TCONS_00052304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052304
Unique NameTCONS_00052304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4025

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052304 ID=TCONS_00052304|Name=TCONS_00052304|organism=Clytia hemisphaerica|type=transcript|length=4025bp
GAAGTAGGGAATAAAATTACTGAGGAAAAAATTTAATCACAAAATACTGC
AGTGCATTAAAACTGTAAAGATCATGGTATGTTCAGTTGAAAATACGACT
CAGGATTTAAACCATCTAGATTTCGCAAGTCATCACAACGCATGCGTCAA
ATCGTACAGTGATGGTTACAACAACGATAACACACAGGCTAAATTCCTAT
CAGAGGCTGTTCTAACACAAAACATTGAAGACGATACACATATACCACCA
GACTCTTTTAAAGATGAACTTTCAAGTTTGAACAGTTTTCGAGATAGCCC
GTCAGTGCAGAGTAATTATTTGCAGATAAAACGCGAGCCTTTAAGCCGTA
CTCGATCTGACGGTATATTaagtttaaagaaaaaatggacTGATAGTTTA
CTGGAGGACCGGAAAACTTCATTGAATGATATTACACTCGAGAATATACA
TTTCTCTGACCGCATGCGTAAAAGGAGAGCTGGCCTCTCTTCAACGCTTT
CGTTATCTTCAAGTGTCAGGAGGTCTCGGTCGAGTTTACGTGGACCAATT
GAAAGACAGGATTCATTGGTATCGACCAATCAGAACATGGAATTAGAATT
ACAATCACGATGTGAATCACCGGTTCTTAatgatgatGAGACGTTATCGA
CCTGTGAAAACGCATCCGGACGTCCGTTGGGGTCGCAAAGCATTCGCGGT
AATGGTGCAAACGAGAAAAGTGCAGACCGTATTGTCATCAATGTCGGGGG
TACCCGACATGAAACCTTCCGGTCTACACTTCGGGTATACCCGGACACTC
GGTTAGGTTGGTTATCGATTGACGGGTCTGATGTCTCTGATGCTTTCGAT
CCTGTTCTGAACGAATATTTTTTCGACCGACATCCGACTGCTTTTAATCA
AATCATGAATTTCTACAGAACAGGAAAACTACACACGCCAGCTGATATTT
GTGGTCCATTATTCGAAGAAGAACTCAATTTCTGGGGTTTAGATGAAAAA
GCTATGGAGCCATGTTGTTGGCCTAAATACACAGAACATCGCGATGccca
agaaaatttgaaagtctTTGATAGCCCGTTGTTGAATAATCAGCATGATG
ATGATGAGATAGAACAGCCTGCTATCAGCGTTTCACGTATCCCGAACTAC
AAAGAACCCGAAGACCAAGGTTTCAAAAGTcgttttttgaaagtctttag
gcCATCGTACTTCAATTCCATACGATGGCTGTCGAAGAAGAAATTAATTT
GGGCTGTTATGGAAGGTCACTCAGAACGAAGACCAATGCTTTCTAAGggT
GTTGGTTTCATTTCCCTCATGTTCATCGTATTATCGGTTTTATCGTTATT
TTTTCACTCGATGCTACTCGTTATCAGTGATAAAGCCGAATCAAATCACG
AACTATTCACTTACTTATTATTAGCACTCGATTACTTAACGTTTGCTTGG
ATGTCAATCGAGTTAATAATTCGATTCGTATCGAGTCCTAATCGAATACA
GTTTCTAATAAGTTTCTATACTATCGTTGATCTATTGACGTTAATTACAT
ATGCGTTACAATTCAACCACGGTATGGACTACCACAGGACTAAAGATGGA
GTAATCGATTCAAATTCGATCACAACCGattataaaaacattgaaatgtt
CTCAATTGTacgattagttcgattggttcgattttTCCGATTATCAGTTG
GACTACAGATTTTTAAGCATACCATTATAGCGAGTTCCAGGGAactattg
ttgttggttttgttGCTATTGTTACCTGTGGCTTTGTTTGCAACTATTGT
TTATTTCTTCGAAAGAGAGaCCAACACTGGTAAATTTCGCACAATTCCTG
AATCCATATGGTGGGCTGTAATCACAATCACTACAGTCGGTTATGGAGAT
ATGTCACCTGAAACGACATGGGGCAAAATATTTGGAATTATTTGTGCTGT
GTTCAGTGTATTCATTCTTGCTCTACCTGTATCGATTATCGGTACCAACT
TTACACTTTTCTACAACTACGCACAAGCAAGAATGAAGTTACCTAAACGC
CCTAAACTCGCACTTGTTGGAGCAGCAAACGCCTTGAGGGCAGATACGAG
TCAACATTCATTAAGTCCAGAACCTGGAGAGAGTGAGGCGGAGGGCGGAG
ATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATTGATTTACCA
AAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACATTACAAGCAA
