TCONS_00052251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052251
Unique NameTCONS_00052251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052251 ID=TCONS_00052251|Name=TCONS_00052251|organism=Clytia hemisphaerica|type=transcript|length=2198bp
CCTCATCTTATGAAATATACACAACTGTGTTTTTAATGTTCACCTCACGA
GATAGATAGGACTTATTAGGTTTTTTAACATTGAATTTTATTTACAGATA
GAAAAATCTAATTTATCACAGAAACAACTCCCCCAAACGAATAGATATAT
TGAAAGATCTGAAATCTGAGAACACTAGACGACCAAGGAATCAAACAAGA
CGACACAACAAGCTGACACATCCTCAAATTAAAGATGGCAATGAACGGCA
CCTCGTCAACAGAAACGGAGCAAATCATTATTGGAATCTCATCCTCTATC
TCCATCGTCTGTTCATTTCTCATTCTGACCACATTCGCATGTCTACGGGA
AGTACAAACACTGACACGTCAAATCATCATTTGCATGACCATAGCTGACT
TACTGACAGCTCTGGCAAACCTGATTGGTGCAATGGTCATCCATGGTCAG
TTCCACACTGTCTCAAGTAAAACCGTGATTGAAGACGATGGGTTTCTTTC
CTGGTGCACTATCCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGTCCT
TTTTATGGACAATGGTGTTATCTATAGCACTACATTACGTCATAGTGAAA
GAGAAAGTGGATCGAATAATAAAAGTCTTACCGTGGTTGCACGTGCTTTG
TTGGTTGTTGCCATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCAAAC
TTGGTTATTCAAAAGATGCAGTTACTGGTGGATGGTGCTGGATATCGACG
GACGTACACAATGAAGCCGTTATTTGGATGACATTAGACGGAAAATTTAT
CGAAATTTTGACTTATTTTGTCATCTTCTACTATTTCGTACTTATCAAAA
AACATCTCAAGAAAAAGCTTCGTAAGATTTCGCGATCTTCAGCTTCATCG
CTCACAAAGAACAGTAACAGCATTGTTGATGCAATTAGATTATTGGAGAA
GAAACTCATCTTTCTACCCATATTGTTGATTCTGTTGAGAATCTGGGGCA
CAATTAGATATTTATTCGTTGTATTCAAACTGAACACAGCTAACCATAAA
GGAGTCGAAACAGCTGACAGAGTACTCAGCTATCTGCAGGGCGTTGGAGA
TTCATCACAGGCAACTCTCAACTTCATCATATTCTGCGCATGCACACCCA
AAATTcgtaagcagatattcaattgGATTCATTCAGGAAAATGTCATCAA
AACTCAGCAGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAACACTCAT
CACTAAACCATGAGAAAATCATGTCCAGCTGACACACAGCATTGTTTTAT
cgttcatctaacattatatggacgttgtctatattagataaacgttgaaa
caacattttctTGTGCCAACTGGAATGCGAGACTTGAAAACATTCATCAC
CAAACCATATGAGAAAAACATGGGAAACTTGAAAATCAGGAGGTCTCGTA
GACATGGTTTTGGGCCTGTTAAACCGAAACGCCTATGTCTCGTGATTTGG
GACAGAAGAAGGCTTTAATAAGTATTTAACGATCTAAATCTATCATTGAA
CCGATGGGATGAGATATTATTTGTTTCAAACGCAATTCTTCTGCCGACAT
TTTACACCCTACTACTATTAGATTAGGGGCCCGAATACCTTGAGTATCAC
AGCCTATACACTGTAACGACAAATCCCGATTCTATTCCTGCGCACTCAGC
GAAAATAAAAGTAACGATTGCAATCATCAAGGATCCTAAATAATCATCCA
GCATCTTGGATAAAGCCGTAGAAAAGAAACGTAGAAAACATTCAATGGCA
GAGAACCAACTCAAAGCATAAGTTACAAAATATTATACTCCAGTTTTTGT
CCCCaccgaaaataatcaaataaaccaatcctcactgcaaaatattatgc
tatttttcctattcccattgaattttctgacttgttgaaaacaaaataat
ttaaatccccggtcataaaaaatataggaataccaatccccatcgagttt
cagtccttTTTTTACCCCCAATCACTGAAAAATTCAACCgggctgtgaga
agggggtgtagaaAGCTAAATTGTGGTGCCCACGGTACGACAACGAGACG
