TCONS_00052257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052257
Unique NameTCONS_00052257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=transcript|length=2237bp
TTTCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT
CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA
CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC
TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG
ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC
TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA
CTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATC
CTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGAT
CATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGT
CACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTG
ACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTG
TTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGT
TGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACT
CTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTC
AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG
TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC
ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC
TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC
ATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGT
TTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGT
TTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCG
GGACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGG
AATCTTTTAACGTAATACGACTTTTCTTCGTAACACGTGTGTTGGAAATG
TGTAGCGATCGGGTCACGGTTGACGTATTACGTCTCTTTTGGTAATGTGT
TTTGTTGTTAATGTGTTGCAATGGGATCACGGATGACATATCATGATAGC
GAAGGATAAATAGTTCCCAAAATCAATGCGTCTTAGAGGAAAAACGACAC
CATCAATGTACACTTTACATATTCTACACGGACATAATGTCGGTTTCCAA
TACTAAAATCTACGAAGTGGTCTAAATAATATTCCCATATACACTTATGA
AGTAAACATTTAATTATACCCATGCATTTGCTTGGTACATTTTTCTCCTT
TCTGTTGGACCTGTTTTGTTGAAATATAAAACGACCACTTTTTTCAGTGA
ACAATTATCTGAACTTCTTAACATACTAGTAGGGTCTCAGGTCCCGTGGC
AATTTTTATAGGACTAAACGAAACCTGTTCCATTTCAAAATTTAGTATAT
AATTAGAATTTTTTGAGAAGAGTCAAATTTTTAAGGCCCGGGAAAATCTt
ttgtgaccaaaatagtgacgccataggcaaaactgcaagggaaaataagg
ggtagagaaatagcttaaaagtcaaaacaaacgataatgattggtaccat
ctgatagaGTATGAagttctgagcaaaaaattgtattacaacaactctct
gactaaaacacacaaagaaatagaactgctttaagaccaactaactgtca
gctctactgtgattttgacgtcaaatcttgtcttgattGTACTGgcgtcg
gtatgtttttgaacttcaagcggCTCCCCCCTACTGCCCCCTAACTATAC
GCTTCTTGATTCAGAGGCTTTCACTCAATTGGAATTAAGCATTAAACAGC
GTAGACGAAAAATTTAAGTTCCATATTCTCTCCAACTCtggtaaaaagtt
ttttctgaaattgttaGCATTCTGTAAATAGTTTATTTTTAACATTCTTA
AAAACTGACATGCAAACACTTCTTTCAAAATACTGAAATTCGAGAAAACC
GTTTTGAATAGGGGTAGACATGAATATATATTAATTTCGATGATTTAATA
AATGCCCTGGATATTAAACTACTGCAGGTTAGTCGTG
Run BLAST on NCBI

protein sequence of TCONS_00052257-protein

>TCONS_00052257-protein ID=TCONS_00052257-protein|Name=TCONS_00052257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
SVKRKRKKERKTKMDIPANHNTTTNDIFTDTANNAINTILLMSASLLSTL
GTLVTITTYFFIKDIKTMSRHIIVCISVADLLTCLANLSGLLMSPTKHNT
SPVGCQVQSFLGTTAILSSFLWTLMLAVYLHMIIVEERIDQAKRLIIPWS
HVICWPVPLIINVVALTTGALGNDGDQTSAGWCWIKVTGAEHSTVVLWML
VDGKGLEILTYIVIVTLVIKMKLHLKIKIRNYSRTESPYGTFLTRKTMMV
AKQADRKLIFIPIILIILRIWGTIRFFIYLFNTGCTKDRLWLCQGLLYLH
TLGDNLQGAMNCILYCFFTPKVYNSIVQLLCNVCCRNTCCKCCTIGSRGG
TYESFETYTDDDEEDRNLLT
