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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052189 ID=TCONS_00052189|Name=TCONS_00052189|organism=Clytia hemisphaerica|type=transcript|length=1553bpRun BLAST on NCBI protein sequence of TCONS_00052189-protein >TCONS_00052189-protein ID=TCONS_00052189-protein|Name=TCONS_00052189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp MSCQNPFDTSIILIPQDEDGICFCGYIIIANKDEFRVNIHLKEKGSLKDARun BLAST on NCBI transcript from alignment at scaffold_212:45667..61104- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052189 ID=TCONS_00052189|Name=TCONS_00052189|organism=Clytia hemisphaerica|type=transcript|length=15438bp|location=Sequence derived from alignment at scaffold_212:45667..61104- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_212:45667..61104- >TCONS_00052189 ID=TCONS_00052189|Name=TCONS_00052189|organism=Clytia hemisphaerica|type=CDS|length=18819bp|location=Sequence derived from alignment at scaffold_212:45667..61104- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052189 vs. Swiss-Prot (Human)
Match: FANCL (E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2) HSP 1 Score: 281.182 bits (718), Expect = 7.201e-89 Identity = 134/355 (37.75%), Postives = 209/355 (58.87%), Query Frame = 2
Query: 95 ILIPQDEDGICFCGYIIIANKDEFRVNIHLKEKGSLKDARLDCSWDVLQTLKGYEEAIQKKLNQSSSIHEFLTELKALVE----NITSFSSLNDRPDDIGSHQLTEIFQEIEQIGWDKLVFTDNNFGTLKFVHCDKESREHILVLERQGAFS----DFVASTNLPVNLQQKKNEKILVKYNKFVKIVDKCQLFWNVLKDLDEECWILEPEVPSYDCQYRRIALGKNASLRIDVNPLQPSTFPECRFLGPSTVIDPLKQNLNKHMHLWDDQKDLLDNLRTVLDIEFPSKTTVEINELRVECGICYAYQLEDEIPDKSCEDTRCAQTFHSSCLLEWMRCLPSFRQSFNVVFGQCPYC 1135
+L+PQ+ + G+I +D F + I L E LK+ARL CSW + L GY +Q+++ S + F+ ELK L+E N +L P S + +EI +GWDKLV+ D F T+K D REH++ L+ + + D+ +P ++ Y++F+ ++ + FW+V+ ++DE+ W+LEPE P RRIALG N S+ I+V+P P+ PEC FLG V+ PL L++++HLWD + +L NL+ VL+I+FP++ +E ++ ++CGICYAYQL+ IPD+ C++++C Q FH CL EW+R L + RQSFN++FG+CPYC
Sbjct: 14 LLLPQNRSKTVYEGFISAQGRD-FHLRIVLPEDLQLKNARLLCSWQLRTILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSS-----LIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYC 362 The following BLAST results are available for this feature:
BLAST of TCONS_00052189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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