GTGATACACGAATGTAGTTTAAACATGCATTAACataattgatttcaaag
cctcGAAGGAGCTAGAtccgagactcctggatgggaaatgaaaccact
Run BLAST on NCBI

protein sequence of TCONS_00052251-protein

>TCONS_00052251-protein ID=TCONS_00052251-protein|Name=TCONS_00052251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MAMNGTSSTETEQIIIGISSSISIVCSFLILTTFACLREVQTLTRQIIIC
MTIADLLTALANLIGAMVIHGQFHTVSSKTVIEDDGFLSWCTIQSFVSST
SSLWSFLWTMVLSIALHYVIVKEKVDRIIKVLPWLHVLCWLLPLVVNVVA
LWKGKLGYSKDAVTGGWCWISTDVHNEAVIWMTLDGKFIEILTYFVIFYY
FVLIKKHLKKKLRKISRSSASSLTKNSNSIVDAIRLLEKKLIFLPILLIL
LRIWGTIRYLFVVFKLNTANHKGVETADRVLSYLQGVGDSSQATLNFIIF
CACTPKIRKQIFNWIHSGKCHQNSAAKTDSEEGERKTLITKP
Run BLAST on NCBI

transcript from alignment at scaffold_213:664528..668632+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052251 ID=TCONS_00052251|Name=TCONS_00052251|organism=Clytia hemisphaerica|type=transcript|length=4105bp|location=Sequence derived from alignment at scaffold_213:664528..668632+ (Clytia hemisphaerica)
CCTCATCTTATGAAATATACACAACTGTGTTTTTAATGTTCACCTCACGA GATAGATAGGACTTATTAGGTTTTTTAACATTGAATTTTATTTACAGATA GAAAAATCTAATTTATCACAGAAACAACTCCCCCAAACGAATAGATATAT TGAAAGATCTGAAATCTGAGAACACTAGACGACCAAGGAATCAAACAAGA CGACACAACAAGCTGACACATCCTCAAATTAAAGATGGCAATGAACGGCA CCTCGTCAACAGAAACGGAGCAAATCATTATTGGAATCTCATCCTCTATC TCCATCGTCTGTTCATTTCTCATTCTGACCACATTCGCATGTCTACGGGA AGTACAAACACTGACACGTCAAATCATCATTTGCATGACCATAGCTGACT TACTGACAGCTCTGGCAAACCTGATTGGTGCAATGGTCATCCATGGTCAG TTCCACACTGTCTCAAGTAAAACCGTGATTGAAGACGATGGGTTTCTTTC CTGGTGCACTATCCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGTCCT TTTTATGGACAATGGTGTTATCTATAGCACTACATTACGTCATAGTGAAA GAGAAAGTGGATCGAATAATAAAAGTCTTACCGTGGTTGCACGTGCTTTG TTGGTTGTTGCCATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCAAAC TTGGTTATTCAAAAGATGCAGTTACTGGTGGATGGTGCTGGATATGTAGG TTTGATTTCCCTTTTTCATTCGTTACCTTAAACCTGGGAATAAACAAAAA TGAGTGGAATTTGATTGAACCTGAGAAGAAGTAtaaatccgggggggggg gactcgCTTTAAAAACGAACATACGCGCGGCCGAAAATAAGGCCTTTGAA AACGGACCCTTAgaatgcaatttttctcatctttgctgagaaaccttaca gtgcactttgagAAGAGCTTGGAAAATATGCCCTTAAGGGCCACAtgtat ggtaggtcatttaaCTTGCGGTATAAATTGACCTTATGAAAAGGAAGTAT TCTGGTTAAATATGACACACTTTGCCTAtactttatttacattttttcaa gGGTAGATCCATTTAGAGGTTATTCTGCAAGAATTAAGGCGTAAAACCAT AAACCATCAAAACAAGGGGAAGataatttcatgaatttttatCGTTTTGG AATCTATTTTTTCGAACGACAAATTCAACTATCCTTTTTATTTGGACATC TTTGATTCATTGACATCATTGTGTTAATGGATTAATTTCTATCCACACAT TAACTCATTAAGCTTGAGGAGACTGGGTTGAAGTCTACCAGGAAAGAATC GCGTCAAAATGtgtcaaaactcaaaatatctGAAGTTTTGTGACCTATAT