Run BLAST on NCBI

transcript from alignment at scaffold_213:687162..691937+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at scaffold_213:687162..691937+ (Clytia hemisphaerica)
TTTCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT
CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA
CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC
TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG
ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC
TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA
CTTCTCCAGTCGGAtgtcaggtaatatttcaattACGATTTCCAAggcgc
aaatttttttgaaaaatgcggaaattttcaccttttcgactgtagacgcc
aattgccgcgcaggcatttttttgtcccttttaccaccctaaaaccgtct
cagtcttttttcgcacctacagacaatagaaaaaggtttaAAGAGGTTTA
AAGAGAGGATTTGATcaagtttagggggataattaaataataaagtggca
cgcgcctgaccgcgcaactacggtcgaaaaggtgtattgcatggaatagt
tttttttcaagCTGGCAGAAAAGCTGGAGAGTTAGACAAAGGTTTTTGAT
ACAATGAGAAAggtatttttatactttttcaaACAGTGTTCTGTTTATGC
ACTTTTAGATAAGGTGGTCAGGAGTTACAGCCTTAAGTCAGGACTCGGTA
TATTGTCAAGTTTTAAAACGCGTCACTCGGGTTTGAAGGGTTAAGTCTCT
ATTCGAAACAGTTCTAGTGAAACACGGTAACACAAACAACCAACTACTGA
TAGAACCTATAAAGGGATAGAATATGACAAAAAAGTGTAAACAATACAAA
ACTTCTGAAAGGGTTCTGAAAATAACGTACATGATTGTTAGACCAAAACT
TGCGTAGAAATCCACTTCAGCACAACTGATGAAAAGGTAAAAGGTTTTTC
ACATGATGATCGTAAACACAAGAAATAAGAGATTCTTGCTGCGACACTTT
TCATTATTCAAACATTTACAGGTGCAGAGTTTCTTGGGTACAACAGCTAT
CCTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGA
TCATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGG
TCACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTT
GACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGT
GTTGGATTAAAGTCACTGGTGCAGGTAAATTAATTTGTTTTTCCccgaaa
cagaaaaaaaaagaaaattctacACCAAGTACATCTGCCAAACTCAAATG
TTTGAATTATCATGGCTGAAAAATGTATGAAATTGAAAACTGTAGATATG
GACCTACCTTGTACCATAACGTAACTCACTGTTATCGTtttgtagtacac
tctgtgcgtcttgtctgtttgataaaaaaaattcccatATACAaaaacct
ctgcgatgaagtatgatttataaatagtcacacttctctcgtcgtctccc
GTCATCTCCCGTCTCTCTCCCGCACTCCGCAtctcaaatcaaaaaagaca
tgaaaacagaccctctacggcaatgaattttgaaattagccgtagatatc
gggtcggGTGTACAGAATAATGTGGACCGAACAACGAATTAACAAACATT
CAAAATGAGAATATTCAATATTCTTTGTTACATAGCTTATATACGGGTCC
ATATACGGGTCCATATATAAGCTCTGTTTGCTACTTTGAAGTGTTAAGGA
TCAAGTTAACTCAGAAaaaactttcactttcttttcatCACGATAGAACA
TTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATTC
TGACCTACATTGTGATTGTCACTCTTGTCATCAAAATGAAATTACATTTG
AAAATAAAGGTAAGCGTTTGGtgtttttaataagaaattAATATACCATG
TTTTCGTTCCAATAagtttttttcctattttcttattatggaagcaaacg
ttcgatatGCGTAAGGGATcgcctctacagattcgaaaGTTTACTTCTAT
AAAAATGGAAATTACGTAAACAAAACATGATATAGCTCTTTTGAAGATTA
TATACATCACTAAAGAGGGGCTAGGTTTACGAGGAACACTAGGTATGCTA
ATGGATGGATATGCCTGGGAAAAAAtcgcaaatcaaaacaaaaaattttt
gtctcGTTTAAATCTGCAAATCGTTGTGTTgctgtagaaaacattacgtc
atgaaaatCAGGAATaatcaaatttcatccaaagcATGGCTAAACTTTAA
AGAAATCGTGACTTTTTTGAGGGGCAGAAGATTAATGATTACGAAAATAC
TTCTTGCTTTTGCCCGACatgaataattttttctagATTCGAAATTATTC
AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG
TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC
ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC
TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC
ATGTAAGTATAGAACAGTAGAACAGTTGtgactgaaaaaaatatttattc
tcaGTTTTTATATATCAgggtttaaaggttttatttttacatgagtctgt
tcccgtttcatatcgcctattgttatattatgctgatataaacaaaaaaa
