TCONS_00052274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052274
Unique NameTCONS_00052274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052274 ID=TCONS_00052274|Name=TCONS_00052274|organism=Clytia hemisphaerica|type=transcript|length=1543bp
TTTGTATATAATGGCGCTAAAATCTCAATTCATTTCAAACCGATTTTCAT
TGGTAGTTTTCTTTTTGTTGGTAAATAAACAATGTCAGACTCTTGGATCA
CGGTATTATAATAACGGCGTTACTACCGATTACGATAACAATGACGGCGA
TGAAACCTTTGTCGAGGAGCCCAACCAATTTTCTCCAAGTGCTAGCCTAC
TAGATTCGAACACTTGGTATCAACTAATGTACCAATCACTTAAAATTGAT
CGTGGAAGTAAATTCCTTGGTTGTCGCTTACAAAATCGTTAcattaaata
ttttaataattcTGTGGATCAAGAGCAATACTGTGGTTACATTCCGGCGT
GTAAAAAACCGATCATTGTTCGATATACAGAGACGAAACCTTTAATATAC
TCCGAAATGAAGGGGACAGAAAAAATCATGAAAGGGCTGTTAATAGATAT
TCTAGAGGAGGTCCTTGTCCAACGTTGTTGTCTTGGATGTACAAATTTAC
AATTCGTCCATTATACCATTCCTGATGACATGTTCTTTGAGAATTTCAAT
GCATGGGAAAATGATAGCATTATTGCGCCTGTGGAATTTCGTGGAGAAGA
GAGCTCTCTCTTAGGTCATCATCTTGTACCACTCTTCCAGCATCGAAAAG
TTTATTTTCTAGGGCTTCATACTGAGATCGATTCTTACGTCTTGTTAAGA
GGAGTTATCAATAATGCTTTGTTAACTTGGCCTCTGTTCGTTACTGCACT
TTCAATGGCTGTTTTGGCCGGTGTCATCATCTGGATCTCGGAACAATGGA
GTAATGAAGAACATTTCCAGAAAGAATTCCCAAGAGGAGCCTTCGAAGGA
TTTTGGTGGGCTTATGTTTCCATGACGACTGTTGGaTACGGTGACAAGAC
ACCATCAACAGTATTTGGTCGTTTGTTTGCCATAGTCTGGATTTTAATCG
GCATCACCTTATTCAATATGTTTACGGCTGCTATTGTTACAAGTCTCAAT
AATGCAATCGCGAAACACTCCAAAGTCGAAATTGTTGGGAAGAATGTTGG
TTACATGGAATCCAAGCTTCATGTTTATAACACAATCATCAAGGAATTTG
CTACACCATCTACAGTTTACAAAAACATGTCACAGATGATCAATGCTCTC
GATAATGAAGAAATTGATGttATTGCAATGGATGCATTAGCTTACAATTA
TGCATTGAACATGATCGAAAAAGCAACAAGAACAATCCAAGTTGTATATA
TTTCTTCTTTGGAGGATTACCATGTAGGCTTTGGtgtactttccaaaaaa
aacccTTACTATAAAATGCAGAAGGAGTTTAATAAATATAACCAAGAGGA
CCTACCATTGTCTAAGaaatttttGACAACAGATTCCAAATCAACCACAG
TCATCACCAAATCTTTTGTGGGTGTAATGTTTGATGCCAGAAAGGAACCC
TTTTGGTTGACTATCACAATCACGCTAGTTGGATCCTTGCTGTTAGCTCT
TATTTGTCAATTCATCAAATGGTGTTTAGCTAATGAGAAGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_213:848393..855464+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052274 ID=TCONS_00052274|Name=TCONS_00052274|organism=Clytia hemisphaerica|type=transcript|length=7072bp|location=Sequence derived from alignment at scaffold_213:848393..855464+ (Clytia hemisphaerica)
TTTGTATATAATGGCGCTAAAATCTCAATTCATTTCAAACCGATTTTCAT
TGGTAGTTTTCTTTTTGTTGGTAAATAAACAATGTCAGACTCTTGGATCA
CGGTATTATAATAACGGCGTTACTACCGATTACGATAACAATGACGGCGA
TGAAACCTTTGTCGAGGAGCCCAACCAATTTTCTCCAAGTGCTAGCCTAC
TAGATTCGAACACTTGGTATCAACTAATGTACCAATCACTTAAAATTGAT
CGTGGAAGTAAATTCCTTGGTTGTCGCTTACAAAATCGTTAcattaaata
ttttaataattcTGTGGATCAAGAGCAATACTGTGGTTACATTCCGGCGT
GTAAAAAACCGATCATTGTTCGATATACAGAGACGAAACCTTTAATATAC