atattatgataattattttaactaaacaCAAAAGAAGATAGATATATACA ATTAAATTTTCCTGGGTCGTTACCCAAACTGTTTTGTTCTATTAATAATt ttatcttactatactaattGAGTTATTAGTAGCTTACTATTATTATTTAA ATTTCATCTTGAGGGAGTCGCACTCTACCTCTTGATCCACGAATGCATCT CACCGTCGATCTTAAAAGTGAGAAATATCTGAAGTTTTTGCGTGTTGCTG ATTCTCTCATAGCGAAaagttttgacgtcaatttttcttGGGAAAACTCG AACCCGGACTCTTCACGTCTCAAGGGCTGATTGACGTATTCTTTCTCTCC TTCAGCGACGGACGTACACAATGAAGCCGTTATTTGGATGACATTAGACG GAAAATTTATCGAAATTTTGACTTATTTTGTCATCTTCTACTATTTCGTA CTTATCAAAAAACATCTCAAGAAAAAGGTAAAAGAAGTATTGTCAATTTA AaactttaagaaatatttttgttaaatccCTGGAAACGTTATACAGTTTC CATCGAGAAAAGTAACATAATCAAGCCCGGGTTACGCTTAAACGCTTGTT AGAATGTTTTTAGAAATTGACCTTTCCCTTAGAATCAGGCCAAAAATATT AGTTTCAATATTCTTTTTCGACGCATTTATTTAGTGTatacttttcatca tttctaGCTTCGTAAGATTTCGCGATCTTCAGCTTCATCGCTCACAAAGA ACAGTAACAGCATTGTTGATGCAATTAGATTATTGGAGAAGAAACTCATC TTTCTACCCATATTGTTGATTCTGTTGAGAATCTGGGGCACAATTAGATA TTTATTCGTTGTATTCAAACTGAACACAGCTAACCATAAAGGAGTCGAAA CAGCTGACAGAGTACTCAGCTATCTGCAGGTATCATGTTTTGAGAATTCc tcactttttttctatgttaaAGAGTTCTCTATAGACGCCCTAATCTCCAA GCAGGTTCTGATACTCAGTGCATGGCCGTCTTCACTCTAAAGGCCATTAC TCCGTCATATTCACCATATCTCTCTAGAGCAGAGCGTGTTATAGGCAGAA TTGAATACAAATTTGTTCGCactaaggaaatttcgagatatggagtaagg tttataaagcattgttaactgaatggACCATAAAacctgttcgagttaag gaatttctagttatggagtaaggtttataaggcattgttaactgaaggga ccataaaacctgttcgagttaaggaattTCTAGTAATGGAGTAAGGTTGA TAAGGAATTGtaaactgaagggaccataaaacctgttcgagttaaggaga cattcgagtaatagatgttcgatttatggagactccactgtatcatACAC ACGACCTTACTTCTTATGATACTGGATTGTATATGTTGTATGTATACCCA AGTCGGGTATGTCAAACATAACATTAATACTGATCATAAAgtgattcttt aaaaaaatcacgtCGAAATTAAGACCAAGTTTAACTTGATTCTTAAAATC AAATCAGAGAAACACAAATATTTACATATCTCTTCATTGAATTCAGGGCG TTGGAGATTCATCACAGGCAACTCTCAACTTCATCATATTCTGCGCATGC ACACCCAAAATTcgtaagcagatattcaattgGATTCATTCAGGAAAATG TCATCAAAACTCAGCAGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAA CACTCATCACTAAACCATGAGAAAATCATGTCCAGCTGACACACAGCATT GTTTTATcgttcatctaacattatatggacgttgtctatattagataaac gttgaaacaacattttctTGTGCCAACTGGAATGCGAGACTTGAAAACAT TCATCACCAAACCATATGAGAAAAACATGGGAAACTTGAAAATCAGGAGG TCTCGTAGACATGGTTTTGGGCCTGTTAAACCGAAACGCCTATGTCTCGT GATTTGGGACAGAAGAAGGCTTTAATAAGTATTTAACGATCTAAATCTAT CATTGAACCGATGGGATGAGATATTATTTGTTTCAAACGCAATTCTTCTG CCGACATTTTACACCCTACTACTATTAGATTAGGGGCCCGAATACCTTGA GTATCACAGCCTATACACTGTAACGACAAATCCCGATTCTATTCCTGCGC ACTCAGCGAAAATAAAAGTAACGATTGCAATCATCAAGGATCCTAAATAA TCATCCAGCATCTTGGATAAAGCCGTAGAAAAGAAACGTAGAAAACATTC AATGGCAGAGAACCAACTCAAAGCATAAGTTACAAAATATTATACTCCAG TTTTTGTCCCCaccgaaaataatcaaataaaccaatcctcactgcaaaat attatgctatttttcctattcccattgaattttctgacttgttgaaaaca aaataatttaaatccccggtcataaaaaatataggaataccaatccccat cgagtttcagtccttTTTTTACCCCCAATCACTGAAAAATTCAACCgggc tgtgagaagggggtgtagaaAGCTAAATTGTGGTGCCCACGGTACGACAA CGAGACGGTGATACACGAATGTAGTTTAAACATGCATTAACataattgat ttcaaagcctcGAAGGAGCTAGAtccgagactcctggatgggaaatgaaa ccact