AAGGTTCCGACGCGAGCGTTTATCACTATTCGCATCCGGTCCAACCCGTC
AATCGACACGACGCAGTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAATT
CGACAACGGCAAAGAAACGGAACGTCGGCGTCACAGAAAAGTAAAGGTAG
TACGCCGTCAAGTGAGGACGAAGTGTCGGAAgctgaaagtgaaaaaatcg
aaGTTTTTAAACCAGTCAAACGTGACAATGATAATAGTGTAACGAATTCG
TTTGATAACGAAGCTTTCGAACATAACAATGAAAAACAAGTCGAAGTGGC
CACGGAAGTGACTGAAAATGGTCACActaaccaaaataaaaagataataa
aCAATACAGAAAATGACAAAGAAACTAAGGATCTGAATTCGAAATTCCAA
AAACCATTTGATGATGAAAAACGTGAACGTTTACCGCCAATTAACGGTGG
TCCGGTACCCATTATAGAAACCATTCTCACCAATACAGATAACACAGACC
AGAATCTTACGACTGGACCCATTGTGAACGGCCACGGTCCGCCGATATTA
AAAGAGCCGGTCATGAATAATCGAaactcatttaaaaaaattagctCACC
ACCAGTGTTAAGAAAAATATGCGGTAATGGACTTGAACCGGTTAGGAAAA
GTAACGGAATGGCTGTTCCGGTTGAGGAAGTTGAATCGCCGGAATTATTT
CGGAGAAAGTATAGTAATAACCATTTGTATGTACCAACGGATGGATGTTG
AGGAGATTTGATGTGGATACCAATGAGATATAACTGAAAGCTAGAGTCAA
ATGAATCTCTgatgtaggatttgaagccacttatttcctatactcttatg
tgcttaattgtaggaggtagaataagcaggggggttggtactctgggaga
aaatccataaaatgcgGGGAGGGTCAATATTAAGTGATTTTGGGGTggtt
tcccaaaaaaaaaaaccctaggaaaatgaaggttttgacACTTTTTCAGT
ATTTTCAGGAAAGTTTCATAATTGGGGGGTCATTGTAAAATGCTTTGTGG
gtgattttttcagaaaaacttgcaAAATGACCCGCCCCCTACAGTTAAGC
ACAGAAGGGTACATAAGTTGGGTCCTTGTTTTGACAAAATATGGCGAACT
GTGAGTTTTTTAAAGGGTTACACCTCGCTGTTTTCCCCCGATCAATTTGT
TATTTATACTCCCTTGGACCCTTATAATAtcatatttaattttatttgcG
TCTATGAACAATCTCTTCAGTGCTTCTGAACAATTTATATGCCAGGGAAG
GTTAGTTATTTCACTGCCACTTTCTAATGTACCATAGAGTGGTTAAACTT
TCTTATTCCCAGCTAAACTTTCCTTCAACTTGCTAATTTGTATAGGTTGT
CTACGCATTTGTACTtagcaaaatattatttttgccGGTATGACCGAGAA
AAAAAACAGCCGAAAGATCCTATAGAAATGCACCACGAATTTctgccaga
aaatgaaaaaatttagcCAATTTATATATTATTATGTTAAGATTTCATTA
TTATGTTATTATACACAAAACACGACGAATTTATTTGTAAATAACTCCAA
TTTCATCAACCTGCTATTATTACCCTATTGAAAAgaccaaaaagaaatat
tacaaaaaattatcaatttgaaTGTTTGTGTAAATTCTGtctcaatacac
ctttttgaccgtagccgccaattgccgtgcgggcatttttttgttcgttt
taccaccctaaaaccattCCAGTcg
Run BLAST on NCBI

transcript from alignment at scaffold_213:1196127..1206541+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052304 ID=TCONS_00052304|Name=TCONS_00052304|organism=Clytia hemisphaerica|type=transcript|length=10415bp|location=Sequence derived from alignment at scaffold_213:1196127..1206541+ (Clytia hemisphaerica)
GAAGTAGGGAATAAAATTACTGAGGAAAAAATTTAATCACAAAATACTGC
AGTGCATTAAAACTGTAAAGATCATGGTATGTTCAGTTGAAAATACGACT
CAGGATTTAAACCATCTAGATTTCGCAAGTCATCACAACGCATGCGTCAA
ATCGTACAGTGATGGTTACAACAACGATAACACACAGGCTAAATTCCTAT
CAGAGGCTGTTCTAACACAAAACATTGAAGACGATACACATATACCACCA
GACTCTTTTAAAGATGAACTTTCAAGTTTGAACAGTTTTCGAGATAGCCC
GTCAGTGCAGAGTAATTATTTGCAGATAAAACGCGAGCCTTTAAGCCGTA
CTCGATCTGACGGTATATTaagtttaaagaaaaaatggacTGATAGTTTA
CTGGAGGACCGGAAAACTTCATTGAATGATATTACACTCGAGAATATACA
