|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=transcript|length=2237bp TTTCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA CTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATC CTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGAT CATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGT CACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTG ACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTG TTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGT TGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACT CTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTC AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC ATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGT TTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGT TTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCG GGACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGG AATCTTTTAACGTAATACGACTTTTCTTCGTAACACGTGTGTTGGAAATG TGTAGCGATCGGGTCACGGTTGACGTATTACGTCTCTTTTGGTAATGTGT TTTGTTGTTAATGTGTTGCAATGGGATCACGGATGACATATCATGATAGC GAAGGATAAATAGTTCCCAAAATCAATGCGTCTTAGAGGAAAAACGACAC CATCAATGTACACTTTACATATTCTACACGGACATAATGTCGGTTTCCAA TACTAAAATCTACGAAGTGGTCTAAATAATATTCCCATATACACTTATGA AGTAAACATTTAATTATACCCATGCATTTGCTTGGTACATTTTTCTCCTT TCTGTTGGACCTGTTTTGTTGAAATATAAAACGACCACTTTTTTCAGTGA ACAATTATCTGAACTTCTTAACATACTAGTAGGGTCTCAGGTCCCGTGGC AATTTTTATAGGACTAAACGAAACCTGTTCCATTTCAAAATTTAGTATAT AATTAGAATTTTTTGAGAAGAGTCAAATTTTTAAGGCCCGGGAAAATCTt ttgtgaccaaaatagtgacgccataggcaaaactgcaagggaaaataagg ggtagagaaatagcttaaaagtcaaaacaaacgataatgattggtaccat ctgatagaGTATGAagttctgagcaaaaaattgtattacaacaactctct gactaaaacacacaaagaaatagaactgctttaagaccaactaactgtca gctctactgtgattttgacgtcaaatcttgtcttgattGTACTGgcgtcg gtatgtttttgaacttcaagcggCTCCCCCCTACTGCCCCCTAACTATAC GCTTCTTGATTCAGAGGCTTTCACTCAATTGGAATTAAGCATTAAACAGC GTAGACGAAAAATTTAAGTTCCATATTCTCTCCAACTCtggtaaaaagtt ttttctgaaattgttaGCATTCTGTAAATAGTTTATTTTTAACATTCTTA AAAACTGACATGCAAACACTTCTTTCAAAATACTGAAATTCGAGAAAACC GTTTTGAATAGGGGTAGACATGAATATATATTAATTTCGATGATTTAATA AATGCCCTGGATATTAAACTACTGCAGGTTAGTCGTG Run BLAST on NCBI protein sequence of TCONS_00052257-protein >TCONS_00052257-protein ID=TCONS_00052257-protein|Name=TCONS_00052257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
SVKRKRKKERKTKMDIPANHNTTTNDIFTDTANNAINTILLMSASLLSTL GTLVTITTYFFIKDIKTMSRHIIVCISVADLLTCLANLSGLLMSPTKHNT SPVGCQVQSFLGTTAILSSFLWTLMLAVYLHMIIVEERIDQAKRLIIPWS HVICWPVPLIINVVALTTGALGNDGDQTSAGWCWIKVTGAEHSTVVLWML VDGKGLEILTYIVIVTLVIKMKLHLKIKIRNYSRTESPYGTFLTRKTMMV AKQADRKLIFIPIILIILRIWGTIRFFIYLFNTGCTKDRLWLCQGLLYLH TLGDNLQGAMNCILYCFFTPKVYNSIVQLLCNVCCRNTCCKCCTIGSRGG TYESFETYTDDDEEDRNLLT Run BLAST on NCBI transcript from alignment at scaffold_213:687162..691937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at scaffold_213:687162..691937+ (Clytia hemisphaerica) TTTCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT
CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA
CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC
TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG
ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC
TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA
CTTCTCCAGTCGGAtgtcaggtaatatttcaattACGATTTCCAAggcgc
aaatttttttgaaaaatgcggaaattttcaccttttcgactgtagacgcc
aattgccgcgcaggcatttttttgtcccttttaccaccctaaaaccgtct
cagtcttttttcgcacctacagacaatagaaaaaggtttaAAGAGGTTTA
AAGAGAGGATTTGATcaagtttagggggataattaaataataaagtggca
cgcgcctgaccgcgcaactacggtcgaaaaggtgtattgcatggaatagt
tttttttcaagCTGGCAGAAAAGCTGGAGAGTTAGACAAAGGTTTTTGAT