Coding sequence (CDS) from alignment at scaffold_213:664528..668632+

>TCONS_00052251 ID=TCONS_00052251|Name=TCONS_00052251|organism=Clytia hemisphaerica|type=CDS|length=4116bp|location=Sequence derived from alignment at scaffold_213:664528..668632+ (Clytia hemisphaerica)
ATGGCAATGAACGGCACCTCGTCAACAGAAACGGAGCAAATCATTATTGG
AATCTCATCCTCTATCTCCATCGTCTGTTCATTTCTCATTCTGACCACAT
TCGCATGTCTACGGGAAGTACAAACACTGACACGTCAAATCATCATTTGC
ATGACCATAGCTGACTTACTGACAGCTCTGGCAAACCTGATTGGTGCAAT
GGTCATCCATGGTCAGTTCCACACTGTCTCAAGTAAAACCGTGATTGAAG
ACGATGGGTTTCTTTCCTGGTGCACTATCCAGAGCTTTGTATCTTCTACG
TCTTCACTCTGGTCCTTTTTATGGACAATGGTGTTATCTATAGCACTACA
TTACGTCATAGTGAAAGAGAAAGTGGATCGAATAATAAAAGTCTTACCGT
GGTTGCACGTGCTTTGTTGGTTGTTGCCATTGGTGGTCAATGTGGTGGCA
CTATGGAAAGGCAAACTTGGTTATTCAAAAGATGCAGTTACTGGTGGATG
GTGCTGGATATCGACGGACGTACACAATGAAGCCGTTATTTGGATGACAT
TAGACGGAAAATTTATCGAAATTTTGACTTATTTTGTCATCTTCTACTAT
TTCGTACTTATCAAAAAACATCTCAAGAAAAAGCTTCGTAAGATTTCGCG
ATCTTCAGCTTCATCGCTCACAAAGAACAGTAACAGCATTGTTGATGCAA
TTAGATTATTGGAGAAGAAACTCATCTTTCTACCCATATTGTTGATTCTG
TTGAGAATCTGGGGCACAATTAGATATTTATTCGTTGTATTCAAACTGAA
CACAGCTAACCATAAAGGAGTCGAAACAGCTGACAGAGTACTCAGCTATC
TGCAGGGCGTTGGAGATTCATCACAGGCAACTCTCAACTTCATCATATTC
TGCGCATGCACACCCAAAATTcgtaagcagatattcaattgGATTCATTC
AGGAAAATGTCATCAAAACTCAGCAGCAAAGACAGACAGTGAAGAAGGGG
AGAGGAAAACACTCATCACTAAACCATGAATGGCAATGAACGGCACCTCG
TCAACAGAAACGGAGCAAATCATTATTGGAATCTCATCCTCTATCTCCAT
CGTCTGTTCATTTCTCATTCTGACCACATTCGCATGTCTACGGGAAGTAC
AAACACTGACACGTCAAATCATCATTTGCATGACCATAGCTGACTTACTG
ACAGCTCTGGCAAACCTGATTGGTGCAATGGTCATCCATGGTCAGTTCCA
CACTGTCTCAAGTAAAACCGTGATTGAAGACGATGGGTTTCTTTCCTGGT
GCACTATCCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGTCCTTTTTA
TGGACAATGGTGTTATCTATAGCACTACATTACGTCATAGTGAAAGAGAA
AGTGGATCGAATAATAAAAGTCTTACCGTGGTTGCACGTGCTTTGTTGGT
TGTTGCCATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCAAACTTGGT
TATTCAAAAGATGCAGTTACTGGTGGATGGTGCTGGATATCGACGGACGT
ACACAATGAAGCCGTTATTTGGATGACATTAGACGGAAAATTTATCGAAA
TTTTGACTTATTTTGTCATCTTCTACTATTTCGTACTTATCAAAAAACAT
CTCAAGAAAAAGCTTCGTAAGATTTCGCGATCTTCAGCTTCATCGCTCAC
AAAGAACAGTAACAGCATTGTTGATGCAATTAGATTATTGGAGAAGAAAC
