|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052262 ID=TCONS_00052262|Name=TCONS_00052262|organism=Clytia hemisphaerica|type=transcript|length=1451bp CGAAGCGGGAGCAGCCGGGACTAATTTTCTagtgataaaaataaaagagg AAATAAATAAGCTAATATTAGCAATATCAATTCACAGTTTTGTTATTAAG GAAATGCTCATGAATGaacaaaattCACTGAATCATATAAAAATAACATA ATACAATAAATGGCAGCAGCAAGGTTCCTACTTGCAGTAGAGAGGGGTCT TCCTCAAAGACTGGTGCCATTATGGAATCATCCAGCAGGCCTACAAACAA TCCATTTCTGGGCTCCAGCTTTTAAGTGGGCGTTGGTGATTGCTGGTATT TCAGATATTGCCCGGCCACCAGAGAAATTGAGTTTCTCACAATCTTCTTC CTTAGCTGCCACTGGGTTGATCTGGAGTCGTTATTCTACAGTAATCATCC CAAAGAATTGGAATTTGTTCAGCGTCAATGTCTTCTTGTGTGGTGTGGGT GTCATGCAATGTTCCCGCATTCTTATgCATCGAAAGAAGATGGAAGAGGA AGGCCAAGAACTACCTCCATTGTTCTAAATGGAACATGATCAACAATATT TGTTCAGTTCTGCATTTCTAGAGTAACGAAACAGTACATCAAGTTGTAGG TTTATTtttttccataatGGCCAGCTTTTATTTTGCATTGAGAAAGAATT TGTGTAATGGGAGACTACaggaatttgatttttgaaaatcaatgtTGAGA TGCTGCAACTTAATTGTTTCTAATTTATTTGGAAGAGAATttgaaataac ttttacaaaactTTATATATTATTATACCTTCAAGCTGGCTACTGCTGTT TGTTTACCTTAATAAAGGATAATcagatgttttgaaatttttgacctAAA TAAACATTCTGTGGTCCTCCAAATATTTTGGCTTTACTTCTTTCTAACGA CGGCACTATTacaatttgaaatctctaaatacggttcttacgttgaaatt ttATAGTTTGCTTGCTTGTTTGTCATAAACTTGTACCATGATGATTttga atttataaaatattttgacaaaatagttgaattttttgctcaggacCATA AAAAATCTGCAGCCCAAATATATGAAACCATTTTATGATACATTTtaatg aaagtaattttttcatgagaaaattcttcattttcgtGCTCTTTCAGAAC CTTGGACATAATGTCTGCCTCAGCGATTTTTGAGCGGTAATCCATTTGAA CTATTTTTAAAATCTCGTATAATTCAATTCAGCGTAATCTAAAGCTGTTG GGGGTAACCCTCCACCGTTTCAATGGGGGTTTTACTTATTTTCCTATTAA ATAGTAAAATTAATTTGagtgtttttaaaatatttagttTATATTTATAC ACGCAGCAAGAATTAGACATTCATGCCTTTTGTTTAGGTATGATCTTAGA GaaataaattttatactttAGTATGTGGATAATTGCAACAAATTATTTTC C Run BLAST on NCBI transcript from alignment at scaffold_213:741479..749512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052262 ID=TCONS_00052262|Name=TCONS_00052262|organism=Clytia hemisphaerica|type=transcript|length=8034bp|location=Sequence derived from alignment at scaffold_213:741479..749512+ (Clytia hemisphaerica) CGAAGCGGGAGCAGCCGGGACTAATTTTCTagtgataaaaataaaagagg
AAATAAATAAGCTAATATTAGCAATATCAATTCACAGTTTTGTTATTAAG
GAAATGCTCATGAATGGTAAGCAAATTTGATCTATTTGAAGCTGGGGAag
caatcattttattttattttacaacaTTTAGATGGCTTCNGGTCCCCCCG
GGCCCCATTTCTGGGGCTTTTTTTTAACCTATTTGCTGTATTTCTCAAAT
TTGGGCCAGTAATCTGGtttcttttaagttttaagtttttttttcaataa
ttcataTTTATTTGATACTTTCCAATAGTTCTTTAAATAAACATTGCAAG
AAATCCATTGCAATACAACACCCNTTTGTTTTGGTAAAAACAATGTTTGA
CTTTAGAGCAAAGTTCTCAATGGTGATAATGACGGTGTAAACAGAGCAAT
ACAATTTCGAacacaaaattgttaaaaaactttttaaatggaTCGAACGA
AAGATAAAACTGTTGTTTCAAAACAAAGTAGAGTAATGTACGcatgtttc
aaaaactttttttggcttGACAATAGAGCAAAAGAATGGNAACGCTTTCT
TGGCATTTGGtagaacatccaaagattatctttccaacatcTCAAACTTA
ACACAGGTATTACAATCTTTACATTCATCTGTCCACTCATGTGGCAGTTT
