAAAATAGACTATAAGGA
CACACTTACTTATCCCTGCAATGAAGATGTAAAGTCCAATTTTAAGATAA
GTATCATTTTGAAAATAGATGTTGATCAATCAATCAACCTATCTTCAACG
AGTGCTGAATGTTGAAAACTTAAAGATCGCTGTGGAACTTATCTGAGGAA
ATACGGTTCTGTAATTGGAGCTCTTTCTAATTACCTCACTTTGAAGGTAG
TATACTCTCTTTGTTTCATAAAAACCAATAGATTTTTTATCAGACTCTAC
TGTTCTTATTTTTTTGCACTTTGAGCCTCAAATTCTTCTTATTATGTTCT
TATTACAAGGTGAAATAGAGGTATTTTAGGTTTTATACCTAATTTTTACT
ACTTCGACCTCTTAATTGCTAAAAATTGAGGAATTTTAGGCTCAGCATTG
TTCATAAAATTGTTACCTTACTTTGAGCCTCATTGTTCTTATAAAACAGA
GTATTTAAGTATTTTCTTTGGTTAGGGCTTTTTGAGTAGAATAATTATTT
ACCTTCAATATTTCCTTTTTTCAGGGCTCTCATCATATCTTCAAACGAGG
CGTATCCTTAAATCAAAAGAGATGAAAGAATAGATCGTTAATCAACAAGG
ATGACAGATGTCTTCTCGGAGGTACTTTACTATGCATACACATTTTGTTA
TAAGAACATCCAAAATTTTGAAGCTTTTAGATGTTCTTAACTTTTTGAGT
TTTAAGCTTAACATGTCCCAAGCCTGTTTTTATTTTCACTATTTTGTGAG
TATATTTGTCATTTTCCTAAGAAAATAGGTGTTTTAGTGTCTACAAAGCC
TTAAAATGTTCTTAACTTGTTCTTAACATTTTGGCCCTCGAAGCCTTTAT
ATGTTCTTATATAGTTTGTTCTTATAAAAAAAACGTGTATTATTTGATAA
CCAAAATTAAAAACTTGCATTGGCATGATCAATATTCAGAATTTTATCTC
TTCTGGTAGATAGAGGAAAAAATCCTATTTTCTTGTGGAATAGAGAAATC
TTTTCTACCCTTGATGATTCGAATTCATCAATGGGCTCTTCCAGAAAATG
TCAGTACATGGGGGTAGAGGATATATTGTCCGGGGAGTAGCGAAAAATCA
TCAAAATTTGCCCTGTCCGGGGGGGGGGGGGGGAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCATATTCAAATTATTTCTGGAAAAGCCCAAT
TACCAGTTCATCAATGAATCTTGAAAACTATTCTTTTTCGATACTGTTTA
ACTTGGTTGTATTAGTAAAAGAATCTATCTATCTTTAGACGATTAAAGAG
TCCTTTCCCTTCTCTTCTGCTACCATATGGAATTAGTACACGTTTTTTTA
TAAGAATAGTGTAATTCCATTTCATCATGGATATTCTTAATTTTTTTGGG
AAAATCGTCCTAAAATATTCTTACAGCATTCTTAGGTTAGGATCCTAATT
CAGACTAGATTTAACATTTAGTACATACGTCTCAAGCATAAAATGGCATT
TTTGTGAAAGGATAAGCCTTACTTGGGGGTAATTGTAATTAATGCTCTAA
AAATGACATTCTTAACCCGAGTAGAAAAATTTCATGATGGTGATATTCTT
AGCATTATTCTTAATTTTTAGGCCATTTTCATCATGGACATTCTAATAAA
GAGTATTCTTATAAAACAAATAGCGTTTTCCACATAGTAGCAAAGAAGAG
TGCACACTTAAAACAAATGTACTTTAGAAATCTTATTTACTTACGAATAG
GTATTCCACGATGCAATTTGACTGCTCTCATGGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033103XLOC_033103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052360-exon-scaffold_213-1575043694:704404..704764TCONS_00052360-exon-scaffold_213-1575043694:704404..704764Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:703725..703756TCONS_00052360-exon-scaffold_213-1575043694:703725..703756Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:703350..703417TCONS_00052360-exon-scaffold_213-1575043694:703350..703417Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:701762..701961TCONS_00052360-exon-scaffold_213-1575043694:701762..701961Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:699504..701050TCONS_00052360-exon-scaffold_213-1575043694:699504..701050Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:697394..697490TCONS_00052360-exon-scaffold_213-1575043694:697394..697490Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1575043694:696029..696064TCONS_00052360-exon-scaffold_213-1575043694:696029..696064Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:704404..704764TCONS_00052360-exon-scaffold_213-1510915933:704404..704764Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:703725..703756TCONS_00052360-exon-scaffold_213-1510915933:703725..703756Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:703350..703417TCONS_00052360-exon-scaffold_