TCATCTTTCTACCCATATTGTTGATTCTGTTGAGAATCTGGGGCACAATT
AGATATTTATTCGTTGTATTCAAACTGAACACAGCTAACCATAAAGGAGT
CGAAACAGCTGACAGAGTACTCAGCTATCTGCAGGGCGTTGGAGATTCAT
CACAGGCAACTCTCAACTTCATCATATTCTGCGCATGCACACCCAAAATT
cgtaagcagatattcaattgGATTCATTCAGGAAAATGTCATCAAAACTC
AGCAGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAACACTCATCACTA
AACCATGAATGGCAATGAACGGCACCTCGTCAACAGAAACGGAGCAAATC
ATTATTGGAATCTCATCCTCTATCTCCATCGTCTGTTCATTTCTCATTCT
GACCACATTCGCATGTCTACGGGAAGTACAAACACTGACACGTCAAATCA
TCATTTGCATGACCATAGCTGACTTACTGACAGCTCTGGCAAACCTGATT
GGTGCAATGGTCATCCATGGTCAGTTCCACACTGTCTCAAGTAAAACCGT
GATTGAAGACGATGGGTTTCTTTCCTGGTGCACTATCCAGAGCTTTGTAT
CTTCTACGTCTTCACTCTGGTCCTTTTTATGGACAATGGTGTTATCTATA
GCACTACATTACGTCATAGTGAAAGAGAAAGTGGATCGAATAATAAAAGT
CTTACCGTGGTTGCACGTGCTTTGTTGGTTGTTGCCATTGGTGGTCAATG
TGGTGGCACTATGGAAAGGCAAACTTGGTTATTCAAAAGATGCAGTTACT
GGTGGATGGTGCTGGATATCGACGGACGTACACAATGAAGCCGTTATTTG
GATGACATTAGACGGAAAATTTATCGAAATTTTGACTTATTTTGTCATCT
TCTACTATTTCGTACTTATCAAAAAACATCTCAAGAAAAAGCTTCGTAAG
ATTTCGCGATCTTCAGCTTCATCGCTCACAAAGAACAGTAACAGCATTGT
TGATGCAATTAGATTATTGGAGAAGAAACTCATCTTTCTACCCATATTGT
TGATTCTGTTGAGAATCTGGGGCACAATTAGATATTTATTCGTTGTATTC
AAACTGAACACAGCTAACCATAAAGGAGTCGAAACAGCTGACAGAGTACT
CAGCTATCTGCAGGGCGTTGGAGATTCATCACAGGCAACTCTCAACTTCA
TCATATTCTGCGCATGCACACCCAAAATTcgtaagcagatattcaattgG
ATTCATTCAGGAAAATGTCATCAAAACTCAGCAGCAAAGACAGACAGTGA
AGAAGGGGAGAGGAAAACACTCATCACTAAACCATGAATGGCAATGAACG
GCACCTCGTCAACAGAAACGGAGCAAATCATTATTGGAATCTCATCCTCT
ATCTCCATCGTCTGTTCATTTCTCATTCTGACCACATTCGCATGTCTACG
GGAAGTACAAACACTGACACGTCAAATCATCATTTGCATGACCATAGCTG
ACTTACTGACAGCTCTGGCAAACCTGATTGGTGCAATGGTCATCCATGGT
CAGTTCCACACTGTCTCAAGTAAAACCGTGATTGAAGACGATGGGTTTCT
TTCCTGGTGCACTATCCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGT
CCTTTTTATGGACAATGGTGTTATCTATAGCACTACATTACGTCATAGTG
AAAGAGAAAGTGGATCGAATAATAAAAGTCTTACCGTGGTTGCACGTGCT
TTGTTGGTTGTTGCCATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCA
AACTTGGTTATTCAAAAGATGCAGTTACTGGTGGATGGTGCTGGATATCG
ACGGACGTACACAATGAAGCCGTTATTTGGATGACATTAGACGGAAAATT
TATCGAAATTTTGACTTATTTTGTCATCTTCTACTATTTCGTACTTATCA
AAAAACATCTCAAGAAAAAGCTTCGTAAGATTTCGCGATCTTCAGCTTCA
TCGCTCACAAAGAACAGTAACAGCATTGTTGATGCAATTAGATTATTGGA
GAAGAAACTCATCTTTCTACCCATATTGTTGATTCTGTTGAGAATCTGGG
GCACAATTAGATATTTATTCGTTGTATTCAAACTGAACACAGCTAACCAT
AAAGGAGTCGAAACAGCTGACAGAGTACTCAGCTATCTGCAGGGCGTTGG
AGATTCATCACAGGCAACTCTCAACTTCATCATATTCTGCGCATGCACAC
CCAAAATTcgtaagcagatattcaattgGATTCATTCAGGAAAATGTCAT
CAAAACTCAGCAGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAACACT
CATCACTAAACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033067XLOC_033067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052251-exon-scaffold_213-1491911889:664528..665272TCONS_00052251-exon-scaffold_213-1491911889:664528..665272Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1510915933:664528..665272TCONS_00052251-exon-scaffold_213-1510915933:664528..665272Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1575043694:664528..665272TCONS_00052251-exon-scaffold_213-1575043694:664528..665272Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1491911889:666283..666404TCONS_00052251-exon-scaffold_213-1491911889:666283..666404Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1510915933:666283..666404TCONS_00052251-exon-scaffold_213-1510915933:666283..666404Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1575043694:666283..666404TCONS_00052251-exon-scaffold_213-1575043694:666283..666404Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1491911889:666635..666856TCONS_00052251-exon-scaffold_213-1491911889:666635..666856Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1510915933:666635..666856TCONS_00052251-exon-scaffold_213-1510915933:666635..666856Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1575043694:666635..666856TCONS_00052251-exon-scaffold_213-1575043694:666635..666856Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1491911889:667524..668632TCONS_00052251-exon-scaffold_213-1491911889:667524..668632Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1510915933:667524..668632TCONS_00052251-exon-scaffold_213-1510915933:667524..668632Clytia hemisphaericaexon
TCONS_00052251-exon-scaffold_213-1575043694:667524..668632TCONS_00052251-exon-scaffold_213-1575043694:667524..668632Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052251-proteinTCONS_00052251-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:664528..668632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.422336 0.968893 1.25847 0.709882 1.27993 1.51913 2.61995 4.91268 5.41019 5.75434 2.19145 2.44479 3.78317 2.11902 0.946529 0 0.847813 0.646331 0.77928 0.308039 0 0 0.337773 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000848GPCR_cAMP
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0030552cAMP binding
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030552 cAMP binding
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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