TCONS_00052255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052255
Unique NameTCONS_00052255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052255 ID=TCONS_00052255|Name=TCONS_00052255|organism=Clytia hemisphaerica|type=transcript|length=1494bp
CTTTGAATCTCTTGAGAGGCTAAGAGGAAAACAAGCAAAGGATAAGATAT
GTGGACAACTATGGCGACGCCAAGCTGTGGATGTTGGTGGATGGTAAAGG
AATCGAACTGTTGACCTACGTTGTGATCGTCATTTTGTACTCACGGATGA
AATTATGGTCCATCAGACAGATTAAGATACCAAAACAAAATGAAGGTTCG
CACTTATTACAACGTAATTCACTGGATGCTGCAAGATACACGGATAAGAA
GATTATATTGATTCCAATCTTGTTCGTTTTATTGAGGATATGGGGAACGA
TCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAGCCTTCAAAGGGGAT
ATCACAGTATTTGAGACTGCATTGCTCTACTTACAGACAATTGGTGATAA
TTTACAAGGAGCCATCAattgtattttattttgttgCATGACACCGGTTG
TCCGAAAACGAATCAACAAATCAGTCACGAGCATGCGCAGACAGAGATTT
CATTTGTATGATCATTTGGACAGTACCTCGGATACTTCTTCCAGAATATA
TCAACCAATTGATTGAGGAACGGGTAAATCACCGATAATCTGTAATTTCA
GCTTCATACAATTTTCTAGGTTCCCAAATTACAAAAGCAGTGAGTTTATG
CATTTCCCATTTTAACAACTTCTGTCTCTAAAATTTGAGACAGTAAAAGT
GCCGATTAACAGTTGTTTTTTCCCGGACTGGATGTAAATTAATCAAAAAC
TAACAGTCGTTAGTAATCATGGGACTAATATAGGTAAGGCTGTTGGTAGC
TGTCGGTGTAAATGAGAATCATTGTAATGTCTTTCAAATATACACtacag
tagactcccggttattcgaagctccAAGGGGGACCGGAAGCTCGAATAGC
TGAAAAAATTGTTTCCTGCCTGATTTTTAACTTAACCTTAAATGGGATGG
CATTTTCTGAATTAAGGCATTTTGGGTTCAGGAAAGTTTGCCAAGATGAC
TTTTTACTTTCTGAAAagtttcggtgtttgaagaaaaaaagtaatGGTAT
TTCGGTATCAAACATGCCTTGGATCTTAAGCATTTTTCCTGTCGATGTTG
AATGTGATCCATGAAAAATGCATCGGTATTTTCGGTGCTCGCAGCCCCCT
TTACGTATGTCCATATTTAGGTTTATCTATTTTCAGATGATCGTAAGCGA
TTATTAGTTAACAATTATGCGGATTTAGTAATAACGAGTAGAATTTTAAG
CATGTATTATCAGTAATTTATTATTTCCAAGTAAttattaaggaataagt
gtaaAGAGATTTTAATGAGAATTTAATAAGAAtcatttgtaaattttgaa
atagaCATTTTTTAGAAGAATAAAGATGCCATATATGATAAAGTTATGAT
TTCTTGAATAGGGTTTCCAATGATAAAaggttttgtttctaaataagagt
gatatcgtttgcttactcatcaattttaattcacaagctttttc
Run BLAST on NCBI

transcript from alignment at scaffold_213:684164..686901+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052255 ID=TCONS_00052255|Name=TCONS_00052255|organism=Clytia hemisphaerica|type=transcript|length=2738bp|location=Sequence derived from alignment at scaffold_213:684164..686901+ (Clytia hemisphaerica)
CTTTGAATCTCTTGAGAGGCTAAGAGGAAAACAAGCAAAGGATAAGATAT
GGTATGGCTGTGATAAACGGTTCTGCAGATAAGAAGTGGGCTTTGTGCAG
GCAGTGTAGATGAACTTGTATAGGATAGAACAGCCAGAACTTCAAAATAG
GTTtatatatatatgtgaagaaataagaatttctgtccaactatattcac
tcaggagatttgggtggcagagcagcatatatATTAACTTGGAAACGGTT
GGTTAAATATCAATTTTAAGATCAgcagcttttgaaaaaaattacatttt
gatATAATTTACGAAAATACAATAAGGCGAGGGCTGAGAAAATACCGTCA
CATTTTCTTATTCTAGTGGACAACTATGGCGACGCCAAGCTGTGGATGTT
GGTGGATGGTAAAGGAATCGAACTGTTGACCTACGTTGTGATCGTCATTT
TGTACTCACGGATGAAATTATGGTCCATCAGACAGATTAAGGTATGACAA
GATTTAATCAGAGTTTATCCAAGTCAAACCGAGTTAGGTCAAGTAGATCA
TAATGCCATAACTCGTTTACTTTGTTAATTTGATATGAATTacactaatt
tttttttatctttttattgtGAATTCAAACTGATTATGTCGAGTTGATCC
GAGTTAACCCTAAACATAATATCCACGCATCTAACACTAGATACCAAAAC
AAAATGAAGGTTCGCACTTATTACAACGTAATTCACTGGATGCTGCAAGA
TACACGGATAAGAAGATTATATTGATTCCAATCTTGTTCGTTTTATTGAG
GATATGGGGAACGATCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAG
CCTTCAAAGGGGATATCACAGTATTTGAGACTGCATTGCTCTACTTACAG
GTAAGTTATAATCATTGATAGAACAATTTTCATTGCTGTAATGTTTGCTC
CTACTATAGTACtattttaattttctgatttataAGCTTTCTTGCTCTTC
TATTACAATTCATAATAGCATACCGCAGTGAATCTAAAAATAGACATTGA
TTTTTCTGTTTGACCGAAATTCAATCCCATCACCCTTCGCGTTAACTACG
CCTGCATGCAAATTACACTCaactacaaagaaaaagtaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgactttcacgactt
tttaattaagacgaaaaggattgtgggattgattttcggtcaagtgttaa
aagtaataattatgacgtttgcataacggTGTGCTATTCACATCAGAATA
TTTTGAGACTCATTTGGATTTTTCAATTCCTAAATGCTGAGTATACTATC