213-1510915933:703350..703417Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:701762..701961TCONS_00052360-exon-scaffold_213-1510915933:701762..701961Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:699504..701050TCONS_00052360-exon-scaffold_213-1510915933:699504..701050Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:697394..697490TCONS_00052360-exon-scaffold_213-1510915933:697394..697490Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1510915933:696029..696064TCONS_00052360-exon-scaffold_213-1510915933:696029..696064Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:704404..704764TCONS_00052360-exon-scaffold_213-1491911889:704404..704764Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:703725..703756TCONS_00052360-exon-scaffold_213-1491911889:703725..703756Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:703350..703417TCONS_00052360-exon-scaffold_213-1491911889:703350..703417Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:701762..701961TCONS_00052360-exon-scaffold_213-1491911889:701762..701961Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:699504..701050TCONS_00052360-exon-scaffold_213-1491911889:699504..701050Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:697394..697490TCONS_00052360-exon-scaffold_213-1491911889:697394..697490Clytia hemisphaericaexon
TCONS_00052360-exon-scaffold_213-1491911889:696029..696064TCONS_00052360-exon-scaffold_213-1491911889:696029..696064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:696029..704764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06246	6.63193	6.74904	5.48781	2.02364	1.67916	1.51692	1.56242	0.953319	1.7438	0.871272	0.852706	0.776298	0.635914	1.27396	2.42935	2.39594	2.99207	1.9632	1.52399	0.815784	0.657239	3.03065	2.64851	0	0.144903	1.94148	1.08189	1.31974	2.43787
Blast
[Close]
BLAST of TCONS_00052360 vs. Swiss-Prot (Human)
Match: QORX (Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-24
Identity = 64/136 (47.06%), Postives = 81/136 (59.56%), Query Frame = 3 
Query:  117 MRAVRIKSFGDPSQLYIED-QEPIPQLASNHDVLLHVAATALNRADTLQRKGGYNPPKGASDILGLEASGVIEKIGSNVQG-FKEGDRVMALLAG---MDYIS-----------------AAAIPEVWLTAYQLLH 458
            M AV     G P  LY+++  +P P      +VLL VAA+ALNRAD +QR+G Y+PP GAS+ILGLEASG + ++G   QG +K GD  MALL G     Y++                 AAAIPE WLTA+QLLH
Sbjct:    1 MLAVHFDKPGGPENLYVKEVAKPSP---GEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLH 133

HSP 2 Score: 96.6709 bits (239), Expect = 2.181e-21
Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:  455 SQKQGVDIILDPVGGSNVDQNLASIAMDGRWVLYGLMGGPKASNDKFLALMLRKRVQLLSSTLRARSLDYKKDLVDSFENHALEKF-VSGEYK--PIIDSITTLDGVADAHRRMDANLNSGKIIMKVSD 832
            ++  GV++ILD +GGS  ++N+  +A+DGRWVLYGLMGG    N    + +L KR  L++S LR+R   YK+ LV++F    L  F   G  +  P++D I  +  + +AH+ M+AN N GKI++++  
Sbjct:  205 TKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDI-NGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ 332
The following BLAST results are available for this feature:
BLAST of TCONS_00052360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QORX8.075e-2447.06Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP5... [more]
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