GTTGCTCTTTgcaattgaaaaactttttattcctctgtgtttgttttgat
tttttacttggCAATTTCTGGCttgatgaaatatattttgCTCTTGTTCG
AAGTACCTCAGCTTCACCATCCTTGTCTACATTCATAATCCTTCTGCTCt
aaagaaaacttaaataaaCCAGAAAAGGTCTTCATATCATGAAAATAGTT
ACATTCAATTAACCAGAATTATGGCAAAGTTTAACTACTCACTACATGAA
ATGTTAGTCATAATCAAGATTCTATTCGAATTTCTTGCGAATTATGCAAT
TTACTCAAAATCCGATCCAAGATATGGTCATAACTTCTTTTAGCTTtatt
tctgacccctactactaatgttttttggaatcagcataaaatttctgata
atttgaCATGCCACATGACTATGTTTCAAGAAAGTTGGTGCTATTTTTGG
TCGGGGGTCGCGCTGAGTACCCCGCAGAAATGGGGCCGGGGGGGTCCCcg
gtcaaaattttttatttttttttatttttttatatataatttggCAGCTT
TTGTGCATATGCTactaattgtttttttctaacTCCCCTCCCTATAACTA
TTCTTTTGGTTATTAAACAATACCAGAAGGTATTGCATGTTAATTAAACA
ATTAACATTATTACCTGATACAACTTTATTGAAGGGAAATGTTATTAGAA
ATGGTCATGTCTGTAAAAATCTCTTCATCAAAATGCCTCGCCGTACGAAA
AACCAGAGCGAGTGAGTTTGCTATGACTAGGCTGAAGTTAATAATGCTTT
TCCCGTTATTGTTCATAGCCTTCAATTAGGAAGATTTGGTGAGTTCATGT
aagcggccgcaatcaaaaaaacttatattcatgtcataaaaaaaattatt
tggctgTAAAAAATATTTGCAACAGTCTAGaaatttctccaattttcgaC
AATGATAGAACAAACCTATATAAACATAAAAACTATTCAATTTTTATCTT
TCTccttcttcatctttaatgAAGCACTATAGAATTAAGTGCATAAGATA
TTCTTCTAAACATGAAATGCCGTTAGCGCTTTCTCTAcggtggagtgtat
gacgtaacttGCGAGGCAACTAACTCGTCTTCTGTTGGCTGATCATATTT
GGCATTTTGGCGTTACCACACCCGAAGCAGCAGCATCTTTCCGCAACTCT
GCtatccaccattttaaatgagttagcaatagatccaaaagggcgcccaC
ATcatggaagataatttgttttggtctccggttTTAGGAAGTATTGATGT
TTTcagttgttttcgatggaaaatagtaagaaactttAAGTTTACAATCA
GTTACAATGTCATtcagtttttgctggctgatagaatggcaggatcctgg
atggcttCCCTAACTGGACTTAGcacttaggttcagttgccaaattccat
gatggtgatattcttagcatttattctaaattttttttgcaaatttcatc
atagaaattcttataaaggatattcttataaaaaaactgtgtATTTTAGT
TTCCCCATTGGTAAAAGTTGAATAATACTGGTAAGTATCCCTGAGTACCC
AGGGATCAGAATTAGTACCTTAAGTGGCCAACTACTCCAGGTTAAAAGTT
TCCTTTAAAAAGtcacaaggaccatcagcaggcAGCACAAAGTGCTTCCA
AACTCAGATTaaacaaagtttgaagccctctaagCCAAAGGAGGAGCTAA
AgatttttttggggaaaattttggagacccAATTTTATTCTTCCCGATTC
CATACAAAAAGTTAACTCCACTGTAATGTAAATCACCTTCTTAATGAACT
TGAATAAAATttattggctttcaaaatctgcttcTCACAGAGTCTACCAA
TTTTAGAGAATCAATTTTTGCTTTAAGATTATCATTAAGACGCAGTAAAA
TGACTATAATAACCTAAAAGAACCTAagaaattttatattatattcaATA
ATAATATGTATGAATTATTTTGAATATATGAGATTAGTGTTCTTCCTTCA
AATGACAATTTACCCTTTCAGgaatatttctcaaaaagaaATCGGCAAAA
AATGACATCAAGCATGCTTGTAGAAGTTCACAAATGCCTCAATAACATAT
CCAATTTACTGAAAGAAGTTATTTTGTTCACTTATGGACAGGAGCCtcga
tcaaaacaaaaaaagttttttctagtTGGATATGAGCATCGCAAAGGGTT
CTCCAAGAAAATATTtggtgacccaaaaaattgtGATGAAGGAGTTGACT
TAAAATGGCAATTGCGTAACATCCGATGGCATTTAGCAAAGTATGCAGAA
CTTATGAATATGTATGAAGATGTTTTGGATGATTTGACTGGTTTTTTATT
GGATACAACATTCCAATGTTATCTTGGATCAGCTCGTCTTCACAAAATGT
TGGCTGACCCTAACCTGCTCAATGATTGTGTAGAGGTTTGTTTGGAAATT
GTTGGTGCTATTGAGGATGCAGGTTTCTATCAAGGTATTCATACCATTGC
AAGTGAATTGAGAAAGAAATTAGAGCATCAAGAATTAAATCAAACACCTG