aatattttcctttttctgaccaatcttgctccacacccgtgtcaattcaa
taggAAAAAGCTTGCAAAGTAAAATTGACCAGAAAGCAAACGAAATcagt
cttatttaaaaacaaaacctttattaTTACAGTGataaagacactttttt
atagtttagtttttttttctaacgCCTAGTTGGGAAGATTATCCGTAGTg
gaaatgggccattccattttatatctatgcaggggggtggacgaacattt
ccaggtaGTAATCCGAGAAAAGtttccagggggtgttttttcatttttcc
aagggggtaaaaagtcaTTGTTACagggtatttttgcaaattttgccatt
ttccaaggGCTattcacacattttcaataatcttttttgacttgaaaagg
ttattcgtccacccccccctgtatggttttttaatggaacagcccaatgc
aTTGATAGTACTGTATTTAACAAATATTGGCAACATTAGCAGACCCAAGT
CCTTTATAGAGCAGACTTAAAGGCGGTGCCTTAGCTCTAACCACGTCCTT
TTATGCAGGCAGTGAACTTAGTTTTCTTTCTCACTTTACAGACACTTGGC
GACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTTCTTCACACC
TAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTTGTTGTCGCA
ACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGGACGTACGAA
AGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAATCTTTTAAC
GTAATACGACTTTTCTTCGTAACACGTGTGTTGGAAATGTGTAGCGATCG
GGTCACGGTTGACGTATTACGTCTCTTTTGGTAATGTGTTTTGTTGTTAA
TGTGTTGCAATGGGATCACGGATGACATATCATGATAGCGAAGGATAAAT
AGTTCCCAAAATCAATGCGTCTTAGAGGAAAAACGACACCATCAATGTAC
ACTTTACATATTCTACACGGACATAATGTCGGTTTCCAATACTAAAATCT
ACGAAGTGGTCTAAATAATATTCCCATATACACTTATGAAGTAAACATTT
AATTATACCCATGCATTTGCTTGGTACATTTTTCTCCTTTCTGTTGGACC
TGTTTTGTTGAAATATAAAACGACCACTTTTTTCAGTGAACAATTATCTG
AACTTCTTAACATACTAGTAGGGTCTCAGGTCCCGTGGCAATTTTTATAG
GACTAAACGAAACCTGTTCCATTTCAAAATTTAGTATATAATTAGAATTT
TTTGAGAAGAGTCAAATTTTTAAGGCCCGGGAAAATCTtttgtgaccaaa
atagtgacgccataggcaaaactgcaagggaaaataaggggtagagaaat
agcttaaaagtcaaaacaaacgataatgattggtaccatctgatagaGTA
TGAagttctgagcaaaaaattgtattacaacaactctctgactaaaacac
acaaagaaatagaactgctttaagaccaactaactgtcagctctactgtg
attttgacgtcaaatcttgtcttgattGTACTGgcgtcggtatgtttttg
aacttcaagcggCTCCCCCCTACTGCCCCCTAACTATACGCTTCTTGATT
CAGAGGCTTTCACTCAATTGGAATTAAGCATTAAACAGCGTAGACGAAAA
ATTTAAGTTCCATATTCTCTCCAACTCtggtaaaaagttttttctgaaat
tgttaGCATTCTGTAAATAGTTTATTTTTAACATTCTTAAAAACTGACAT
GCAAACACTTCTTTCAAAATACTGAAATTCGAGAAAACCGTTTTGAATAG
GGGTAGACATGAATATATATTAATTTCGATGATTTAATAAATGCCCTGGA
TATTAAACTACTGCAGGTTAGTCGTG

Coding sequence (CDS) from alignment at scaffold_213:687162..691937+

>TCONS_00052257 ID=TCONS_00052257|Name=TCONS_00052257|organism=Clytia hemisphaerica|type=CDS|length=5565bp|location=Sequence derived from alignment at scaffold_213:687162..691937+ (Clytia hemisphaerica)
TCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATTCC
TGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAACA
ATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTCTT
GGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAGAC
AATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGACTT
GTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATACT
TCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATCCT
TTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGATCA
TTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGTCA
CACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTGAC
AACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTGTT
GGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGTTG
GTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACTCT
TGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTCAA
GAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGGTA
GCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATCAT
ACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATACTG
GCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGCAT
ACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTT
CTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTT
GTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGG
ACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAA
TCTTTTAACGTAATCAgtaaaacgaaaaagaaaaaaagaaagaaaaacga
aaatggACATTCCTGCCAACCATAACACCACAACAAATGACATATTCACA
GACACCGCAAACAATGCAATCAACACtattttgctgatgtcagcatctTT
ACTCTCCACTCTTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCA
AGGACATCAAGACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCA
GACCTTTTGACTTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAAC
AAAACACAATACTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTA
CAACAGCTATCCTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTAC
CTCCATATGATCATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGAT
TATTCCTTGGTCACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATG
TGGTTGCCTTGACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCA
GCTGGATGGTGTTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGT
TCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTG
TGATTGTCACTCTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATT
CGAAATTATTCAAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAA
AACAATGATGGTAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCA
TCATATTAATCATACTGAGGATATGgggaaccatcagatttttcATTTAT
CTCTTTAATACTGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCT
ACTTTATCTGCATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTA
TACTGTACTGTTTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTA
TTATGCAACGTTTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGG
ATCACGTGGCGGGACGTACGAAAGCTTCGAGACGTATACGGATGACGATG
AAGAAGATCGGAATCTTTTAACGTAATCAgtaaaacgaaaaagaaaaaaa
gaaagaaaaacgaaaatggACATTCCTGCCAACCATAACACCACAACAAA
TGACATATTCACAGACACCGCAAACAATGCAATCAACACtattttgctga
tgtcagcatctTTACTCTCCACTCTTGGTACCTTGGTCACTATAACAACG
TATTTCTTTATCAAGGACATCAAGACAATGTCCCGTCATATTATTGTGTG
TATCAGTGTGGCAGACCTTTTGACTTGTTTAGCCAACTTAAGTGGATTAT
TGATGTCACCAACAAAACACAATACTTCTCCAGTCGGAtgtcagGTGCAG
AGTTTCTTGGGTACAACAGCTATCCTTTCCTCATTTCTTTGGACACTGAT
GTTAGCTGTCTACCTCCATATGATCATTGTAGAGGAGAGAATTGATCAAG
CAAAACGATTGATTATTCCTTGGTCACACGTAATATGTTGGCCCGTTCCG
CTAATTATCAATGTGGTTGCCTTGACAACCGGTGCACTTGGTAACGATGG
TGATCAAACGTCAGCTGGATGGTGTTGGATTAAAGTCACTGGTGCAGAAC
ATTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAAAGGCCTGGAAATT
CTGACCTACATTGTGATTGTCACTCTTGTCATCAAAATGAAATTACATTT
GAAAATAAAGATTCGAAATTATTCAAGAACGGAGAGTCCATATGGAACAT
TTCTCACTCGCAAAACAATGATGGTAGCAAAACAAGCGGATCGAAAGTTG
ATTTTTATCCCCATCATATTAATCATACTGAGGATATGgggaaccatcag
atttttcATTTATCTCTTTAATACTGGCTGTACGAAAGATCGGTTGTGGC
TGTGTCAAGGTCTACTTTATCTGCATACACTTGGCGACAACCTTCAGGGT
GCAATGAACTGTATACTGTACTGTTTCTTCACACCTAAAGTTTACAACAG
TATCGTTCAGTTATTATGCAACGTTTGTTGTCGCAACACGTGTTGTAAAT
GTTGCACGATTGGATCACGTGGCGGGACGTACGAAAGCTTCGAGACGTAT
ACGGATGACGATGAAGAAGATCGGAATCTTTTAACGTAATCAgtaaaacg
aaaaagaaaaaaagaaagaaaaacgaaaatggACATTCCTGCCAACCATA
ACACCACAACAAATGACATATTCACAGACACCGCAAACAATGCAATCAAC