TCCGAAATGAAGGGGACAGAAAAAATCATGAAAGGGCTGTTAATAGGTAA
ACTTTTACACTTTTTCCCCATTATGCCACAAGCAGACCCGGCGGAACTGG
GGAGAGTGGGGAGACTGGGAATTTTATCTCGTTTTGACCCTTCAGCCTCC
CCCACtttaacggttgttccgccgaGTCTGACAAGCCAGTTGTCCCTGTG
GTAACCTTTCTGATACCTCTAGCTTAAAAATCCTAAAAGACTAAAGGCCG
CTATgcttttaaagtttgtatgtATCTAAATCAATTAAGTGAGCTTTTAC
CCTTTTATTCTACATCACGTgctacccagctgacacacgacgttgtttta
acgttcatgtaatgttcataacgtccatataagaacaaatcatataaaaa
tataaggcttctatgaccaaaatattaagaacaagttaaaaacattcaag
GTTTTATGGactaaaatactcacaaaatggtgaaaataaggcttaaaata
caaaaagatttcaaaaatttctaatGATAAAAAGAGTGTGTACTCCTTGT
GAGAAATATTTACCAAGTCTGCAAGTTCCTTTTTCaaatgtgttttatta
tatcaTGCAAAACCATTCATGTTTTAGATATTCTAGAGGAGGTCCTTGTC
CAACGTTGTTGTCTTGGATGTACAAATTTACAATTCGTCCATTATACCAT
TCCTGATGACATGTTCTTTGAGAATTTCAATGCATGGGAAAATGATAGCA
TTATTGCGCCTGTGGAATTTCGTGGAGAAGAGAGCTCTCTCTTAGGTCAT
CATCTTGTACCACTCTTCCAGCATCGAAAAGTTTATTTTCTAGGGCTTCA
TACTGAGATCGATTCTTACGTCTTGTTAAGAGGAGTTATCAATAATGCTT
TGTTAACTTGGCCTCTGTTCGTTACTGCACTTTCAATGGCTGTTTTGGCC
GGTGTCATCATCTGGATCTCGGTATGTTCCAATATGCTAATTGGTAAATA
CACCcgcttctcacagacccactgggaacccttcccactggaaacatttt
caaaaatatatccCCGGTGGTAAATTATCCAGCCATAAGAAATATGGGAA
TACCAATCCTTATCGAGTATTGGTCCGTTATTCTTACCTACACCGGCTGA
TAAAATCCTACCAGGTCCATGAGAAGGGGGTGCCTGATTGGGAAATTCAA
AAGGGTAAGTCAGTCAAGGTTTAAAAACCCTTGGTGGTGGTATTAGGGCA
AAAATATATGCAGGGATTTCTGCTGGATAGAGCACTTTTTTACCTGAACA
AGCTGATAGGGTCGATCCAATACACATATTTTTCAATAGGACTTTCTAAA
TAAtgcttttgtaaattttgacatCTTAACTTCTACAAAATATTAAAGTT
GTCAGATTCCCCATTGGTAATCAATTCtgtattcatagaattatagtTCA
CAAGTATCGAGCTCTATGAAGTAATATGAAATATATAATATATCTAATCC
TCGTCCGTCACCTAGTCGTCAGAGGACAGACTGGGCATTGGATAAGTCTT
CAAAACGAATATCGCGGCTTTGTTAGATTCGTCAAATCTTGGTCAAGCGC
TCTACAGAGTGTAAGAAAATGTTGCTATTTCTAGGAACAATGGAGTAATG
AAGAACATTTCCAGAAAGAATTCCCAAGAGGAGCCTTCGAAGGATTTTGG
TGGGCTTATGTTTCCATGACGACTGTTGGGTGAGAGTTTAATTCGTTCTG
CACATCgatgtttgaaaataaattatcaTCCCAGACTCGACTCAGAAAAT
TTTCAGATCTTGAAAACTTGAGAAGCCAAATAGGGACCAAAAGTACATTC
GAAATTTCCACTCTTTCACAAAATTATTTGCTCTCGAAGACggtttttat
atattatttttcttttccaagaTACGGTGACAAGACACCATCAACAGTAT
TTGGTCGTTTGTTTGCCATAGTCTGGATTTTAATCGGCATCACCTTATTC
AATATGTTTACGGCTGCTATTGTTACAAGTCTCAATAATGCAATCGCGAA
ACACTCCAAAGTCGAAATTGTTGGGAAGAATGTAAGGAAGGGGGTTACAT
CAGGGCGTaacatgaaaagaaaatccatcgACTCTGTAgactatagtcta
agacaaatcactatctaagaaataagcccaaagccgaagaaaattcgcaa
acaggCTTTTTTTATCcttcagaggttaagttttcaaagaatatattaac
ctctgaagaccaataatagaaattttatcgcgcatgtgtcaatctaatca
ctgtagaaaaaatcaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNagcaaatattaccatattaatgtc
tagcagactgtatcagtatgcagtttactatttacgaattctccagaaac
ctccaagtgtaattgaaatgagtttattttgaaggaaatcttttacatga
tccccaaatgtataacagtaattactaaacttttaattatggaaatgtcc