TTTCTCTGACCGCATGCGTAAAAGGAGAGCTGGCCTCTCTTCAACGCTTT
CGTTATCTTCAAGTGTCAGGAGGTCTCGGTCGAGTTTACGTGGACCAATT
GAAAGACAGGATTCATTGGTATCGACCAATCAGAACATGGAATTAGAATT
ACAATCACGATGTGAATCACCGGTTCTTAatgatgatgtaatgttttgtt
ctttgttTCCTACCATGTTCatacgttactgttccgtttcgttccggtat
gattttcgtcccggaacgtttcggagtaagaaaacggagcagtttcgttc
cgatgaaaaaagtataacgaaaccgtttcgatctgttttgcgaattttga
cgttcacacttgtttcggaaccgtttcgttttggAACGGAACTGTAACGT
CTGAATCTATTTTAGTTTTACCACGACACAACTGTAtggggactgggttc
gagtttttAACATCATGATAAACGCGTAAACTCGATACCACTCATTGGAT
CCAAAGATACTTTTTGAATGATATAGTTCTAATTGTGTGTGGGGGCGGGA
AGGGCTTCCGAGGGTATACCAGAATACAGGTAATTCTTTCATGAAATATT
GGCGTACCGGTTCTCAAATATCGGTCAATAATTGCTTATAATTTACACGA
AAATTACTGCGCTGTCAAAAAGacagtacatgttttttttttataagcat
aacgtttataagcatacgcaggctcagtttttggtacctaaacaatggct
ctattgtttgagaacaatagaatgctaagcataatgcgagcctgatgtag
gggcagacacttgcttataaaaaaaaaacatgtataaagCTGCAATAATT
AACGACGTTTCACATGCATGTTACATTTTGGGTCAAATTCTTTATCAAAG
AAGGCTTATTCCGTTGAAATGACTGGTTGACttatcaactttcttttctt
tctctaGGAGACGTTATCGACCTGTGAAAACGCATCCGGACGTCCGTTGG
GGTCGCAAAGCATTCGCGGTAATGGTGCAAACGAGAAAAGTGCAGACCGT
ATTGTCATCAATGTCGGGGGTACCCGACATGAAACCTTCCGGTCTACACT
TCGGGTATACCCGGACACTCGGTTAGGTTGGTTATCGATTGACGGGTCTG
ATGTCTCTGATGCTTTCGATCCTGTTCTGAACGAATATTTTTTCGACCGA
CATCCGACTGCTTTTAATCAAATCATGAATTTCTACAGAACAGGTTTGTT
AAACAatgcaattttaaattttgtgttaGGCGTGACCAGTTTGATTAGCT
GTTTTACGGACCCGACCGACCTTTaaattccaaaaaaccaaattaaaaaa
aattatttagttactacatttttattttcatttctttataaactgccaaa
ttttcaaaattgtggtagtttttccaaggtttctagaattttatgttcaa
ctTTTCAATCTATCCATAAATTCAagctttttgtgtttttctttttctcg
cttttttttcaagatgcagtagtttttgctgcttttttaggaaattttat
cggtgaaattctacttttatttttactttttcaccGACCGACACTCTTTT
TTGGGTAGTTGGGCACGTAaatcaacaaattaaattggcctcgccttatA
AGAAATTAATTTCAAATGTTGGAACTTATTataattgttatttttcaaGC
TTGTGGGGAATAAGGGTCAACTTTCTCAGTGGCAAATGCCCGCTAACATT
TTGTTGAAACGAAGTACCGGATGTGTCAAAAAAACGCCCCTGAcatgttt
gattttattgagAGCTTGTTATGTTATGCCAGggtaaaaaagttcttttt
ccACTTATTTTGACCATGGGTTTGTTCTCTACGCCCTCTACCACCCCTCT
TAGCGTCAATATATACCTCGAttgtattttttctaaaaagtatATACTCT
AACGGGAAAAAGGTTGATTGGACGAATTTTATCTAGCACATAACCTTTGA
TTTCAGGAAAACTACACACGCCAGCTGATATTTGTGGTCCATTATTCGAA
GAAGAACTCAATTTCTGGGGTTTAGATGAAAAAGCTATGGAGCCATGTTG
TTGGCCTAAATACACAGAACATCGCGATGcccaagaaaatttgaaagtct
TTGATAGCCCGTTGTTGAATAATCAGCATGATGATGATGAGATAGAACAG
CCTGCTATCAGGTAATCTTTATCCTAACACtgaaatcttaaaatctcttt
ctATAGCAATACGTTCTtctctttttgagaaaaatattaatTAATATGCG
AATGTTGTTTGGAGTAATTATTTCATTCAAacgaaaaatcatgaaaatat
tttctcctGATAATGCCTTCCATGAAATTAAGTCCCCGATTAGGTCAACC
GCGAAacttaatcccattaaagtaaaacATAACgcggtgttttttacact
tttggcaaaaacgtgacattaaattttctaaaaacggttttttttaataa
aattaattttaacgagcattttgggatgaaatcttccaaaaaggtgTAAC
ACACGAGCTTAgaatttttggttttggtcCCAGGAGCGAAGAAGGATcca
