|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052242 ID=TCONS_00052242|Name=TCONS_00052242|organism=Clytia hemisphaerica|type=transcript|length=2172bpRun BLAST on NCBI transcript from alignment at scaffold_213:432817..454662+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052242 ID=TCONS_00052242|Name=TCONS_00052242|organism=Clytia hemisphaerica|type=transcript|length=21846bp|location=Sequence derived from alignment at scaffold_213:432817..454662+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052242 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 120.553 bits (301), Expect = 1.004e-27 Identity = 138/484 (28.51%), Postives = 212/484 (43.80%), Query Frame = 1
Query: 253 LHQAAIYDQHQLITDLLNVGGSGTVKSVDPEGRTPLHTAASHGSVRCVKALLERGADPNTISGIEDECCTPVHHAAKRGHLGCLAALLEYEVNLDLKNSRGKKALDVAIDGVTNDCKKCADYILKKMMQRKKEIEAAMCEELYDVIDDGDCEKAREILQTLSDPYSIVNKYYRGPNTLLYRASFGGYVDIVNLLLDYQADGRSNADSGITPLYAACFKGHYEVAAKLIQRFPKQLTIPVTLEQTFPLHAAVINGHLDIISLLLKHR----------QT---------EENMVVL----TSRKVSTDSTKHPPL--KKRSSTVSSLDSLPAEEVFYVDVNKAMKSGYTPLHLAVIHGGQSICQLLLDCEPVIPLSQTANGVPPGALIIDCIANDKTPFHHALTLNKLDIVELFLKYEVDLYQPLIDSSGFKYSILQYACQQGYDEMARLLLHHGFR-DRENVARIE----AVQSGNEQMAQIILN 1614
LH AA Y+ + LLN G S V G TPLH A+ G+V V+ LL+RGA T + +DE TP+H AA+ GH+ LL++ + K G + +A G DC ++ ++Q EI+ + L + C R + + L D + N T L+ A +V ++ LLL A + +SG+TPL+ A F GH + L+QR V +E PLH A GH ++ LL+++ QT NMV L + + H PL R V ++ +L +E + K G+TPLH+A +G + +LLL+ + P + NG+ TP H A+ N LDIV+L L + P + Y+ L A +Q E+AR LL +G + E+V + A Q G+ +M ++L+
Sbjct: 210 LHIAAHYENLNVAQLLLNRGAS--VNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKT--KDEL-TPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDC-------VRLLLQYDAEIDDITLDHLTPLHVAAHCGHHR-VAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET--PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT---KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGL--------------TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG----YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 656 HSP 2 Score: 84.7297 bits (208), Expect = 1.169e-16 Identity = 100/346 (28.90%), Postives = 147/346 (42.49%), Query Frame = 1
Query: 253 LHQAAIYDQHQLITDLLNVGGSGTVKSVDPEGRTPLHTAASHGSVRCVKALLERGADPN--TISGIEDECCTPVHHAAKRGHLGCLAALLEYEVNLDLKNSRGKKALDVAIDGVTNDCKKCADYILKKMMQRKKEIEAAM---CEELYDVIDDGDCEKAREILQTLSDPYSIVNKYYRGPNTLLYRASFGGYVDIVNLLLDYQADGRSNADSGITPLYAACFKGHYEVAAKLIQRFPKQLTIPVTLEQTF-PLHAAVINGHLDIISLLLKHRQTEENMVVLTSRKVSTDSTKHPPLKKRSSTVSSLDSLPAEEVFYVDVNKAMKSGYTPLHLAVIHGGQSICQLLL 1272
LH AA ++ LL K+ D + TPLH AA G VK LLE A+PN T +G TP+H AA+ GH+ + ALLE E + +G L VA K + + +++R AA L+ + + + + +L P+S Y T L+ A+ V++ LL Y + + G+TPL+ A +GH E+ A L+ KQ + + PLH GH+ + +L+KH MV T+R T PL +S ++ + DVN K GY+PLH A G I LLL
Sbjct: 441 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLENNANPNLATTAG-----HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA-------AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY----TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV----MVDATTRMGYT------PLHV-ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 754 The following BLAST results are available for this feature:
BLAST of TCONS_00052242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.