GTAGTTCTACCAAAGCTTCTAAAGATACTGAAGAAACACTTGTCAAAAAC
GATTTTATTGGAGCACAGAAATCTACTGATAAAAAACCAATAAGTAACTC
AATTCACACACAATTCggtaaaaaaattgatgaagataGTGGCATATTTG
GAGATGTGTCTGGCATATCTGGTCATGTGCAAACCAGTGTCACAAGCACG
CTTGTACAGGATAACAAGAAAAGCACTCGTCAAAAACCAACAACTAGTCC
CCATACCCCAATGCAGACAGCTACACCTGGCAAACACCAATCTTTCTCAT
CTCAAAGGTTGCAACAAAAGAAGTTAGACACCAGTATGAATTCCAGTATG
GTCATTATTGATACACCAACGATCAAAAATAAACCAATTGACATTTTGAA
GCAAACTTCAAACTCATCACAAAAGAAGAAAACGCCACTTTCATCTTTAA
AGAAAAGATCCAGCAAAGATGATGAAATGGATGGTTCTTTCGTCTTGATT
TGAAACTAACTCTTTATAAAAAGAACAGAATAATAAGAATGCTTATGAAT
AAAATTCTGCGTTTCTTCAGAtgtattttcgtttttttactGTATGAAGA
ACAATTTCAGATAATAACGAACTGGTTGAAAGAACCAGTTGCAAAGGCAC
TAAACCCTAAATTGCAAAATGTTGTACTTTTTACACTATTTTTAACCAGC
attagatagaaaaaaataaaatatttttattttttaggaatcacactctt
cacagaaactattttattatttaagttagcattttttgtagaaaatattt
tacttttttgtaacgtttttatttaaaaaaaacaagttttccaGTTCTAT
GTACATTTGAAGGTCATTGGTAAACGTAGATTTTAAAGGGTTGTTTACTG
TATTATTTTCAGTGTTGAAGATATCTGCCCAGGTCAATTTTCTAATGTGG
ATTTCTGTCCCAATAAACAGGCCTAGCAAAAGGGATTTAAAAGTTTAGGT
TTGACTTTGAAAATGTAGACTAACAAAgctggtttcttttgttgtaacGT
TTGAATTATTCAGCTTCTTTTTTTCATGGGAATTAGTTGTCGTCGGCTGC
ATTAAGAAATTATTAAAATGCAAAATAgagtattttgtaaatttggcACT
TTATTTTATGTGACATTATGAGACTTAGTGTTTTGTTGGTAGAGCTTTTA
TTAGGAGATTATATTATAAACTGTATTTGAAGGATAAAATTGGTCTGGAA
AAAATTACTTCATCTTATTGGTGACTTTTTTTTAGCAAtagaaaatgatc
aatttcGATTTGACTCATTTGAGTGATTTCTACCAGTTAAATTTTTTGGG
GCATTTCCATCTTTTAACAGCAGCGCTTTACGAATTCCCTTACCTTTTGA
TCACATATCATGACTTTGCTTAGATATATGTTATTCTACAttttttttag
aacaaaattCACTGAATCATATAAAAATAACATAATACAATAAATGGCAG
CAGCAAGGTTCCTACTTGCAGTAGAGAGGGGTCTTCCTCAAAGACTGGTG
CCATTATGGAATCATCCAGCAGGTTTGAAGTCATTTTATTTgtgattttc
ctttttgttttaCTATTTTTAGTTGAACTGTATCAAGTCAACGTATACGT
TAGTAGGTTGTACGTAGTGCGTTATCCAAGAACAATGTCAATTTAATGTC
CATAACAACTGAATAATGTTTATTGATGTTGTGTCGACGTTTAAACAACG
TCATGTTAGAGCTGTATTCAGTGCATGCTAACAGtgtcttcaaaatttca
ttttcttgttcGTTCCAGACGACTTACTGCCACATTACTTCAGATGTAAT
CTGCTTTCTTGTTTGATTTGAACTTTTCTATAAATACAAAATTCTCATCt
ctcttttttgtttctttacagGCCTACAAACAATCCATTTCTGGGCTCCA
GCTTTTAAGTGGGTAAGTGGGTAAGCTTAAATTTTGGGTTCATTGAAGTG
GGATTATTCCATGGGGATTTGACCAGATTTGACAAGTTTTTACTAAGTTA
TacgaaaaattcatttttcgtGCTCGTGGTATTTTATCAATCTGATCAAC
ACTTAACCTTTTCATAATTTAAATTACAACTATATATTTTAGCGTGTATT
TAATTCCGCGAGGTTTTAGGCAAAATCTCGAAAAATTTAGTTctgtttga
atttttcaaaaacGCAAAATCACGAAATTTTTGAAAGGTAGAAGAAAAAT
GATTTTTTAAGGGATCAGTGATATTTTGTTACAGTTTCGATACTATTTTC
TGCACCTAATACGTTTTATTTAAGCAAAACCAGTCTTTTTTGTTTTACTT
TAATCGTAGAAATTTTAACGAGACTAATTTTAGCGTTTTAGCGAGTTTTC
CCTATTTTCGCTAAAATAAATCTCGCTAAAACACGCCGAATCGCCAGATC
GCTAAAATTTATCCGCGTGAAATTTCTGGTTATATTGCCTTGATACATTT
TCATCAATAGGAAGGGTTTTAGTGCAAAGAAATGCTAGAAAACGAATTCA
ATCAATAATGTAATACGAGTATTTGCTAGAATTTATCCACGCAAaatttt