atattcaaaatattagattttaagaattttggaatTATGAGAGTTAAGTG
GCTCTTGGATTGATTCTGATGGTCTGaacaaggatttattatacactgga
tatacaagtaacagatttttgccgatttctcgtgtactagctatgtccgc
agtaatgatagtattgttcactctccttccctcattaaatgatttttcga
agcatttttattgcatttcttatcgaaaatcactcatccaattccctaaa
gagacttaaaactttcctgtgagagtcagattcttccacttaattgctaa
ttttAAGTCGTTATGAcatttcaagctgtgagaaagatgcaaaaggcgtg
ttatgtataagaaatttaatgttgacaccggaaattttcaaacttcaacc
tcaaaaaaaccacttTGCCACCACgcgcctccaaaggattttcataccac
agtggagccaaaacactcaagtcttatgtatgttaatttcagctcttctg
gggacagtcttggaaagatatttccaattgaaaatctcgtgtcactataa
gcattttggctggatttcttgtctaatgatgtttttctcacattacatTT
CACAAANCTGAACTTGTTACATGATCTCTATATTTTATGAAACAATGATG
AAGAGCACTTTTGGATCCGAAATTCCATCCGAAAAACATCTCTGAACTTG
AACAATTAGAACaacatttcatcgttaaaatggACTGATTTgggattaaa
aatttcattttaaaccTACCCCAACCCCAACTCGCAAAATGGAATTATTA
ATCCTTCGGGGCTCTATCTGAGCTTATTTTAGCTCATTAACGTAACGACT
TCATCATGCATAACGTAAAAAATCAGTTTAGAGCCTTGTAGGATATTTCA
TTCGACGCTGATTTCGGATAAGGCAAAGTATGTTACTTTCAATGAAGGAT
TTGATCATCCTTAGATGCTCTATTCTAgtggaaaatcttattttcgtTTC
GTGTTCTTAAGAGCCTAAACGTTCCAAATGTATTTAATTTAAAACTTGTT
TAAAAAAACcttcacgtttttgccaaaagtgtaaaaacacCGACATAACT
CGAATCTTTTTCTAGTTCGAAAAAGAGTGTTGTACCTATGAATAGACggg
tttcaatgttttgattttgtacggGCGGACGGGTGTGAGCGGGCGATCGC
GCTTGATTATTGGAGGCAAAAAGACTTACGATTTATATGGAGGCAAGTga
atatcaatcaaatttttgataacTACCAAAAatacctacctacctaccta
cctacctacctacctaccgACCGAAATTTATGAATGATAAGCATATATAT
CTCTGAaaaaacatactaaaatttattttcaaaagtcctACCAGATACTt
cgtcaaaacaaaaaatctgctTGCCTTCAGCTAATGTTATGGTCATTTTG
CCTCCAAAAAATCGGGCGGTAAGTCACGTGAGTAAACAAATGACGTATCA
CGAAAGCCGTCTATAGGCAACTGTAATTTCATATGTTTACTTTCTTCTTA
GCGTTTCACGTATCCCGAACTACAAAGAACCCGAAGACCAAGGTTTCAAA
AGTcgttttttgaaagtctttaggcCATCGTACTTCAATTCCATACGATG
GCTGTCGAAGAAGAAATTAATTTGGGCTGTTATGGAAGGTCACTCAGAAC
GAAGACCAATGCTTTCTAAGGTACAATTACGATTAACTTCAAACTAGAGT
CTAGTCCcttagtttcattttttatggctCTGATAGCGCGCACTAATGTA
TCACGTTCACCAGTGAAATGAAATAAGTGGTGTAAGTGACTCTGGGTACG
CGATTGGATTGGCTTTTCTTTCCCTTTAGTCGACTTTTCACTGACTGCTC
AACAGAGAATCAATTACTATACGATTAGGTTGATTTTCCTGAAAGCGAAA
ATATAccaaaaatatctcaaaccatctgattattccTATTTTGGAGAAAT
AAATCCGTGACGCACTTCGAACAAATTACTTACACTTTatacatttttct
tttccagggTGTTGGTTTCATTTCCCTCATGTTCATCGTATTATCGGTTT
TATCGTTATTTTTTCACTCGATGCTACTCGTTATCAGTGATAAAGCCGAA
TCAAATCACGAACTATTCACTTACTTATTATTAGCACTCGATTACTTAAC
GTTTGCTTGGATGTCAATCGAGTTAATAATTCGATTCGTATCGAGTCCTA
ATCGAATACAGTTTCTAATAAGTTTCTATACTATCGTTGATCTATTGACG
TTAATTACATATGCGTTACAATTCAACCACGGTATGGACTACCACAGGAC
TAAAGATGGAGTAATCGATTCAAATTCGATCACAACCGattataaaaaca
ttgaaatgttCTCAATTGTacgattagttcgattggttcgattttTCCGA
TTATCAGTTGGACTACAGATTTTTAAGCATACCATTATAGCGAGTTCCAG
GGAactattgttgttggttttgttGCTATTGTTACCTGTGGCTTTGTTTG
CAACTATTGTTTATTTCTTCGAAAGAGAGGTAAGTAGTCACATTCACAGA
