TCONS_00052250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052250
Unique NameTCONS_00052250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052250 ID=TCONS_00052250|Name=TCONS_00052250|organism=Clytia hemisphaerica|type=transcript|length=416bp
AGAGTTTTTTATTTGGTCGATTTACACATTTATTATATTCTACTaacttg
attttgttttattgttcAGCTTCATTGGAGAAATTCGATTCGAATCAATC
ATCCATAATGACGCCTTATCTTGACGATGATGGACATATCTGCTTATCTT
TACGAATCAACAACCCATTGATCACTGTTGAAGGTGAAtcgattattttt
cttttttgttctcTTTAATTGACTGGATGCAGCATTTTCCAATCTTTTTC
ATGACGCCTTTGATAACTCAAAAAATACCTTTAGTATTGATATGATATAT
AACTAGTTACGCGGATCGTTGAAATTGTACTTAACTCCATtctccatttt
tttgtttacccaaaagtaaaataaaataaaagaattaatAGTAATGAAAA
AAGCTAAATAACAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_213:624056..624471+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052250 ID=TCONS_00052250|Name=TCONS_00052250|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at scaffold_213:624056..624471+ (Clytia hemisphaerica)
AGAGTTTTTTATTTGGTCGATTTACACATTTATTATATTCTACTaacttg
attttgttttattgttcAGCTTCATTGGAGAAATTCGATTCGAATCAATC
ATCCATAATGACGCCTTATCTTGACGATGATGGACATATCTGCTTATCTT
TACGAATCAACAACCCATTGATCACTGTTGAAGGTGAAtcgattattttt
cttttttgttctcTTTAATTGACTGGATGCAGCATTTTCCAATCTTTTTC
ATGACGCCTTTGATAACTCAAAAAATACCTTTAGTATTGATATGATATAT
AACTAGTTACGCGGATCGTTGAAATTGTACTTAACTCCATtctccatttt
tttgtttacccaaaagtaaaataaaataaaagaattaatAGTAATGAAAA
AAGCTAAATAACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033066XLOC_033066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052250-exon-scaffold_213-1491911889:624056..624471TCONS_00052250-exon-scaffold_213-1491911889:624056..624471Clytia hemisphaericaexon
TCONS_00052250-exon-scaffold_213-1510915933:624056..624471TCONS_00052250-exon-scaffold_213-1510915933:624056..624471Clytia hemisphaericaexon
TCONS_00052250-exon-scaffold_213-1575043694:624056..624471TCONS_00052250-exon-scaffold_213-1575043694:624056..624471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:624056..624471 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.199559	0.21169	0	0	0	0	0	0.185337	0	0.242412	0.755676	0.64612	0.389284	0.110163	0	0	6.14351	4.40494	0.177091	0.262459	2.34867	2.59043	0.736872	3.64901	0.23501	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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