AAGGTAACAGCTTTGAAATTGTAGCAAAGGTACCATTGTctaggctgcgc
gcatccccagaatttattttgatatattatatcaaatcatatcagagtgG
ATATATGCAGCCTAACCATTGTCCAGAAAGTAAAGACACAAAGCAATGGA
CAAACTTAGTTGCGTCGAACATGAAAAAATCTTACTAAAATCTTTCTGGC
CACTGATTAGAACAAGCCAAAACCGTATTCCTTTCTGCATTTCCTTTTTT
TACGGGCAGAAGTTTCCCATTTTATTTCAGACAATTGGTGATAATTTACA
AGGAGCCATCAattgtattttattttgttgCATGACACCGGTTGTCCGAA
AACGAATCAACAAATCAGTCACGAGCATGCGCAGACAGAGATTTCATTTG
TATGATCATTTGGACAGTACCTCGGATACTTCTTCCAGAATATATCAACC
AATTGATTGAGGAACGGGTAAATCACCGATAATCTGTAATTTCAGCTTCA
TACAATTTTCTAGGTTCCCAAATTACAAAAGCAGTGAGTTTATGCATTTC
CCATTTTAACAACTTCTGTCTCTAAAATTTGAGACAGTAAAAGTGCCGAT
TAACAGTTGTTTTTTCCCGGACTGGATGTAAATTAATCAAAAACTAACAG
TCGTTAGTAATCATGGGACTAATATAGGTAAGGCTGTTGGTAGCTGTCGG
TGTAAATGAGAATCATTGTAATGTCTTTCAAATATACACtacagtagact
cccggttattcgaagctccAAGGGGGACCGGAAGCTCGAATAGCTGAAAA
AATTGTTTCCTGCCTGATTTTTAACTTAACCTTAAATGGGATGGCATTTT
CTGAATTAAGGCATTTTGGGTTCAGGAAAGTTTGCCAAGATGACTTTTTA
CTTTCTGAAAagtttcggtgtttgaagaaaaaaagtaatGGTATTTCGGT
ATCAAACATGCCTTGGATCTTAAGCATTTTTCCTGTCGATGTTGAATGTG
ATCCATGAAAAATGCATCGGTATTTTCGGTGCTCGCAGCCCCCTTTACGT
ATGTCCATATTTAGGTTTATCTATTTTCAGATGATCGTAAGCGATTATTA
GTTAACAATTATGCGGATTTAGTAATAACGAGTAGAATTTTAAGCATGTA
TTATCAGTAATTTATTATTTCCAAGTAAttattaaggaataagtgtaaAG
AGATTTTAATGAGAATTTAATAAGAAtcatttgtaaattttgaaatagaC
ATTTTTTAGAAGAATAAAGATGCCATATATGATAAAGTTATGATTTCTTG
AATAGGGTTTCCAATGATAAAaggttttgtttctaaataagagtgatatc
gtttgcttactcatcaattttaattcacaagctttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033069XLOC_033069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052255-exon-scaffold_213-1491911889:684164..684214TCONS_00052255-exon-scaffold_213-1491911889:684164..684214Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1510915933:684164..684214TCONS_00052255-exon-scaffold_213-1510915933:684164..684214Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1575043694:684164..684214TCONS_00052255-exon-scaffold_213-1575043694:684164..684214Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1491911889:684530..684654TCONS_00052255-exon-scaffold_213-1491911889:684530..684654Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1510915933:684530..684654TCONS_00052255-exon-scaffold_213-1510915933:684530..684654Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1575043694:684530..684654TCONS_00052255-exon-scaffold_213-1575043694:684530..684654Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1491911889:684854..685063TCONS_00052255-exon-scaffold_213-1491911889:684854..685063Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1510915933:684854..685063TCONS_00052255-exon-scaffold_213-1510915933:684854..685063Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1575043694:684854..685063TCONS_00052255-exon-scaffold_213-1575043694:684854..685063Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1491911889:685794..686901TCONS_00052255-exon-scaffold_213-1491911889:685794..686901Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1510915933:685794..686901TCONS_00052255-exon-scaffold_213-1510915933:685794..686901Clytia hemisphaericaexon
TCONS_00052255-exon-scaffold_213-1575043694:685794..686901TCONS_00052255-exon-scaffold_213-1575043694:685794..686901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:684164..686901 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0733867	0	0	0	0	3.35388	3.49985	3.15091	2.96934	0.275814	0.79361	0.722269	2.09913	1.29537	0.509108	0	0.197963	0.198391	0	0	0.147245	0	0	0	0	0.214079	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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