TATCACATTTCTTTGAACACTACAATTTGTGACTAAATATTGTGGCAAGA
ATTCCCTTCCCCCTTAGTACCAATGTTGAAAGGCTGTCACCATGCTTAGA
AAAACCTCACATCAACACTGATATTAGGGGgagagatttttcaagaaatt
gccacatattttgtcactgattgtagatagGCTTACTGCTCACAGATTTC
CCGTAGAAGTGTGGTGTCCAGTTTAGAATTCAACTACTCCAGGATGTTGT
TTTCTGATTCAACTGTGATTTTTGAACCCTCGAATTTTCTATATATCGAG
CCTCCTAGTACAAATGGATACTTTTCAATTAGCTGATTATTAacctactc
ttaggtgccaaataaacgcggGGGAGGGGGGCTTGTTAATTTTTCGAACA
TTTTCTAACCCCCCGGACCTTATTAGGACCCCCCCCCGTTTATTAATTTT
TAAAAATATTTTCAGCTATCAAAGAGAAGGCCCCTTATTTGGTCTAAATA
ACCTGATTTTAGCCTATATTTACCTTATTTTTTGGTTTTCAGAAATTTCC
AATCCCCTCCCCGGCAATTAGGTCCACCCCGCTTATTAAAATCTCAAAAA
ATTTCCCCCCCCCCCCCGTTTATTCGACCCCCCCCcttgtttatttggca
cctaagagtatgtcCCTACAATAAGAACAGCACCATTTTCAGGGCGACAC
TAGCCTAGATGCCCCCCTAGATCACAGACCTTTAAATAACTGCAGGTATA
AGGGACAAGAATCTGTTAATTGATGGCAGCAGCCTAAGACTATGTTCGTA
CGTAACGGTTCTTTTTCGGTCCGAAGTGAAATGAATCCATTATATTGGTT
ACAAGTGACcgtaaaacttgaatttaaccaatagaatggcttcatttcgt
ttcggagcgtgtgaacatggtctaagaaGACGACGTGGAACCGTGCAGTC
TGAATAtgttttaatatcttttttttagaCCAACACTGGTAAATTTCGCA
CAATTCCTGAATCCATATGGTGGGCTGTAATCACAATCACTACAGTCGGT
TATGGAGATATGTCACCTGAAACGACATGGGGCAAAATATTTGGAATTAT
TTGTGCTGTGTTCAGTGTATTCATTCTTGCTCTACCTGTATCGATTATCG
GTGAGTTTCGTCATGTTTTGTCTATCTGAGCAAGAACGGCTTATAAAGGT
TTTTCATCTTTGTATAGCCTGCATCAACAAGATCTTTTTAAGACGCAtgt
aaaaaaacattcaaaacattcaattcatgatatacaccattACAATACCG
Gttaacattacatcacggacccaacagctgattggttgaaagtgacgtat
tgactgattttacgtcaattacgaccaatcagctgttgggtccatgatgt
aatgtcgaagacattgcaatggcaTTTCATGAATATGGACGTTTCCAATA
TAGATGTTTCTTATGCTTTGTTAAGGAGTTACATATTTTCGTTCGTTAAG
Ggggtaaattgtgaaaaatcggacataaaaagaaaaaaatttaatttggc
gggaatctAATTTGGTTGATGGccgaaaaacttaattttggcgggaactt
gatttggcggatttgattTTCGCTAAATTTGCTTTCCTTAAGGTAATTCA
ACGTAATTTACGTCATTATAGAAGGAAAACGTTCGACTCTGTAGAGGCGA
CCCCTAACGCAAATCGGATGTTTGCTTCTGAAACGGTGGAAAATACTTTA
AAACGTAAAAATTAAACCTTAAACTCTTTAACGAAGCATAAGAAACCtat
atatttgatattttttcctgTAATGAAATATTGCTGTTGAGTCGTCTATG
CAGACTAGAGGGCTTTGGAATGGAAGCATCTTGACTTTTCAATTTCGGGG
CTGTTTCAGTGgtgtttgtttgttatttaaTATGAAAGAAGCAATACAAT
TCTGGTGATGAAAAATGGTATGATTATTTTAAGCATTGAATATTGATATT
GGTGATTTGAATTGCTTGGGGACCAATTCCAATTGAATGGTTTTTGCTTT
TCCTAAAGTAAATCAGTACTTTTACCTAATATTTTCCTTTTAGGTACCAA
CTTTACACTTTTCTACAACTACGCACAAGCAAGAATGAAGTTACCTAAAC
GCCCTAAACTCGCACTTGTTGGAGCAGCAAACGCCTTGAGGGCAGATACG
AGTCAACATTCATTAAGTCCAGAACCTGGAGAGAGTGAGGCGGAGGGCGG
AGATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATTGATTTAC
CAAAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACATTACAAGC
AAAAGGTATTTacaagaactttttatttttcaaaatcttggaATTTTCAA
ACCTAACCAAATTTTTACTGAACTTAACTTTGGCATTTAGTACCAGGTTG
TCTATCCCATGTAGTTTCTATATTTGGGGATTTAaagttttgacttttat
ttctaGTATAAATCGAGAATTTTTATTCCCTTCCTTAGGTTCCGACGCGA
GCGTTTATCACTATTCGCATCCGGTCCAACCCGTCAATCGACACGACGCA
GTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAATTCGACAACGGCAAAGA
AACGGAACGTCGGCGTCGCAGAAAAGTAAAGGTAGTACGCCGTCAAGTGA
GGNGGAGATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATTGA
TTTACCAAAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACATTA
CAAGCAAAAGGTATTTacaagaactttttatttttcaaaatcttggaATT
TTCAAACCTAACCAAATTTTTACTGAACTTTACTTTGGCATTTAGTACCA
GGTTGTCTATCCCATGTAGTTTCTATATTTGGGGATTTAaagttttgact
tttatttctaGTATAAATCGAGAATTTTTATTCCCTTCCTTAGGTTCCGA
CGCGAGCGTTTATCACTATTCGCATCCGGTCCAACCCGTCAATCGACACG
ACGCAGTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAATTCGACAACGGC
AAAGAAACGGAACGTCGGCGTCACAGAAAAGTAAAGGTAGTACGCCGTCA
AGTGAGGACGAAGTGTCGGAAgctgaaagtgaaaaaatcgaaGTTTTTAA
ACCAGTCAAACGTGACAATGATAATAGTGTAACGAATTCGTTTGATAACG
AAGCTTTCGAACATAACAATGAAAAACAAGTCGAAGTGGCCACGGAAGTG
ACTGAAAATGGTCACActaaccaaaataaaaagataataaaCAATACAGA
AAATGACAAAGAAACTAAGGATCTGAATTCGAAATTCCAAAAACCATTTG
ATGATGAAAAACGTGAACGTTTACCGCCAATTAACGGTGGTCCGGTACCC
ATTATAGAAACCATTCTCACCAATACAGATAACACAGACCAGAATCTTAC
GACTGGACCCATTGTGAACGGCCACGGTCCGCCGATATTAAAAGAGCCGG
TCATGAATAATCGAaactcatttaaaaaaattagctCACCACCAGTGTTA
AGAAAAATATGCGGTAATGGACTTGAACCGGTTAGGAAAAGTAACGGAAT
GGCTGTTCCGGTTGAGGAAGTTGAATCGCCGGAATTATTTCGGAGAAAGT
ATAGTAATAACCATTTGTATGTACCAACGGATGGATGTTGAGGAGATTTG
ATGTGGATACCAATGAGATATAACTGAAAGCTAGAGTCAAATGAATCTCT
gatgtaggatttgaagccacttatttcctatactcttatgtgcttaattg
taggaggtagaataagcaggggggttggtactctgggagaaaatccataa
aatgcgGGGAGGGTCAATATTAAGTGATTTTGGGGTggtttcccaaaaaa
aaaaaccctaggaaaatgaaggttttgacACTTTTTCAGTATTTTCAGGA
AAGTTTCATAATTGGGGGGTCATTGTAAAATGCTTTGTGGgtgatttttt
cagaaaaacttgcaAAATGACCCGCCCCCTACAGTTAAGCACAGAAGGGT
ACATAAGTTGGGTCCTTGTTTTGACAAAATATGGCGAACTGTGAGTTTTT
TAAAGGGTTACACCTCGCTGTTTTCCCCCGATCAATTTGTTATTTATACT
CCCTTGGACCCTTATAATAtcatatttaattttatttgcGTCTATGAACA
ATCTCTTCAGTGCTTCTGAACAATTTATATGCCAGGGAAGGTTAGTTATT
TCACTGCCACTTTCTAATGTACCATAGAGTGGTTAAACTTTCTTATTCCC
AGCTAAACTTTCCTTCAACTTGCTAATTTGTATAGGTTGTCTACGCATTT
GTACTtagcaaaatattatttttgccGGTATGACCGAGAAAAAAAACAGC
CGAAAGATCCTATAGAAATGCACCACGAATTTctgccagaaaatgaaaaa
atttagcCAATTTATATATTATTATGTTAAGATTTCATTATTATGTTATT
ATACACAAAACACGACGAATTTATTTGTAAATAACTCCAATTTCATCAAC
CTGCTATTATTACCCTATTGAAAAgaccaaaaagaaatattacaaaaaat
tatcaatttgaaTGTTTGTGTAAATTCTGtctcaatacacctttttgacc
gtagccgccaattgccgtgcgggcatttttttgttcgttttaccacccta
aaaccattCCAGTcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033080XLOC_033080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052304-exon-scaffold_213-1491911889:1196127..1196763TCONS_00052304-exon-scaffold_213-1491911889:1196127..1196763Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1196127..1196763TCONS_00052304-exon-scaffold_213-1510915933:1196127..1196763Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1196127..1196763TCONS_00052304-exon-scaffold_213-1575043694:1196127..1196763Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1197534..1197819TCONS_00052304-exon-scaffold_213-1491911889:1197534..1197819Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1197534..1197819TCONS_00052304-exon-scaffold_213-1510915933:1197534..1197819Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1197534..1197819TCONS_00052304-exon-scaffold_213-1575043694:1197534..1197819Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1198583..1198787TCONS_00052304-exon-scaffold_213-1491911889:1198583..1198787Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1198583..1198787TCONS_00052304-exon-scaffold_213-1510915933:1198583..1198787Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1198583..1198787TCONS_00052304-exon-scaffold_213-1575043694:1198583..1198787Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1200728..1200896TCONS_00052304-exon-scaffold_213-1491911889:1200728..1200896Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1200728..1200896TCONS_00052304-exon-scaffold_213-1510915933:1200728..1200896Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1200728..1200896TCONS_00052304-exon-scaffold_213-1575043694:1200728..1200896Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1201234..1201755TCONS_00052304-exon-scaffold_213-1491911889:1201234..1201755Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1201234..1201755TCONS_00052304-exon-scaffold_213-1510915933:1201234..1201755Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1201234..1201755TCONS_00052304-exon-scaffold_213-1575043694:1201234..1201755Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1202755..1202926TCONS_00052304-exon-scaffold_213-1491911889:1202755..1202926Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1202755..1202926TCONS_00052304-exon-scaffold_213-1510915933:1202755..1202926Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1202755..1202926TCONS_00052304-exon-scaffold_213-1575043694:1202755..1202926Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1203870..1204091TCONS_00052304-exon-scaffold_213-1491911889:1203870..1204091Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1203870..1204091TCONS_00052304-exon-scaffold_213-1510915933:1203870..1204091Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1203870..1204091TCONS_00052304-exon-scaffold_213-1575043694:1203870..1204091Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1204547..1204586TCONS_00052304-exon-scaffold_213-1491911889:1204547..1204586Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