ctttaattgaatcgaaatagtAGACAtattttatgttatgattctctatc
actgactctttttacaaagcattgctgacttttttaagttgtgttttcaa
cgacgggaataaaaatatcaacgctgaacttcatccaagatcttggatgg
tcgtcatggttacttttgtcttcgttaattgcgcgctgaatagaatctcg
attcattggcacagcgtcaatatatgattttgacctgtgctattcacggt
aggcttttttgccaaaaagagtttacagccggtagAGTTTTCCAGTCTTT
GAAACTCTCCCGccaatttttttccgtataccgccataacgctaTACCAC
CATATCTTCCCgctcactgtaacggacgataacatacCACTCTGTCAAGG
TCCTGATGAGTTCAATCTCCGATCAAATCATACCAAAGACTTCACACTCA
AAAGAAGTAGTGTTCTCCCCTTCATTCAGGTAGGCAGCAAAACAAAATTC
TTCTTCGGATTGCTCTCGGCTTCGGTcgcatcatcatcatcatctcgACC
GCAGTCGAGTTCTGATACTTCcttcataacataaagtctgtctattattt
cgattcaattaaagtgatatttccataattaaaagtttagtaattactgt
tatacatttggggatcatgtaaaagatttctttcgaaagaaacccatact
tcaattacactttgaggtttctggggaattcataaatagtaaactgcata
ctgatacagtctgctagacattaataaggtaatatttgctcttcatcttt
gattctttcaacagtgattagattgacacatgcgcgataaaatttctatt
attggtcttcagaggttaatatattctttgaaaacttaacctctgatact
cagggtatgtATCAGTGAGATAAGTTGCTGGACTACGAGGCCCAAGTATA
TATTCAAGAAGAAAACCACAATGTGAGATTTTGTCAACAGAAATGTGCAT
GATGtaatctgcaacaaaaataaaaagaagaagaaacggGGCAAGGGTAT
CACTTTGCAAGATACCTGTTAAGATGGGAAAGTATCAGTCTCGCCATCTG
TAGTTTGGACAGAAGAGTTGGTGTCTGTATAAAGAAGCTTGATGGCATTA
TTGATTTTCGTGGGAATGCCATATAGTGAGAGGATATCAAACATTTTATC
TCGATCAACTGAATCGAaagcttttttaaagtcaacaaaTACAAGTATAG
CATCGAGATTAAAATTCCTGGCTTCTTCAAGTACGCGACGAAGGGATAGG
ATTTGTGTTAGTGTGGAGCgcccctacgaaaaccattttgatttttacga
aGAATGGGTTCCACTTTAGACCGAATCCTATTAAGTAAAAGTTTGTTGTG
CATCTTAGCCGCTATTGGAAGAAAAGATATACCACGATAGTTAGTAGCAA
GAGTTAGATCTCCCTTTTCGGAACAGGAATGATATAAGGCTTCAGCCAAT
GATTTGTGCAAACATTTTCTTCGAATGCGATATTACAAAGATTAAGAAGG
AAACCGTGGAAGTTCTAATCTTTCCAGATAATAGGTGGAATGTTATTTGG
ACCGAAAACTTTACAAGATTTAGTTTGGGAAAGGACCTAATTAAAGTGAA
AGGAGAAAGAGGAATGTCCAAATGTGGAGATATTTGTTCCCTAGGTAAAG
AATTATTTTCAGAGAGAATTGGCTTTTTGCCAAGAAGGTTTTTAAAATGG
TCGGTTGCAGACTTACTTTATTACTCGCAGTAACCTTTTCGCCGGATTTT
ACTAAGATGGTGGACAGGTGGCCAGTTTATAGCCATTTCTCACTTTTACG
GTTCACTAgatgaaatatattttcataattCTTCAGGTTGGTTACATGGA
ATCCAAGCTTCATGTTTATAACACAATCATCAAGGAATTTGCTACACCAT
CTACAGGTAATAACTAATAGGGGCTAAGCCAAAATGtgcttcttttttga
aaaaaaatgctaTGCCTATGAGTTAGTATGAAAATAGAGTAGGACTTTTg
gttacacacttttttttataagagaatggtgtaaatccattccatcatgg
atattcttaatatttttgggAAAAGCATCCTAGAATATTCTTaccacatt
cttaggttaggattctaattcagactagatttaacatttagtacatacgt
ctcaagcataaaatggcatttttgtgaaaggaaaAAGCCTTACTTGATAA
TTgttaattgacaatttataattgaaaatgctctaaagaTGGCATTCTTA
GCCattagtagcaaaattccatgatggtgatattcttggcattattctta
attttttggccattttcatcttggatattcttataaagtgtattcttata
aaaaaacatgtatcccTCATCTGTATAACTCGATAGTTATACAGCCGATA
GTATGGCTtcacttttctttgttttcaacttGGTAACATTTGccagactt
gaaattttgcgtcCAAAAAGACTATACTACAGGTACCCACTAAAGGGTAA