ACtattttgctgatgtcagcatctTTACTCTCCACTCTTGGTACCTTGGT
CACTATAACAACGTATTTCTTTATCAAGGACATCAAGACAATGTCCCGTC
ATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGACTTGTTTAGCCAAC
TTAAGTGGATTATTGATGTCACCAACAAAACACAATACTTCTCCAGTCGG
AtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATCCTTTCCTCATTTC
TTTGGACACTGATGTTAGCTGTCTACCTCCATATGATCATTGTAGAGGAG
AGAATTGATCAAGCAAAACGATTGATTATTCCTTGGTCACACGTAATATG
TTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTGACAACCGGTGCAC
TTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTGTTGGATTAAAGTC
ACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGTTGGTGGATGGCAA
AGGCCTGGAAATTCTGACCTACATTGTGATTGTCACTCTTGTCATCAAAA
TGAAATTACATTTGAAAATAAAGATTCGAAATTATTCAAGAACGGAGAGT
CCATATGGAACATTTCTCACTCGCAAAACAATGATGGTAGCAAAACAAGC
GGATCGAAAGTTGATTTTTATCCCCATCATATTAATCATACTGAGGATAT
GgggaaccatcagatttttcATTTATCTCTTTAATACTGGCTGTACGAAA
GATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGCATACACTTGGCGA
CAACCTTCAGGGTGCAATGAACTGTATACTGTACTGTTTCTTCACACCTA
AAGTTTACAACAGTATCGTTCAGTTATTATGCAACGTTTGTTGTCGCAAC
ACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCGGGACGTACGAAAG
CTTCGAGACGTATACGGATGACGATGAAGAAGATCGGAATCTTTTAACGT
AATCAgtaaaacgaaaaagaaaaaaagaaagaaaaacgaaaatggACATT
CCTGCCAACCATAACACCACAACAAATGACATATTCACAGACACCGCAAA
CAATGCAATCAACACtattttgctgatgtcagcatctTTACTCTCCACTC
TTGGTACCTTGGTCACTATAACAACGTATTTCTTTATCAAGGACATCAAG
ACAATGTCCCGTCATATTATTGTGTGTATCAGTGTGGCAGACCTTTTGAC
TTGTTTAGCCAACTTAAGTGGATTATTGATGTCACCAACAAAACACAATA
CTTCTCCAGTCGGAtgtcagGTGCAGAGTTTCTTGGGTACAACAGCTATC
CTTTCCTCATTTCTTTGGACACTGATGTTAGCTGTCTACCTCCATATGAT
CATTGTAGAGGAGAGAATTGATCAAGCAAAACGATTGATTATTCCTTGGT
CACACGTAATATGTTGGCCCGTTCCGCTAATTATCAATGTGGTTGCCTTG
ACAACCGGTGCACTTGGTAACGATGGTGATCAAACGTCAGCTGGATGGTG
TTGGATTAAAGTCACTGGTGCAGAACATTCGACAGTTGTTCTTTGGATGT
TGGTGGATGGCAAAGGCCTGGAAATTCTGACCTACATTGTGATTGTCACT
CTTGTCATCAAAATGAAATTACATTTGAAAATAAAGATTCGAAATTATTC
AAGAACGGAGAGTCCATATGGAACATTTCTCACTCGCAAAACAATGATGG
TAGCAAAACAAGCGGATCGAAAGTTGATTTTTATCCCCATCATATTAATC
ATACTGAGGATATGgggaaccatcagatttttcATTTATCTCTTTAATAC
TGGCTGTACGAAAGATCGGTTGTGGCTGTGTCAAGGTCTACTTTATCTGC
ATACACTTGGCGACAACCTTCAGGGTGCAATGAACTGTATACTGTACTGT
TTCTTCACACCTAAAGTTTACAACAGTATCGTTCAGTTATTATGCAACGT
TTGTTGTCGCAACACGTGTTGTAAATGTTGCACGATTGGATCACGTGGCG
GGACGTACGAAAGCTTCGAGACGTATACGGATGACGATGAAGAAGATCGG
AATCTTTTAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033070XLOC_033070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052257-exon-scaffold_213-1491911889:687162..687481TCONS_00052257-exon-scaffold_213-1491911889:687162..687481Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1510915933:687162..687481TCONS_00052257-exon-scaffold_213-1510915933:687162..687481Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1575043694:687162..687481TCONS_00052257-exon-scaffold_213-1575043694:687162..687481Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1491911889:688233..688485TCONS_00052257-exon-scaffold_213-1491911889:688233..688485Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1510915933:688233..688485TCONS_00052257-exon-scaffold_213-1510915933:688233..688485Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1575043694:688233..688