1204547..1204586TCONS_00052304-exon-scaffold_213-1510915933:1204547..1204586Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1204547..1204586TCONS_00052304-exon-scaffold_213-1575043694:1204547..1204586Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1491911889:1204770..1206541TCONS_00052304-exon-scaffold_213-1491911889:1204770..1206541Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1510915933:1204770..1206541TCONS_00052304-exon-scaffold_213-1510915933:1204770..1206541Clytia hemisphaericaexon
TCONS_00052304-exon-scaffold_213-1575043694:1204770..1206541TCONS_00052304-exon-scaffold_213-1575043694:1204770..1206541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1196127..1206541 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.204002	1.39453e-08	0	0	0.125652	2.88665	2.44564	0.847331	1.69991	0.153003	0.11668	1.23263	0.450891	0.335722	0.487584	0.911187	0.556384	0.989309	2.03849	0.431588	0.0112892	0.231463	0.437186	0.540529	0.691457	0.718341	0.439078	0.0803607	0.0759044
Blast
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BLAST of TCONS_00052304 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.909e-76
Identity = 167/465 (35.91%), Postives = 251/465 (53.98%), Query Frame = 2 
Query:  722 ADRIVINVGGTRHETFRSTLRVYPDTRLGWLSIDGSDVSDAFDPVLNEYFFDRHPTAFNQIMNFYRTGKLHTPADICGPLFEEELNFWGLDEKAMEPCCWPKYTEHRDAQENLKVFDSPLLNNQHDDDEIEQPAISVSRIPNYKEPEDQGFKSRFLKV-----FRPSYFNSIRWLSKKKLIWAVMEGHSERRPMLSKGVGFISLMFIVLSVLSLFF--HSMLLVISDKAE------------SNHEXXXXXXXXXXXXXXXWMSIELIIRFVSSPNRIQFLISFYTIVDLLTLITYALQFN-HGMDYHRTKDGVIDSNSITTDYKNIEMFSIXXXXXXXXXXXXXXXXQIFKHTIIASSREXXXXXXXXXXPVALFATIVYFFER---------ETNTGKFRTIPESIWWAVITITTVGYGDMSPETTWGKIFGIICAVFSVFILALPVSIIGTNFTLFYNYAQA 2029
            ++RIVINVGGTRH+T+RSTLR  P TRL WL+   +     +DP  +E+FFDRHP  F  I+N+YRTGKLH PAD+CGPL+EEEL FWG+DE  +EPCCW  Y +HRDA+E L  F    L+N  DD + + P  S        + ED+   ++ L +      RP  F    W   +  IWA+ E     R   ++ V F SL FI++S+ +     H     I +K E                     L  ++ +   W + E ++R +  PN+++F+ +   I+D + ++ + L+    G+     KD V+    +    + + +F +          R  VGL++  HT+ AS+ E LLL++ L L V +FAT++Y+ ER          +    F+ IP   WWAV+T+TT+GYGDM P+T  G + G +CA+  V  +A+PV +I  NF ++Y+ A A
Sbjct:    7 SERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDS-------GDGEDELEMTKRLALSDSPDGRPGGF----WRRWQPRIWALFEDPYSSR--YARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKD-VLGFLRVVRFVRILRIFKL---------TRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00052304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC12.909e-7635.91Potassium voltage-gated channel subfamily C member... [more]
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