tgaaatcgtgattcgctaaaataaatccaaaaaaaatcaagattttcctg
actcgctaatatacgctaaaattagtctcgctaaaatttctacgatgaAA
GTAacctttttcttgaaaaatatccAACTTGGTGAATTTAATACACATGA
AAAATTCCAGAAATTGGCGATTGCGAAATTTAGTACCTgcgaaaatatat
acacttAAGGTACACTCTTCTTTTACAGGCGTTGGTGATTGCTGGTATTT
CAGATATTGCCCGGCCACCAGAGAAATTGAGTTTCTCACAATCTTCTTCC
TTAGCTGCCACTGGTATGGAATGGTTTTCATTTTGATGCGTATTTCTAAG
AATTCAATATTTTAGAGTGAAAAATAAGTGTTTACATGTTCTTAAATGCA
TTAAAAACCTTATTTAACAGGCAAATTTTGAATTAGTTTTTGTTAAAACA
CTAGTAAATTTGAGTTTGATAATCCTGAGTGGTCCAGAAATCATACTTTC
TCGTCAATTAACACCTATGTATTTTCTCATTTCTTCACAGGGTTGATCTG
GAGTCGTTATTCTACAGTAATCATCCCAAAGAATTGGAATTTGTTCAGCG
TCAATGTCTTCTTGTGTGGTGTGGGTGTCATGCAATGTTCCCGCATTCTT
ATGTAAGCGTCCTTCTTCTTCATTCTCTGCTTAAGAAGTTATTTGTTTTC
AAAGCATTTGCATCATGTTTTGTAGCAGTGCTGTGTTTTTATGATTTCTT
GATCCATTCAAATTTATCCGATGAAAATTGGATGTACTTCTGGTGAAAAA
AGATCtgttaaaacagttaaaagaaGCGACAAAGTTTTGTGTACTTTTTT
GACTTTCGTTAGACTCTCATTTTTTGTACTTTTCGATTCGTTTTTCGAAA
GTTTGCTTGTCCACTATGTGACATTAATGGGGACActattcgaatcaatt
ttgcgccattgtcccagggacataatcagcgtgtcttttgggtatttccc
tcacgttttgtcccatgaaacaaaaaaagaaacaattagCATTAGACatg
cactttttttcttgtgttggtgggatggagcatgttgcgtTGCACCAACG
TGAAAAAACTTCtggtgtccccaagccttaagacACAGcgtatttctttt
ctttcttaggCATCGAAAGAAGATGGAAGAGGAAGGCCAAGAACTACCTC
CATTGTTCTAAATGGAACATGATCAACAATATTTGTTCAGTTCTGCATTT
CTAGAGTAACGAAACAGTACATCAAGTTGTAGGTTTATTtttttccataa
tGGCCAGCTTTTATTTTGCATTGAGAAAGAATTTGTGTAATGGGAGACTA
CaggaatttgatttttgaaaatcaatgtTGAGATGCTGCAACTTAATTGT
TTCTAATTTATTTGGAAGAGAATttgaaataacttttacaaaactTTATA
TATTATTATACCTTCAAGCTGGCTACTGCTGTTTGTTTACCTTAATAAAG
GATAATcagatgttttgaaatttttgacctAAATAAACATTCTGTGGTCC
TCCAAATATTTTGGCTTTACTTCTTTCTAACGACGGCACTATTacaattt
gaaatctctaaatacggttcttacgttgaaattttATAGTTTGCTTGCTT
GTTTGTCATAAACTTGTACCATGATGATTttgaatttataaaatattttg
acaaaatagttgaattttttgctcaggacCATAAAAAATCTGCAGCCCAA
ATATATGAAACCATTTTATGATACATTTtaatgaaagtaattttttcatg
agaaaattcttcattttcgtGCTCTTTCAGAACCTTGGACATAATGTCTG
CCTCAGCGATTTTTGAGCGGTAATCCATTTGAACTATTTTTAAAATCTCG
TATAATTCAATTCAGCGTAATCTAAAGCTGTTGGGGGTAACCCTCCACCG
TTTCAATGGGGGTTTTACTTATTTTCCTATTAAATAGTAAAATTAATTTG
agtgtttttaaaatatttagttTATATTTATACACGCAGCAAGAATTAGA
CATTCATGCCTTTTGTTTAGGTATGATCTTAGAGaaataaattttatact
ttAGTATGTGGATAATTGCAACAAATTATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052262-exon-scaffold_213-1491911889:741479..741594 | TCONS_00052262-exon-scaffold_213-1491911889:741479..741594 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:741479..741594 | TCONS_00052262-exon-scaffold_213-1510915933:741479..741594 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:741479..741594 | TCONS_00052262-exon-scaffold_213-1575043694:741479..741594 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1491911889:746229..746350 | TCONS_00052262-exon-scaffold_213-1491911889:746229..746350 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:746229..746350 | TCONS_00052262-exon-scaffold_213-1510915933:746229..746350 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:746229..746350 | TCONS_00052262-exon-scaffold_213-1575043694:746229..746350 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1491911889:746700..746740 | TCONS_00052262-exon-scaffold_213-1491911889:746700..746740 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:746700..746740 | TCONS_00052262-exon-scaffold_213-1510915933:746700..746740 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:746700..746740 | TCONS_00052262-exon-scaffold_213-1575043694:746700..746740 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1491911889:747607..747691 | TCONS_00052262-exon-scaffold_213-1491911889:747607..747691 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:747607..747691 | TCONS_00052262-exon-scaffold_213-1510915933:747607..747691 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:747607..747691 | TCONS_00052262-exon-scaffold_213-1575043694:747607..747691 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1491911889:747919..748030 | TCONS_00052262-exon-scaffold_213-1491911889:747919..748030 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:747919..748030 | TCONS_00052262-exon-scaffold_213-1510915933:747919..748030 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:747919..748030 | TCONS_00052262-exon-scaffold_213-1575043694:747919..748030 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1491911889:748538..749512 | TCONS_00052262-exon-scaffold_213-1491911889:748538..749512 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1510915933:748538..749512 | TCONS_00052262-exon-scaffold_213-1510915933:748538..749512 | Clytia hemisphaerica | exon |
TCONS_00052262-exon-scaffold_213-1575043694:748538..749512 | TCONS_00052262-exon-scaffold_213-1575043694:748538..749512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_213 | supercontig | scaffold_213:741479..749512 + |
Blast
BLAST of TCONS_00052262 vs. Swiss-Prot (Human)
Match: MPC2 (Mitochondrial pyruvate carrier 2 OS=Homo sapiens GN=MPC2 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.792e-35 Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 172 RFLLAVERGLPQRLVPLWNHPAGLQTIHFWAPAFKWALVIAGISDIARPPEKLSFSQSSSLAATGLIWSRYSTVIIPKNWNLFSVNVFLCGVGVMQCSRILMHRKKMEEEGQE 510
R L VE LP++L PL+NHPAG +T+ FWAP KW LV AG++D+ARP EKLS +QS+ L ATG IWSRYS VIIPKNW+LF+VN F+ G Q RI + ++++ + +
Sbjct: 15 RLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQELKAKAHK 127
The following BLAST results are available for this feature:
|