ACGAAATCAAAACACGCTAAAAGTTGGATATTGGACATTAAATTTTTTAG
TTTACAAAAACATGTCACAGATGATCAATGCTCTCGATAATGAAGAAATT
GATGGTAAGACAGTTCTTTAAAAACAGTCCCATCTTGATCGAGATCCGCG
GGGGAAAATGGCCGATCTTTGACATTTTGTTTTGtaatataaaatttatt
ttggcttttatGGAAGAGCCAAGTTTTCAATTTCCAATGTGTCAATATTA
CTAAAATAAAGATCCTTCCGGCATTTCCTGTTTTTTGCAAATACTAAGCA
TTTAAAAAGGTTCTGGAAACAACACAACAAGTCTATCAATAATAAACCAA
AGATTTCCTAGTCTAGCCTCTGTCATCCAGTTAGATCCAAATCACTGGAC
TCCCTAGTTGAAAATAATTCCAAGGAAGGTCATTATTTCCACTAACTAAT
CAATTGTGATCAATTGATGCAATTTAACAGGGGGTCCAAGTAATTTAGGA
TAAGGATATGGTGTCGGGCTGAGTCATTTATCAAAATCCATaccaatatt
tttattttcatttagttATTGCAATGGATGCATTAGCTTACAATTATGCA
TTGAACATGATCGAAAAAGCAACAAGAACAATCCAAGTTGTATATATTTC
TTCTTTGGAGGATTACCATGTAGGCTTTGGtgtactttccaaaaaaaacc
cTTACTATAAAATGCAGAAGGAGTTTAATAAATATAACCAAGAGGACCTA
CCATTGTCTAAGGTATGATGAATTCtgacaacctcgtccccgtgtatccc
agactttatttacgttactgattgacgtcAAAGAATATCCTAGTGTAGGC
TGTTGCTAGTATTATCTAGCCCTATTCGTAAGCATcgaaaagctgataat
acgcaggggaCGAGGTTGGAATTCTTAATGAATATAATatgatatacctt
atcggggaaaactttgtcggtgaaaattttcgtcggggaaaaaaattagt
cacttgctggtagttggtaaacgcattaaggccggggaaaattttcgtcg
gggaaaaatattcgtcacttggccgaaatttcgtcacttttccccgacga
agttttccccgataaggtacgtTATTAACAAACAAATTCTATGATGGCGA
CATTGAGTCATAAATTTTTGTGACCAAAATTTATTAGGCTTTTCTTAAAT
TATTTCAGGGGGAATAATGATGTCAAACCCCCGAATTATTTTATGAAAGC
ATTTCTAATTGATATTCCAGGAGcgacttttcaaattcaagaaaaacttt
tggaaacattatgaacaataaatatttatttcttcattttcttagaaatt
tttGACAACAGATTCCAAATCAACCACAGTCATCACCAAATCTTTTGTGG
GTGTAATGTTTGATGCCAGAAAGGAACCCTTTTGGTTGACTATCACAATC
ACGCTAGTTGGATCCTTGCTGTTAGCTCTTATTTGTCAATTCATCAAATG
GTGTTTAGCTAATGAGAAGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033075XLOC_033075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052274-exon-scaffold_213-1491911889:848393..848838TCONS_00052274-exon-scaffold_213-1491911889:848393..848838Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:848393..848838TCONS_00052274-exon-scaffold_213-1510915933:848393..848838Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:848393..848838TCONS_00052274-exon-scaffold_213-1575043694:848393..848838Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:849420..849763TCONS_00052274-exon-scaffold_213-1491911889:849420..849763Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:849420..849763TCONS_00052274-exon-scaffold_213-1510915933:849420..849763Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:849420..849763TCONS_00052274-exon-scaffold_213-1575043694:849420..849763Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:850427..850521TCONS_00052274-exon-scaffold_213-1491911889:850427..850521Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:850427..850521TCONS_00052274-exon-scaffold_213-1510915933:850427..850521Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:850427..850521TCONS_00052274-exon-scaffold_213-1575043694:850427..850521Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:850714..850873TCONS_00052274-exon-scaffold_213-1491911889:850714..850873Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:850714..850873TCONS_00052274-exon-scaffold_213-1510915933:850714..850873Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:850714..850873TCONS_00052274-exon-scaffold_213-1575043694:850714..850873Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:853279..853348TCONS_00052274-exon-scaffold_213-1491911889:853279..853348Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:853279..853348TCONS_00052274-exon-scaffold_213-1510915933:853279..853348Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:853279..853348TCONS_00052274-exon-scaffold_213-1575043694:853279..853348Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:853993..854046TCONS_00052274-exon-scaffold_213-1491911889:853993..854046Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:853993..854046TCONS_00052274-exon-scaffold_213-1510915933:853993..854046Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:853993..854046TCONS_00052274-exon-scaffold_213-1575043694:853993..854046Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:854508..854704TCONS_00052274-exon-scaffold_213-1491911889:854508..854704Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:854508..854704TCONS_00052274-exon-scaffold_213-1510915933:854508..854704Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:854508..854704TCONS_00052274-exon-scaffold_213-1575043694:854508..854704Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1491911889:855288..855464TCONS_00052274-exon-scaffold_213-1491911889:855288..855464Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1510915933:855288..855464TCONS_00052274-exon-scaffold_213-1510915933:855288..855464Clytia hemisphaericaexon
TCONS_00052274-exon-scaffold_213-1575043694:855288..855464TCONS_00052274-exon-scaffold_213-1575043694:855288..855464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:848393..855464 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.026595	0	0	0	0	0.0283409	0.102576	0.256082	0.0285761	0.0555195	0	0	0.431648	0.193902	0.0151015	0.063036	0.368434	0.540215	2.15794	3.24655	1.52796	1.06991	0.724919	0.940698	1.21233	2.04375	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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