485TCONS_00052257-exon-scaffold_213-1575043694:688233..688485Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1491911889:689058..689170TCONS_00052257-exon-scaffold_213-1491911889:689058..689170Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1510915933:689058..689170TCONS_00052257-exon-scaffold_213-1510915933:689058..689170Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1575043694:689058..689170TCONS_00052257-exon-scaffold_213-1575043694:689058..689170Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1491911889:689648..689863TCONS_00052257-exon-scaffold_213-1491911889:689648..689863Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1510915933:689648..689863TCONS_00052257-exon-scaffold_213-1510915933:689648..689863Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1575043694:689648..689863TCONS_00052257-exon-scaffold_213-1575043694:689648..689863Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1491911889:690603..691937TCONS_00052257-exon-scaffold_213-1491911889:690603..691937Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1510915933:690603..691937TCONS_00052257-exon-scaffold_213-1510915933:690603..691937Clytia hemisphaericaexon
TCONS_00052257-exon-scaffold_213-1575043694:690603..691937TCONS_00052257-exon-scaffold_213-1575043694:690603..691937Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052257-proteinTCONS_00052257-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:687162..691937 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323621	0.161964	0.422185	0.616552	0.173336	0.28023	7.20769	10.2661	9.95561	11.9034	13.2258	10.5821	4.76753	5.62248	7.97813	17.5678	3.64114	5.15194	6.78387	3.58626	2.9836	2.65653	2.41431	3.07068	2.68137	2.23247	1.0695	0.710742	0.471509	0.448245
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022343GCR1-cAMP_receptor
IPR017452GPCR_Rhodpsn_7TM
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
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BLAST of TCONS_00052257 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.100e-18
Identity = 81/230 (35.22%), Postives = 127/230 (55.22%), Query Frame = 3 
Query:  315 CQVQSFLGTTAILSSFLWTLMLAVYLHMIIVEE-RIDQAKRLIIPWS-HVICWPVPLIINVVALTTGALGNDGDQTSAGWCWIKVTGAEHSTVVLWMLVDGKGLEXXXXXXXXXXXXKMKLHLKIKIRNYSRTE-SPYGTFLTRKTMMV--AKQADXXXXXXXXXXXXXXXXXXXXFFIYLFNTGCTKDRLWLCQGLLYLHTLGDNLQGAMNCILYCFFTPKVYNSIVQL 989
            C +Q  L T A  SSF WT+ +A+YL++ IV   R  +  RL+  W+ HV+ W VPL+I V A+    +G D    S GWCWI +   +H   VLWML+ GK  E+L Y+++  L + ++ H+     N + T  S Y   L+++  ++  +  AD+KL+ IP+I I LR+W T+RF + L  +   +  +     L+ LH +G+  QG  NCI++   T  V   +  L
Sbjct:   79 CVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLL--WAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDH---VLWMLLTGKLWEMLAYVLLPLLYLLVRKHI-----NRAHTALSEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSPAVQTPV-----LVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSL 293
The following BLAST results are available for this feature:
BLAST of TCONS_00052257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1572.100e-1835.22G-protein coupled receptor 157 OS=Homo sapiens GN=... [more]
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