ACAATGAGAAAggtatttttatactttttcaaACAGTGTTCTGTTTATGC
ACTTTTAGATAAGGTGGTCAGGAGTTACAGCCTTAAGTCAGGACTCGGTA
TATTGTCAAGTTTTAAAACGCGTCACTCGGGTTTGAAGGGTTAAGTCTCT
ATTCGAAACAGTTCTAGTGAAACACGGTAACACAAACAACCAACTACTGA
TAGAACCTATAAAGGGATAGAATATGACAAAAAAGTGTAAACAATACAAA
ACTTCTGAAAGGGTTCTGAAAATAACGTACATGATTGTTAGACCAAAACT
TGCGTAGAAATCCACTTCAGCACAACTGATGAAAAGGTAAAAGGTTTTTC
ACATGATGATCGTAAACACAAGAAATAAGAGATTCTTGCTGCGACACTTT
TCATTATTCAAACATTTACAGGTGCAGAGTTTCTTGGGTACAACAGCTAT
CCTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGA
TCATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGG
TCACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTT
GACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGT
GTTGGATTAAAGTCACTGGTGCAGGTAAATTAATTTGTTTTTCCccgaaa
cagaaaaaaaaagaaaattctacACCAAGTACATCTGCCAAACTCAAATG
TTTGAATTATCATGGCTGAAAAATGTATGAAATTGAAAACTGTAGATATG
GACCTACCTTGTACCATAACGTAACTCACTGTTATCGTtttgtagtacac
tctgtgcgtcttgtctgtttgataaaaaaaattcccatATACAaaaacct
ctgcgatgaagtatgatttataaatagtcacacttctctcgtcgtctccc
GTCATCTCCCGTCTCTCTCCCGCACTCCGCAtctcaaatcaaaaaagaca
tgaaaacagaccctctacggcaatgaattttgaaattagccgtagatatc
gggtcggGTGTACAGAATAATGTGGACCGAACAACGAATTAACAAACATT
CAAAATGAGAATATTCAATATTCTTTGTTACATAGCTTATATACGGGTCC
ATATACGGGTCCATATATAAGCTCTGTTTGCTACTTTGAAGTGTTAAGGA
TCAAGTTAACTCAGAAaaaactttcactttcttttcatCACGATAGAACA
TTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATTC
TGACCTACATTGTGATTGTCACTCTTGTCATCAAAATGAAATTACATTTG
AAAATAAAGGTAAGCGTTTGGtgtttttaataagaaattAATATACCATG
TTTTCGTTCCAATAagtttttttcctattttcttattatggaagcaaacg
ttcgatatGCGTAAGGGATcgcctctacagattcgaaaGTTTACTTCTAT
AAAAATGGAAATTACGTAAACAAAACATGATATAGCTCTTTTGAAGATTA
TATACATCACTAAAGAGGGGCTAGGTTTACGAGGAACACTAGGTATGCTA
ATGGATGGATATGCCTGGGAAAAAAtcgcaaatcaaaacaaaaaattttt
gtctcGTTTAAATCTGCAAATCGTTGTGTTgctgtagaaaacattacgtc
atgaaaatCAGGAATaatcaaatttcatccaaagcATGGCTAAACTTTAA
AGAAATCGTGACTTTTTTGAGGGGCAGAAGATTAATGATTACGAAAATAC
TTCTTGCTTTTGCCCGACatgaataattttttctagATTCGAAATTATTC
AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG
TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC
ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC
TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC
ATGTAAGTATAGAACAGTAGAACAGTTGtgactgaaaaaaatatttattc
tcaGTTTTTATATATCAgggtttaaaggttttatttttacatgagtctgt
tcccgtttcatatcgcctattgttatattatgctgatataaacaaaaaaa
aatattttcctttttctgaccaatcttgctccacacccgtgtcaattcaa
taggAAAAAGCTTGCAAAGTAAAATTGACCAGAAAGCAAACGAAATcagt
cttatttaaaaacaaaacctttattaTTACAGTGataaagacactttttt
atagtttagtttttttttctaacgCCTAGTTGGGAAGATTATCCGTAGTg
gaaatgggccattccattttatatctatgcaggggggtggacgaacattt
ccaggtaGTAATCCGAGAAAAGtttccagggggtgttttttcatttttcc
aagggggtaaaaagtcaTTGTTACagggtatttttgcaaattttgccatt
ttccaaggGCTattcacacattttcaataatcttttttgacttgaaaagg
ttattcgtccacccccccctgtatggttttttaatggaacagcccaatgc
aTTGATAGTACTGTATTTAACAAATATTGGCAACATTAGCAGACCCAAGT
CCTTTATAGAGCAGACTTAAAGGCGGTGCCTTAGCTCTAACCACGTCCTT
TTATGCAGGCAGTGAACTTAGTTTTCTTTCTCACTTTACAGACACTTGGC
GACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTTCTTCACACC
TAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTTGTTGTCGCA
ACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGGACGTACGAA
AGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAATCTTTTAAC
GTAATACGACTTTTCTTCGTAACACGTGTGTTGGAAATGTGTAGCGATCG
GGTCACGGTTGACGTATTACGTCTCTTTTGGTAATGTGTTTTGTTGTTAA
TGTGTTGCAATGGGATCACGGATGACATATCATGATAGCGAAGGATAAAT
AGTTCCCAAAATCAATGCGTCTTAGAGGAAAAACGACACCATCAATGTAC
ACTTTACATATTCTACACGGACATAATGTCGGTTTCCAATACTAAAATCT
ACGAAGTGGTCTAAATAATATTCCCATATACACTTATGAAGTAAACATTT
AATTATACCCATGCATTTGCTTGGTACATTTTTCTCCTTTCTGTTGGACC
TGTTTTGTTGAAATATAAAACGACCACTTTTTTCAGTGAACAATTATCTG
AACTTCTTAACATACTAGTAGGGTCTCAGGTCCCGTGGCAATTTTTATAG
GACTAAACGAAACCTGTTCCATTTCAAAATTTAGTATATAATTAGAATTT
TTTGAGAAGAGTCAAATTTTTAAGGCCCGGGAAAATCTtttgtgaccaaa
atagtgacgccataggcaaaactgcaagggaaaataaggggtagagaaat
agcttaaaagtcaaaacaaacgataatgattggtaccatctgatagaGTA
TGAagttctgagcaaaaaattgtattacaacaactctctgactaaaacac
acaaagaaatagaactgctttaagaccaactaactgtcagctctactgtg
attttgacgtcaaatcttgtcttgattGTACTGgcgtcggtatgtttttg
aacttcaagcggCTCCCCCCTACTGCCCCCTAACTATACGCTTCTTGATT
CAGAGGCTTTCACTCAATTGGAATTAAGCATTAAACAGCGTAGACGAAAA
ATTTAAGTTCCATATTCTCTCCAACTCtggtaaaaagttttttctgaaat
tgttaGCATTCTGTAAATAGTTTATTTTTAACATTCTTAAAAACTGACAT
GCAAACACTTCTTTCAAAATACTGAAATTCGAGAAAACCGTTTTGAATAG
GGGTAGACATGAATATATATTAATTTCGATGATTTAATAAATGCCCTGGA
TATTAAACTACTGCAGGTTAGTCGTG Coding sequence (CDS) from alignment at scaffold_213:687162..691937+ >TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=CDS|length=5565bp|location=Sequence derived from alignment at scaffold_213:687162..691937+ (Clytia hemisphaerica) TCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATTCC TGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAACA ATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTCTT GGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAGAC AATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGACTT GTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATACT TCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATCCT TTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGATCA TTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGTCA CACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTGAC AACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTGTT GGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGTTG GTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACTCT TGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTCAA GAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGGTA GCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATCAT ACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATACTG GCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGCAT ACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTT CTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTT GTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGG ACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAA TCTTTTAACGTAATCAgtaaaacgaaaaagaaaaaaagaaagaaaaacga aaatggACATTCCTGCCAACCATAACACCACAACAAATGACATATTCACA GACACCGCAAACAATGCAATCAACACtattttgctgatgtcagcatctTT ACTCTCCACTCTTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCA AGGACATCAAGACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCA GACCTTTTGACTTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAAC AAAACACAATACTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTA CAACAGCTATCCTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTAC CTCCATATGATCATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGAT TATTCCTTGGTCACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATG TGGTTGCCTTGACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCA GCTGGATGGTGTTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGT TCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTG TGATTGTCACTCTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATT CGAAATTATTCAAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAA AACAATGATGGTAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCA TCATATTAATCATACTGAGGATATGgggaaccatcagatttttcATTTAT CTCTTTAATACTGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCT ACTTTATCTGCATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTA TACTGTACTGTTTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTA TTATGCAACGTTTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGG ATCACGTGGCGGGACGTACGAAAGCTTCGAGACGTATACGGATGACGATG AAGAAGATCGGAATCTTTTAACGTAATCAgtaaaacgaaaaagaaaaaaa gaaagaaaaacgaaaatggACATTCCTGCCAACCATAACACCACAACAAA TGACATATTCACAGACACCGCAAACAATGCAATCAACACtattttgctga tgtcagcatctTTACTCTCCACTCTTGGTACCTTGGTCACTATAACAACG TATTTCTTTATCAAGGACATCAAGACAATGTCCCGTCATATTATTGTGTG TATCAGTGTGGCAGACCTTTTGACTTGTTTAGCCAACTTAAGTGGATTAT TGATGTCACCAACAAAACACAATACTTCTCCAGTCGGAtgtcagGTGCAG AGTTTCTTGGGTACAACAGCTATCCTTTCCTCATTTCTTTGGACACTGAT GTTAGCTGTCTACCTCCATATGATCATTGTAGAGGAGAGAATTGATCAAG CAAAACGATTGATTATTCCTTGGTCACACGTAATATGTTGGCCCGTTCCG CTAATTATCAATGTGGTTGCCTTGACAACCGGTGCACTTGGTAACGATGG TGATCAAACGTCAGCTGGATGGTGTTGGATTAAAGTCACTGGTGCAGAAC ATTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATT CTGACCTACATTGTGATTGTCACTCTTGTCATCAAAATGAAATTACATTT GAAAATAAAGATTCGAAATTATTCAAGAACGGAGAGTCCATATGGAACAT TTCTCACTCGCAAAACAATGATGGTAGCAAAACAAGCGGATCGAAAGTTG ATTTTTATCCCCATCATATTAATCATACTGAGGATATGgggaaccatcag atttttcATTTATCTCTTTAATACTGGCTGTACGAAAGATCGGTTGTGGC TGTGTCAAGGTCTACTTTATCTGCATACACTTGGCGACAACCTTCAGGGT GCAATGAACTGTATACTGTACTGTTTCTTCACACCTAAAGTTTACAACAG TATCGTTCAGTTATTATGCAACGTTTGTTGTCGCAACACGTGTTGTAAAT GTTGCACGATTGGATCACGTGGCGGGACGTACGAAAGCTTCGAGACGTAT ACGGATGACGATGAAGAAGATCGGAATCTTTTAACGTAATCAgtaaaacg aaaaagaaaaaaagaaagaaaaacgaaaatggACATTCCTGCCAACCATA ACACCACAACAAATGACATATTCACAGACACCGCAAACAATGCAATCAAC ACtattttgctgatgtcagcatctTTACTCTCCACTCTTGGTACCTTGGT CACTATAACAACGTATTTCTTTATCAAGGACATCAAGACAATGTCCCGTC ATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGACTTGTTTAGCCAAC TTAAGTGGATTATTGATGTCACCAACAAAACACAATACTTCTCCAGTCGG AtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATCCTTTCCTCATTTC TTTGGACACTGATGTTAGCTGTCTACCTCCATATGATCATTGTAGAGGAG AGAATTGATCAAGCAAAACGATTGATTATTCCTTGGTCACACGTAATATG TTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTGACAACCGGTGCAC TTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTGTTGGATTAAAGTC ACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAA AGGCCTGGAAATTCTGACCTACATTGTGATTGTCACTCTTGTCATCAAAA TGAAATTACATTTGAAAATAAAGATTCGAAATTATTCAAGAACGGAGAGT CCATATGGAACATTTCTCACTCGCAAAACAATGATGGTAGCAAAACAAGC GGATCGAAAGTTGATTTTTATCCCCATCATATTAATCATACTGAGGATAT GgggaaccatcagatttttcATTTATCTCTTTAATACTGGCTGTACGAAA GATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGCATACACTTGGCGA CAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTTCTTCACACCTA AAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTTGTTGTCGCAAC ACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGGACGTACGAAAG CTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAATCTTTTAACGT AATCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA CTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATC CTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGAT CATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGT CACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTG ACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTG TTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGT TGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACT CTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTC AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC ATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGT TTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGT TTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCG GGACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGG AATCTTTTAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052257-exon-scaffold_213-1491911889:687162..687481 | TCONS_00052257-exon-scaffold_213-1491911889:687162..687481 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1510915933:687162..687481 | TCONS_00052257-exon-scaffold_213-1510915933:687162..687481 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1575043694:687162..687481 | TCONS_00052257-exon-scaffold_213-1575043694:687162..687481 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1491911889:688233..688485 | TCONS_00052257-exon-scaffold_213-1491911889:688233..688485 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1510915933:688233..688485 | TCONS_00052257-exon-scaffold_213-1510915933:688233..688485 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1575043694:688233..688485 | TCONS_00052257-exon-scaffold_213-1575043694:688233..688485 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1491911889:689058..689170 | TCONS_00052257-exon-scaffold_213-1491911889:689058..689170 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1510915933:689058..689170 | TCONS_00052257-exon-scaffold_213-1510915933:689058..689170 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1575043694:689058..689170 | TCONS_00052257-exon-scaffold_213-1575043694:689058..689170 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1491911889:689648..689863 | TCONS_00052257-exon-scaffold_213-1491911889:689648..689863 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1510915933:689648..689863 | TCONS_00052257-exon-scaffold_213-1510915933:689648..689863 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1575043694:689648..689863 | TCONS_00052257-exon-scaffold_213-1575043694:689648..689863 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1491911889:690603..691937 | TCONS_00052257-exon-scaffold_213-1491911889:690603..691937 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1510915933:690603..691937 | TCONS_00052257-exon-scaffold_213-1510915933:690603..691937 | Clytia hemisphaerica | exon |
TCONS_00052257-exon-scaffold_213-1575043694:690603..691937 | TCONS_00052257-exon-scaffold_213-1575043694:690603..691937 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_213 | supercontig | scaffold_213:687162..691937 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
Term | Definition |
GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
BLAST of TCONS_00052257 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 2.100e-18 Identity = 81/230 (35.22%), Postives = 127/230 (55.22%), Query Frame = 3
Query: 315 CQVQSFLGTTAILSSFLWTLMLAVYLHMIIVEE-RIDQAKRLIIPWS-HVICWPVPLIINVVALTTGALGNDGDQTSAGWCWIKVTGAEHSTVVLWMLVDGKGLEXXXXXXXXXXXXKMKLHLKIKIRNYSRTE-SPYGTFLTRKTMMV--AKQADXXXXXXXXXXXXXXXXXXXXFFIYLFNTGCTKDRLWLCQGLLYLHTLGDNLQGAMNCILYCFFTPKVYNSIVQL 989
C +Q L T A SSF WT+ +A+YL++ IV R + RL+ W+ HV+ W VPL+I V A+ +G D S GWCWI + +H VLWML+ GK E+L Y+++ L + ++ H+ N + T S Y L+++ ++ + AD+KL+ IP+I I LR+W T+RF + L + + + L+ LH +G+ QG NCI++ T V + L
Sbjct: 79 CVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLL--WAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDH---VLWMLLTGKLWEMLAYVLLPLLYLLVRKHI-----NRAHTALSEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSPAVQTPV-----LVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSL 293
The following BLAST results are available for this feature:
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